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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949011
Clone id TST38A01NGRL0004_N14
Library
Length 557
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_N14. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
TGGGGATGAGGCTCCAAGTTTTGTAATCTCTACCGCTATGGCGAGCTCACTTCTGTCGGC
GAGGCCACACCTCTCGTCGTCTTTCTGTTGCCCCACCTCCCATCTTTGTATTTCCAGCAG
CGGAAGCACTTTCGTCTCCTTCGCGCATTTCACTGCAAGACTCGCCCCTTTCTTCCCTAC
GGAGCAGGGCTGAAAGTGCTGGATTCCTTCCTGTAGAATGCTCATCGCGGCCTCACAATA
AATGCACGGCTCACCATAATAATACTCGACCCAAAAAGCACAACCCTTCCGACAAGAACA
GCATGCCGGCAGTGTATCCCCCGTTCCCTGATCCCCCCCCTGCGGTTGGCGTCGGGTGGC
GTGACAAACATTATAATGAACATCACGCTTCTCCTGCCTCCTCTCCAGCTCCCTCTGCAG
CTGAACCTGCGGTATTGGGTGCTTATTGGGTAATCAAAGAAACATGATCAATCATACTGG
TGGCACACATTCACATAGGGAGGATACATGCCAGCTCATGGTCTGATGCTTACGGTGCGT
TCAAATCAATACTTTTC
■■Homology search results ■■ -
sp_hit_id P11892
Definition sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pisum sativum
Align length 52
Score (bit) 50.4
E-value 6.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949011|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_N14, 5'
         (557 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pi...    50   6e-06
sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic OS=...    44   7e-04
sp|P82411|PSRP6_SPIOL 50S ribosomal protein 6, chloroplastic OS=...    41   0.003
sp|Q8NDX2|VGLU3_HUMAN Vesicular glutamate transporter 3 OS=Homo ...    31   3.6  
sp|Q6HA08|ASTL_HUMAN Astacin-like metalloendopeptidase OS=Homo s...    31   3.6  
sp|Q96L96|ALPK3_HUMAN Alpha-protein kinase 3 OS=Homo sapiens GN=...    30   6.1  

>sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pisum
           sativum GN=PSRP6 PE=3 SV=1
          Length = 104

 Score = 50.4 bits (119), Expect = 6e-06
 Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 6/52 (11%)
 Frame = +3

Query: 162 SPLSSLRSRA------ESAGFLPVECSSRPHNKCTAHHNNTRPKKHNPSDKN 299
           +P SSLR++A       + G L +ECSSRP  K TAHH  TRP+K   SD+N
Sbjct: 15  APNSSLRNKAIRTERRSACGGLLIECSSRPQKKSTAHHMKTRPRKSRLSDRN 66


>sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic
           OS=Arabidopsis thaliana GN=PSRP6 PE=3 SV=1
          Length = 106

 Score = 43.5 bits (101), Expect = 7e-04
 Identities = 18/27 (66%), Positives = 19/27 (70%)
 Frame = +3

Query: 213 VECSSRPHNKCTAHHNNTRPKKHNPSD 293
           +ECSSRP  K TAHH  TRPKK  P D
Sbjct: 38  IECSSRPQKKSTAHHRKTRPKKTQPWD 64


>sp|P82411|PSRP6_SPIOL 50S ribosomal protein 6, chloroplastic
           OS=Spinacia oleracea GN=PSRP6 PE=1 SV=1
          Length = 116

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +3

Query: 201 GFLPVECSSRPHNKCTAHHNNTRPKK 278
           G + +ECSSRP  K TAHH  TRPKK
Sbjct: 41  GVITIECSSRPQKKGTAHHMKTRPKK 66


>sp|Q8NDX2|VGLU3_HUMAN Vesicular glutamate transporter 3 OS=Homo
           sapiens GN=SLC17A8 PE=1 SV=1
          Length = 589

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 114 EIQRWEVGQQKDDERCGLADRSELAIAVEITKLGASSP 1
           E Q W   +   +E+CG+ D+ ELA  +E+     +SP
Sbjct: 505 EKQEWADPENLSEEKCGIIDQDELAEEIELNHESFASP 542


>sp|Q6HA08|ASTL_HUMAN Astacin-like metalloendopeptidase OS=Homo
           sapiens GN=ASTL PE=1 SV=3
          Length = 431

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -2

Query: 232 GRDEHSTGRNPALSALLRREERGESCSEMREGDESASAAGNTKMGGGATE 83
           G   HSTGR+PA ++L  +       +E R  D S S+AG   +  G  E
Sbjct: 292 GSHAHSTGRSPAPASLSLQRLLEALSAESRSPDPSGSSAGGQPVPAGPGE 341


>sp|Q96L96|ALPK3_HUMAN Alpha-protein kinase 3 OS=Homo sapiens
           GN=ALPK3 PE=2 SV=1
          Length = 1907

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 5   DEAPSFVISTAMASSLLSARPHLSSSFCCPTSHLCISSSG-STFVS-FAHFTARLAPFFP 178
           D+ P ++ S A  S LLS RP  S S    ++ L   SSG STF S  A  T    P F 
Sbjct: 227 DDGPVWIPSPASRSYLLSVRPETSLS----SNRLSHPSSGRSTFCSIIAQLTEETQPLFE 282

Query: 179 T 181
           T
Sbjct: 283 T 283
tr_hit_id A9SG03
Definition tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 58
Score (bit) 53.9
E-value 6.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949011|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_N14, 5'
         (557 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella paten...    54   6e-06
tr|B8LPD4|B8LPD4_PICSI Putative uncharacterized protein OS=Picea...    52   3e-05
tr|B7FHD4|B7FHD4_MEDTR Putative uncharacterized protein OS=Medic...    47   0.001
tr|A9PFZ3|A9PFZ3_POPTR Putative uncharacterized protein OS=Popul...    45   0.003
tr|Q2R2R2|Q2R2R2_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    44   0.006
tr|A3CC95|A3CC95_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.006
tr|B6TUI7|B6TUI7_MAIZE Plastid-specific ribosomal protein 6 OS=Z...    43   0.013
tr|B6SX84|B6SX84_MAIZE Plastid-specific ribosomal protein 6 OS=Z...    43   0.013
tr|A7Q1S1|A7Q1S1_VITVI Chromosome chr7 scaffold_44, whole genome...    40   0.085
tr|Q95YG0|Q95YG0_CIOSA Delta OS=Ciona savignyi GN=Cs-Delta PE=2 ...    35   2.1  
tr|A4S2B2|A4S2B2_OSTLU Predicted protein OS=Ostreococcus lucimar...    35   2.7  
tr|A7HCP5|A7HCP5_ANADF Tetratricopeptide TPR_2 repeat protein OS...    35   3.6  
tr|B8IU14|B8IU14_METNO Ribonuclease, Rne/Rng family OS=Methyloba...    33   7.9  
tr|B7DKX2|B7DKX2_DESSA DEAD/DEAH box helicase domain protein OS=...    33   7.9  

>tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164709 PE=4 SV=1
          Length = 315

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 31/58 (53%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
 Frame = +3

Query: 141 SRISLQDSPLSSLRSRAES-----AGFLPVECSSRPHNKCTAHHNNTRPKKHNPSDKN 299
           S  SL  +PLSS  S   S     A  L +ECSS P  K TA HN TRPKK NP DKN
Sbjct: 7   SLASLTITPLSSAVSSRSSVSNNGASLLRIECSSHPQKKSTAGHNKTRPKKSNPYDKN 64


>tr|B8LPD4|B8LPD4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 137

 Score = 51.6 bits (122), Expect = 3e-05
 Identities = 22/31 (70%), Positives = 23/31 (74%)
 Frame = +3

Query: 207 LPVECSSRPHNKCTAHHNNTRPKKHNPSDKN 299
           L +ECSSRP  K TAHH  TRPKKH P DKN
Sbjct: 50  LIIECSSRPRKKATAHHVKTRPKKHQPYDKN 80


>tr|B7FHD4|B7FHD4_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 104

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 21/38 (55%), Positives = 25/38 (65%)
 Frame = +3

Query: 186 RAESAGFLPVECSSRPHNKCTAHHNNTRPKKHNPSDKN 299
           R    G L +ECSSRP  K TAHH  TRP+K + SD+N
Sbjct: 28  RRNVCGGLLIECSSRPQKKSTAHHMKTRPRKSSLSDRN 65


>tr|A9PFZ3|A9PFZ3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 123

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = +3

Query: 201 GFLPVECSSRPHNKCTAHHNNTRPKKHNPSD 293
           G + +ECSSRP  K TAHH  TRP+K  P D
Sbjct: 42  GGMSIECSSRPQKKATAHHRKTRPRKSQPWD 72


>tr|Q2R2R2|Q2R2R2_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=Os11g0550800 PE=2 SV=2
          Length = 127

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 19/30 (63%), Positives = 20/30 (66%)
 Frame = +3

Query: 207 LPVECSSRPHNKCTAHHNNTRPKKHNPSDK 296
           L VECSSRP  K T HH  TRPKK  P D+
Sbjct: 39  LAVECSSRPQKKATKHHMKTRPKKSQPWDR 68


>tr|A3CC95|A3CC95_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032917 PE=4 SV=1
          Length = 374

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 19/30 (63%), Positives = 20/30 (66%)
 Frame = +3

Query: 207 LPVECSSRPHNKCTAHHNNTRPKKHNPSDK 296
           L VECSSRP  K T HH  TRPKK  P D+
Sbjct: 39  LAVECSSRPQKKATKHHMKTRPKKSQPWDR 68


>tr|B6TUI7|B6TUI7_MAIZE Plastid-specific ribosomal protein 6 OS=Zea
           mays PE=2 SV=1
          Length = 123

 Score = 42.7 bits (99), Expect = 0.013
 Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
 Frame = +3

Query: 162 SPLSSLRSRAESAGFLP----------VECSSRPHNKCTAHHNNTRPKKHNPSD 293
           +P  +  +R  S GF P          VECSSRP  K T HH  TRPKK  P D
Sbjct: 20  APSPARHARHYSVGFSPLHGGGRAALAVECSSRPQKKGTKHHMKTRPKKTQPWD 73


>tr|B6SX84|B6SX84_MAIZE Plastid-specific ribosomal protein 6 OS=Zea
           mays PE=2 SV=1
          Length = 121

 Score = 42.7 bits (99), Expect = 0.013
 Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
 Frame = +3

Query: 162 SPLSSLRSRAESAGFLP----------VECSSRPHNKCTAHHNNTRPKKHNPSD 293
           +P  +  +R  S GF P          VECSSRP  K T HH  TRPKK  P D
Sbjct: 18  APSPARHARHYSVGFSPLHGGGRAALAVECSSRPQKKGTKHHMKTRPKKTQPWD 71


>tr|A7Q1S1|A7Q1S1_VITVI Chromosome chr7 scaffold_44, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028574001
           PE=4 SV=1
          Length = 108

 Score = 40.0 bits (92), Expect = 0.085
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +3

Query: 201 GFLPVECSSRPHNKCTAHHNNTRPKKHNPSD 293
           G   +ECSSRP  K T+HH  TRP+K  P D
Sbjct: 33  GAAVIECSSRPQKKGTSHHMKTRPRKTQPWD 63


>tr|Q95YG0|Q95YG0_CIOSA Delta OS=Ciona savignyi GN=Cs-Delta PE=2
           SV=1
          Length = 721

 Score = 35.4 bits (80), Expect = 2.1
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -3

Query: 186 CSVGKKGASLAVKCAKETKVLPLLEIQRWEVGQQKDDERCGLADRSELAIAVEITKL 16
           C +  + +  AVK + ET   P+  +Q W+ GQ   D       ++E++I  E TKL
Sbjct: 610 CVMYARNSRKAVKSSSETSESPMESVQTWDAGQSAADVSKPSVVKAEVSIDAEATKL 666