DK948890 |
Clone id |
TST38A01NGRL0004_I07 |
Library |
TST38 |
Length |
702 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_I07. 5' end sequence. |
Accession |
DK948890 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
TGACGCTATGGCAGATTGTACAAGACGGGCATTGGGCTTCGTCATAGGCGCGTCAAGGCG AGCTCTAGGTTCACAGAGGGCTTTGTCATGGGCAAGAGGGCGAGAGGTTTTCTTCTCGTC TGCAGCGGAGGACTACAAAAGCGAGGTAGATGAGATCAACTCGAAGTTTGCAGAGGCACG AGATGAGATCGAGATGGCGATGGAGTCCAAGGAAACTGTTTACTTTGATGAAGAGGCGCG GACTGCTCGCGAGGCTGTTCAGCTCGTGCTTAATAAATATCAAACTCTGGTTGCTAAGCT TCCGGACCCTGACAAGGGATCTGTGCAGCGCTCTATGGGCCTCAAGATGGAGCAGCTTAA GGCCGAGCTCGACCAGCTCAATGCTTGATTATATAAGAAATGAGCAAAGACATAGGCATT CTTTGCGGACTGATTTTGTGCCGAACTCCCTCTGACGATTGGGTGGCCCCATAGGCTCAA ACCTGCGCTTCAAGCCTTGTGGATGTCTGTGAGTTGGTCATCGAGAAGCCTCACTGTTCT TGAAACTGTGATTTCTTCCTCTGGATATAGGAGTACCTTTTTGGGTCAGTACAAGCCCCT CTGTTTGCATGGTCTTTAAACCTTGAGACCTTGAGATCTAATTTTGTTCACTGTTGTTAA CCCAATTTTCAAGGGAGGTGGGTTGTCTGTGTTTAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P35748 |
Definition |
sp|P35748|MYH11_RABIT Myosin-11 OS=Oryctolagus cuniculus |
Align length |
94 |
Score (bit) |
34.3 |
E-value |
0.67 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948890|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0004_I07, 5' (702 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P35748|MYH11_RABIT Myosin-11 OS=Oryctolagus cuniculus GN=MYH1... 34 0.67 sp|P35749|MYH11_HUMAN Myosin-11 OS=Homo sapiens GN=MYH11 PE=1 SV=3 34 0.67 sp|P41846|WBS14_CAEEL Protein WBSCR14 homolog OS=Caenorhabditis ... 34 0.87 sp|O74324|YH04_SCHPO Uncharacterized protein C1685.04 OS=Schizos... 33 1.5 sp|A1WIG8|SYA_VEREI Alanyl-tRNA synthetase OS=Verminephrobacter ... 33 1.5 sp|Q63862|MYH11_RAT Myosin-11 (Fragments) OS=Rattus norvegicus G... 33 1.5 sp|O08638|MYH11_MOUSE Myosin-11 OS=Mus musculus GN=Myh11 PE=1 SV=1 33 1.9 sp|P10587|MYH11_CHICK Myosin-11 OS=Gallus gallus GN=MYH11 PE=1 SV=4 32 2.5 sp|Q6AW69|CGNL1_MOUSE Cingulin-like protein 1 OS=Mus musculus GN... 32 3.3 sp|A4G2S9|SYA_HERAR Alanyl-tRNA synthetase OS=Herminiimonas arse... 31 5.6 sp|Q54N00|FORH_DICDI Formin-H OS=Dictyostelium discoideum GN=for... 31 5.6 sp|A0LJ66|RRF_SYNFM Ribosome-recycling factor OS=Syntrophobacter... 31 7.4 sp|P14105|MYH9_CHICK Myosin-9 OS=Gallus gallus GN=MYH9 PE=2 SV=1 31 7.4 sp|Q8C627|CI128_MOUSE Uncharacterized protein C9orf128 homolog O... 31 7.4 sp|Q9N4G4|MED1_CAEEL Mediator of RNA polymerase II transcription... 30 9.6
>sp|P35748|MYH11_RABIT Myosin-11 OS=Oryctolagus cuniculus GN=MYH11 PE=2 SV=2 Length = 1972
Score = 34.3 bits (77), Expect = 0.67 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 14/94 (14%) Frame = +2
Query: 140 SEVDEINSKFAEARDEIEMAMESKETVYFD-----EEARTAREAVQ----LVLNKYQTLV 292 +E I+SK+A+ RD E KET EEA A+E ++ ++ + + LV Sbjct: 1458 AEEKNISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTNKMLKAEMEDLV 1517
Query: 293 AKLPDPDKG-----SVQRSMGLKMEQLKAELDQL 379 + D K +R++ +ME++K +L++L Sbjct: 1518 SSKDDVGKNVHELEKSKRALETQMEEMKTQLEEL 1551
>sp|P35749|MYH11_HUMAN Myosin-11 OS=Homo sapiens GN=MYH11 PE=1 SV=3 Length = 1972
Score = 34.3 bits (77), Expect = 0.67 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 14/94 (14%) Frame = +2
Query: 140 SEVDEINSKFAEARDEIEMAMESKETVYFD-----EEARTAREAVQ----LVLNKYQTLV 292 +E I+SK+A+ RD E KET EEA A+E ++ ++ + + LV Sbjct: 1458 AEEKNISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTNKMLKAEMEDLV 1517
Query: 293 AKLPDPDKG-----SVQRSMGLKMEQLKAELDQL 379 + D K +R++ +ME++K +L++L Sbjct: 1518 SSKDDVGKNVHELEKSKRALETQMEEMKTQLEEL 1551
>sp|P41846|WBS14_CAEEL Protein WBSCR14 homolog OS=Caenorhabditis elegans GN=mml-1 PE=2 SV=2 Length = 1009
Score = 33.9 bits (76), Expect = 0.87 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Frame = -2
Query: 224 SKQFPWTPSPSRSHLVPLQTSS*SHLPRFCSPPLQTRRKPLALLPMTKPSVN--LELALT 51 + Q P P PSRS+L+P Q +LP+F Q +P + PM PS + L+ LT Sbjct: 488 NNQPPLVPPPSRSNLLPTQND--PYLPQFLQ-STQPTPQPQSHDPMMAPSRSWWLDSPLT 544
Query: 50 RL*RSPMPVLYNLP 9 +SP+ V LP Sbjct: 545 ASVQSPLSVATPLP 558
>sp|O74324|YH04_SCHPO Uncharacterized protein C1685.04 OS=Schizosaccharomyces pombe GN=SPBC1685.04 PE=2 SV=1 Length = 325
Score = 33.1 bits (74), Expect = 1.5 Identities = 19/74 (25%), Positives = 36/74 (48%) Frame = +2
Query: 131 DYKSEVDEINSKFAEARDEIEMAMESKETVYFDEEARTAREAVQLVLNKYQTLVAKLPDP 310 D S+++ + AE E++ + DEE + +E + +V N+ TLV +L Sbjct: 117 DILSQIESTKASLAEVHKAEEISNLKTSITHLDEEIQILQEKLAIVTNQRNTLVKRLQTY 176
Query: 311 DKGSVQRSMGLKME 352 D ++++ L ME Sbjct: 177 D--NLEKKKALSME 188
>sp|A1WIG8|SYA_VEREI Alanyl-tRNA synthetase OS=Verminephrobacter eiseniae (strain EF01-2) GN=alaS PE=3 SV=1 Length = 872
Score = 33.1 bits (74), Expect = 1.5 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Frame = +2
Query: 35 GFVIGASR-RALGSQRALSWARGREVFFSSAAEDYKSEVDEINSKFAEARD-----EIEM 196 G G R A+ AL+W + E + AA+ ++ V E+N + ++A D E E+ Sbjct: 684 GVAAGVRRIEAVTGSHALAWLQQLEDTVNQAADTLRAPVAELNGRISQALDNARALEKEV 743
Query: 197 AMESKETVYFDEEARTAREAVQLVLNKYQTLVAKLPDPDKGSVQRSMGLKMEQLK 361 A + AR AVQ + L A LP D +++ +M +QLK Sbjct: 744 AALKSRLAASQGQELLAR-AVQ--IKGLAVLAATLPGADAKTLRATMDQLKDQLK 795
>sp|Q63862|MYH11_RAT Myosin-11 (Fragments) OS=Rattus norvegicus GN=Myh11 PE=2 SV=3 Length = 1327
Score = 33.1 bits (74), Expect = 1.5 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 14/94 (14%) Frame = +2
Query: 140 SEVDEINSKFAEARDEIEMAMESKETVYFD-----EEARTAREAVQ----LVLNKYQTLV 292 +E I+SK+A+ RD E KET EEA A+E ++ ++ + + LV Sbjct: 813 AEEKNISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTNKMLKAEMEDLV 872
Query: 293 AKLPDPDKG-----SVQRSMGLKMEQLKAELDQL 379 + D K +R++ +ME+++ +L++L Sbjct: 873 SSKDDVGKNVHELEKSKRALETQMEEMRTQLEEL 906
>sp|O08638|MYH11_MOUSE Myosin-11 OS=Mus musculus GN=Myh11 PE=1 SV=1 Length = 1972
Score = 32.7 bits (73), Expect = 1.9 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 14/93 (15%) Frame = +2
Query: 140 SEVDEINSKFAEARDEIEMAMESKETVYFD-----EEARTAREAVQ----LVLNKYQTLV 292 +E I+SK+A+ RD E KET EEA A+E ++ ++ + + LV Sbjct: 1458 AEEKNISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTNKMLKAEMEDLV 1517
Query: 293 AKLPDPDKG-----SVQRSMGLKMEQLKAELDQ 376 + D K +R++ +ME++K +L++ Sbjct: 1518 SSKDDVGKNVHELEKSKRALETQMEEMKTQLEE 1550
>sp|P10587|MYH11_CHICK Myosin-11 OS=Gallus gallus GN=MYH11 PE=1 SV=4 Length = 1979
Score = 32.3 bits (72), Expect = 2.5 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 14/94 (14%) Frame = +2
Query: 140 SEVDEINSKFAEARDEIEMAMESKETVYFD-----EEARTAREAVQ----LVLNKYQTLV 292 +E I+SK+A+ RD E KET EEA A+E ++ ++ + + LV Sbjct: 1464 AEEKNISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTNKMLKAEMEDLV 1523
Query: 293 AKLPDPDKG-----SVQRSMGLKMEQLKAELDQL 379 + D K +R++ ++E++K +L++L Sbjct: 1524 SSKDDVGKNVHELEKSKRTLEQQVEEMKTQLEEL 1557
>sp|Q6AW69|CGNL1_MOUSE Cingulin-like protein 1 OS=Mus musculus GN=Cgnl1 PE=1 SV=2 Length = 1298
Score = 32.0 bits (71), Expect = 3.3 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 1/115 (0%) Frame = +2
Query: 35 GFVIGASRRALGSQRALSWARGREVFFSSAAEDYKSEVDEINSKFAEARDEIEMAMESKE 214 G + RRA QR + +G E +SEV ++ AR E + A ++ Sbjct: 833 GRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARR 892
Query: 215 TVYFDEEARTAREAVQLVLNKYQTLVAKLPDPDKGSVQ-RSMGLKMEQLKAELDQ 376 + ++E A+ + V + + L+ KL D + Q R + +ME + LD+ Sbjct: 893 AL--EKELEQAQRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDK 945
>sp|A4G2S9|SYA_HERAR Alanyl-tRNA synthetase OS=Herminiimonas arsenicoxydans GN=alaS PE=3 SV=1 Length = 869
Score = 31.2 bits (69), Expect = 5.6 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 12/119 (10%) Frame = +2
Query: 41 VIGASRRALGSQR--------ALSWARGREVFFSSAAEDYKSEVDEINSKFAEARDEIEM 196 V+G S A G +R ALS+ + E SAA KS E+ + A+ D+++ Sbjct: 676 VVGESGVAAGVRRIEAITGANALSYFQDLEATVHSAAATLKSPPAELQPRLAQVLDQVKT 735
Query: 197 AMES----KETVYFDEEARTAREAVQLVLNKYQTLVAKLPDPDKGSVQRSMGLKMEQLK 361 K + + +AV+ + + L AKL + D G+++ +M ++LK Sbjct: 736 LEREINALKGKLASSQGDELLSQAVE--IKGIKVLAAKLENADAGTLRTTMDTLKDKLK 792
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LPL6 |
Definition |
tr|B8LPL6|B8LPL6_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
84 |
Score (bit) |
125.0 |
E-value |
3.0e-27 |
Report |
|