| DK948956 |
| Clone id |
TST38A01NGRL0004_L05 |
| Library |
TST38 |
| Length |
685 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_L05. 5' end sequence. |
| Accession |
DK948956 |
| Tissue type |
prothallia |
| Developmental stage |
gametophyte |
| Contig ID |
- |
| Sequence |
GGCGTAGGGAATGGGAAGAGGGGTGCCACAGCGAAAGTGGGCGAATATGGCTGGAGACGC
AGAGGGTTGCGGCATGAGCAAGCGGGAGAGAAAGAAGAAGAAGAAGAAGAAGAAGAGGAG
AGAGCATGAAATAGATGCAGCGGCAGGCTCGATGGAGATGAAGCAGCTGGTGGTACAATG
CAGCGTGCCCGCTCATGATGCTGCCTCTTTTCCAGTCCTTGCCGTCGCGCGCCGGCTTAT
ACACTCTCACACTTCCTCCCCATTTCCTCAGTCGTGCCCTCATCTTCAATATCTTGTTCA
ACAGTGCCAATGTGCAAGTGTGGGATCAGGGCCCTTTTCGCCCTCACCGCCTCCTCTCAT
CATCAACCACACATGCCCCTCCTCTCCCATCACCTTGCAGCAACAGGTATTGCTGCGTGA
TGCCACACCCTCACCAACAAGGAGTGCAACGTCTGCATTGCATCCTCTTTCCCATTTGGA
GAAGCAGACATGCCACCCAGTAGAGTCCGCGCACTTGAATACGGACTCAACACGGTACCG
CTTCTCATCACCTTCCTTTGTCGACCAATCGCAACAAAATGTCCCTCCCTCAGCCGAATT
ACCTGCATCCACATTAAAGGCTCTCGAGACAAGGACATGCAAGCACTCTCGCCGCTCAAT
TCGAAGTAGTTTGCTTGCCGCGGCC |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q8CHP6 |
| Definition |
sp|Q8CHP6|PHC3_MOUSE Polyhomeotic-like protein 3 OS=Mus musculus |
| Align length |
79 |
| Score (bit) |
35.8 |
| E-value |
0.22 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9V739 |
| Definition |
tr|A9V739|A9V739_MONBE Predicted protein OS=Monosiga brevicollis |
| Align length |
61 |
| Score (bit) |
38.1 |
| E-value |
0.53 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948956|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_L05, 5'
(685 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A9V739|A9V739_MONBE Predicted protein OS=Monosiga brevicollis... 38 0.53
tr|B5JKX8|B5JKX8_9BACT RND transporter, HAE1/HME family, permeas... 37 1.2
tr|A2RTJ9|A2RTJ9_MOUSE Polyhomeotic-like 3 (Drosophila) OS=Mus m... 36 2.6
tr|Q3A2C4|Q3A2C4_PELCD AcrB/AcrD/AcrF cation/multidrug efflux pu... 35 3.4
tr|Q5FPI9|Q5FPI9_GLUOX Galactose-proton symporter OS=Gluconobact... 35 4.5
tr|A0EGT8|A0EGT8_PARTE Chromosome undetermined scaffold_96, whol... 35 4.5
tr|Q749G1|Q749G1_GEOSL AcrB/AcrD/AcrF family protein OS=Geobacte... 34 7.7
>tr|A9V739|A9V739_MONBE Predicted protein OS=Monosiga brevicollis
GN=38340 PE=4 SV=1
Length = 816
Score = 38.1 bits (87), Expect = 0.53
Identities = 23/61 (37%), Positives = 28/61 (45%)
Frame = +2
Query: 371 TCPSSPITLQQQVLLRDATPSPTRSATSALHPLSHLEKQTCHPVESAHLNTDSTRYRFSS 550
T PS P + PSP R+ATS HP SH K+ C HL+ +T SS
Sbjct: 270 TLPSLPAPPCRVDAATSPPPSPLRTATSKCHPESHDHKRDCIQSSPDHLHRQATDELASS 329
Query: 551 P 553
P
Sbjct: 330 P 330
>tr|B5JKX8|B5JKX8_9BACT RND transporter, HAE1/HME family, permease
protein OS=Verrucomicrobiae bacterium DG1235
GN=VDG1235_1915 PE=4 SV=1
Length = 1046
Score = 37.0 bits (84), Expect = 1.2
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +2
Query: 410 LLRDATPSPTRSATSALHPLSHLEKQTCHPVESAH----LNTDSTRYRFSSPSFVDQSQQ 577
L+R +P A +A + +LE + S LN D+T+ S VDQ++
Sbjct: 70 LVRGFITAPLERAIAAADSIDYLESTSQQSFSSISARLKLNADATKALAEISSKVDQARA 129
Query: 578 NVPPSAELPASTLKALETR 634
++PP AE+P ++ +T+
Sbjct: 130 DLPPEAEVPVINIETADTQ 148
>tr|A2RTJ9|A2RTJ9_MOUSE Polyhomeotic-like 3 (Drosophila) OS=Mus
musculus GN=Phc3 PE=2 SV=1
Length = 981
Score = 35.8 bits (81), Expect = 2.6
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 377 PSSPITLQQQVLLRDATP-SPTRSATSALHPLSHLEKQTCHPVESAHLNTDSTRYRFSSP 553
P+ + QQ V++ P SP++S T +HP + ++ HP+ S+ L T + ++
Sbjct: 383 PNQAQSAQQSVVVSPPPPHSPSQSPTIIIHPQALIQP---HPLVSSALQTGPNLQQAAAD 439
Query: 554 SFVDQSQQNVPPSAELPAS 610
+Q N+P LPAS
Sbjct: 440 QVQSTAQLNLPSHLPLPAS 458
>tr|Q3A2C4|Q3A2C4_PELCD AcrB/AcrD/AcrF cation/multidrug efflux pump
OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
GN=Pcar_2244 PE=4 SV=1
Length = 1030
Score = 35.4 bits (80), Expect = 3.4
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +2
Query: 410 LLRDATPSPTRSATSALHPLSHLEKQTCHPVESAH----LNTDSTRYRFSSPSFVDQSQQ 577
L+R +P A +A + ++E Q+ + LN DST+ S VDQ +
Sbjct: 58 LVRGFITTPLERAIAAADGIDYIESQSAKGTSTIKVRLKLNYDSTKALAEISSKVDQVRN 117
Query: 578 NVPPSAELPASTLKALET 631
++PP AE+P +++ ++
Sbjct: 118 DLPPEAEVPILNIESADS 135
>tr|Q5FPI9|Q5FPI9_GLUOX Galactose-proton symporter OS=Gluconobacter
oxydans GN=GOX1971 PE=3 SV=1
Length = 470
Score = 35.0 bits (79), Expect = 4.5
Identities = 25/73 (34%), Positives = 36/73 (49%)
Frame = +1
Query: 421 CHTLTNKECNVCIASSFPFGEADMPPSRVRALEYGLNTVPLLITFLCRPIATKCPSLSRI 600
C T+TN N I++ FP G A M S + N + +L+T L P TK SL R+
Sbjct: 397 CSTVTNWAANWAISNMFPLGMAMMGASSTFLMFAVFNGLFILVTVLFVP-ETKGVSLERL 455
Query: 601 TCIHIKGSRDKDM 639
G+R +D+
Sbjct: 456 EANLFAGTRLRDL 468
>tr|A0EGT8|A0EGT8_PARTE Chromosome undetermined scaffold_96, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00026853001 PE=4 SV=1
Length = 420
Score = 35.0 bits (79), Expect = 4.5
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +2
Query: 461 HPLSHLEKQTCHPVESAHLNTDSTRYRFSSPSFVDQSQQNVPPSA 595
+PL H+ Q CHP +S NT TR++ S S +Q+++++ SA
Sbjct: 324 YPLFHISFQECHPQQSQRHNTQPTRFKNSYHS--NQNRESIQESA 366
>tr|Q749G1|Q749G1_GEOSL AcrB/AcrD/AcrF family protein OS=Geobacter
sulfurreducens GN=GSU2782 PE=4 SV=1
Length = 1036
Score = 34.3 bits (77), Expect = 7.7
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Frame = +2
Query: 410 LLRDATPSPTRSATSALHPLSHLEKQTCHPVESAH----LNTDSTRYRFSSPSFVDQSQQ 577
L+R +P A +A + ++E Q+ + + LN D T+ S VDQ ++
Sbjct: 58 LVRGFVTTPLERAIAAADGIEYMESQSTLGLSTIKVRLKLNYDGTKALAEISSKVDQVRR 117
Query: 578 NVPPSAELPASTLKALET 631
++PP AE+P +++ ++
Sbjct: 118 DLPPEAEVPVINIESADS 135
|