DK948738 |
Clone id |
TST38A01NGRL0004_B20 |
Library |
TST38 |
Length |
698 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_B20. 5' end sequence. |
Accession |
DK948738 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1944Contig1 |
Sequence |
TGCCTTCTCCGGCGGGGAGCCGTTGAGCTGCTGGAAAATGCAGAGAAATAGCGAATAACC AATAATCCAGCTCCTTCAGTGCCCTGGCTCCGTGCAGTGTGAATGGAACAGTGTGAATGG AAGAGGAGAGCAAAGCGCTGCCAGTCATGAGTTCTCCAAGCGCAGCCTGAACACAGCGTA AGCCTACGGAGCATGGATACCTCATTTTCCACAGCTAAAGACTTGTGCCTGCCTAAAGCC GATCAACACCCGCAGATTCTACACAGAAGAGTCTCACATCTTTCCTGTAACTACCCACTT TCCAAGCCCTTTGCCTTGCAGGCCAGGCACAATTGCCCCCTAAAGAATTCCAGGGACACC GCTTCAAAGCCTTTCAAATCCTGGCTGTGGAGTAGCAATGGGAAAAAACCGACTTCAAAT AAACTCGATAAGAGCCCGGTTGGAGATGTCTCAAAGTGGGCTCCCTTCCTTCTATACAGA GTCCTTCTGTTGGTCGGCATTGGGCTTGGAACAAGAGCTCCGGCTATAGCAGCTCCTCCT ACTTCTGAAGTTGCTATTCAAAAAGAAGTAAAGAAGACCACTCAAAACACAGCAGAGAAT AGAGATGTGAAGAGTGAAAGAGCAGAGAACGTGGAGAACAGCACAGCAGAGAAGAGTCTA CAAGCAGATGCTGAGAGTAAGGGAATTGCATGTCTAGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5PQM8 |
Definition |
sp|Q5PQM8|K1539_RAT Uncharacterized protein KIAA1539 homolog OS=Rattus norvegicus |
Align length |
109 |
Score (bit) |
33.1 |
E-value |
1.5 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948738|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0004_B20, 5' (698 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q5PQM8|K1539_RAT Uncharacterized protein KIAA1539 homolog OS=... 33 1.5 sp|Q2HXL0|RBOHC_SOLTU Respiratory burst oxidase homolog protein ... 32 2.5 sp|Q9W1X4|NU214_DROME Nuclear pore complex protein Nup214 OS=Dro... 32 2.5 sp|P56477|IRF5_MOUSE Interferon regulatory factor 5 OS=Mus muscu... 32 3.3 sp|Q8K4L3|SVIL_MOUSE Supervillin OS=Mus musculus GN=Svil PE=1 SV=1 25 3.4 sp|Q96QZ7|MAGI1_HUMAN Membrane-associated guanylate kinase, WW a... 31 5.6 sp|Q8BR27|K1539_MOUSE Uncharacterized protein KIAA1539 OS=Mus mu... 31 5.6 sp|O42368|HXB3A_DANRE Homeobox protein Hox-B3a OS=Danio rerio GN... 31 5.6 sp|Q03973|HMO1_YEAST High mobility group protein 1 OS=Saccharomy... 31 5.6 sp|Q9TU15|ESR2_SHEEP Estrogen receptor beta OS=Ovis aries GN=ESR... 31 5.6 sp|Q5FW52|CF142_MOUSE Uncharacterized protein C6orf142 homolog O... 31 7.3 sp|P40405|SWRB_BACSU Swarming motility protein swrB OS=Bacillus ... 30 9.5
>sp|Q5PQM8|K1539_RAT Uncharacterized protein KIAA1539 homolog OS=Rattus norvegicus PE=2 SV=1 Length = 538
Score = 33.1 bits (74), Expect = 1.5 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 3/109 (2%) Frame = +1
Query: 334 CPLK-NSRDTASKPFKSWLWSSNGKKPTSNKLDKSPVGDVSKWAPFLLYRVLLLVGIGLG 510 CPL NS D + PF S L K+P + D+SP+G K A R L L + Sbjct: 271 CPLAANSSDAKATPFWSHLLPGP-KEPVLDPTDRSPMGRRLKGA-----RRLKLSSLRTL 324
Query: 511 TRAPAIAAPPTSEVAIQKEVKKTTQNTAENRDVKSERAE--NVENSTAE 651 + P + +PP++ V +T E ++ A ++E TAE Sbjct: 325 RKGPGLLSPPSASPFPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAE 373
>sp|Q2HXL0|RBOHC_SOLTU Respiratory burst oxidase homolog protein C OS=Solanum tuberosum GN=RBOHC PE=1 SV=2 Length = 938
Score = 32.3 bits (72), Expect = 2.5 Identities = 20/70 (28%), Positives = 36/70 (51%) Frame = +1
Query: 475 YRVLLLVGIGLGTRAPAIAAPPTSEVAIQKEVKKTTQNTAENRDVKSERAENVENSTAEK 654 Y V+LLVG+G+G P I+ ++ + +N+ EN + S A+N + A+K Sbjct: 731 YEVVLLVGLGIGA-TPMISI--VKDIVNNMKAMDEEENSLENGNGMSNAAQNASPNMAQK 787
Query: 655 SLQADAESKG 684 ++ + S G Sbjct: 788 RGKSSSASGG 797
>sp|Q9W1X4|NU214_DROME Nuclear pore complex protein Nup214 OS=Drosophila melanogaster GN=Nup214 PE=1 SV=2 Length = 1711
Score = 32.3 bits (72), Expect = 2.5 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 7/68 (10%) Frame = +1
Query: 499 IGLGTRAPAIAAP---PTSEVAIQKEVKKTT----QNTAENRDVKSERAENVENSTAEKS 657 + GT +PA+AAP P A++K + T Q AE+++ K+ + E E+ +K Sbjct: 1007 LSFGTGSPAVAAPTPKPNPLSAVEKPTPEPTKPKEQKAAESKEFKAVQPETEESKVPQKP 1066
Query: 658 LQADAESK 681 +A+ E+K Sbjct: 1067 -KAETENK 1073
>sp|P56477|IRF5_MOUSE Interferon regulatory factor 5 OS=Mus musculus GN=Irf5 PE=2 SV=1 Length = 497
Score = 32.0 bits (71), Expect = 3.3 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Frame = +1
Query: 352 RDTASKPFKSWLWSSNGKKPT-SNKLDKSPVGDVSKWAPFLLYRVLLLVGIGLGTRAPAI 528 RD +P+K + SNG PT S D +G+ + L R+L GL PA+ Sbjct: 108 RDMPPQPYKIYEVCSNGPAPTESQPTDDYVLGEEEEEEEEELQRML----PGLSITEPAL 163
Query: 529 AAPPTSEVAIQKEVKK 576 PP + ++ KE K Sbjct: 164 PGPPNAPYSLPKEDTK 179
>sp|Q8K4L3|SVIL_MOUSE Supervillin OS=Mus musculus GN=Svil PE=1 SV=1 Length = 2170
Score = 25.4 bits (54), Expect(2) = 3.4 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +1
Query: 142 QS*VLQAQPEHSVSLRSMDTSFSTAK 219 QS VL P H++ L +MDT ST++ Sbjct: 345 QSGVLPTDPVHAIKLVTMDTPESTSE 370
Score = 25.0 bits (53), Expect(2) = 3.4 Identities = 17/54 (31%), Positives = 26/54 (48%) Frame = +2
Query: 8 SGGEPLSCWKMQRNSE*PIIQLLQCPGSVQCEWNSVNGRGEQSAASHEFSKRSL 169 S G+P W +QR+SE L+ P V+ V + E + +S E + SL Sbjct: 257 STGKPTHEWFLQRDSEGDTPSLINWPSRVKVREKLV--KEESARSSPELTSESL 308
>sp|Q96QZ7|MAGI1_HUMAN Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 OS=Homo sapiens GN=MAGI1 PE=1 SV=2 Length = 1491
Score = 31.2 bits (69), Expect = 5.6 Identities = 34/149 (22%), Positives = 52/149 (34%), Gaps = 7/149 (4%) Frame = +1
Query: 232 PKADQHPQILHRRVSHLSCNYP----LSKPFALQARHNCPLKNSRDTASKPFKSWLWSSN 399 P QHP L +YP S P + H K SR+ + +P + W+ Sbjct: 1263 PDRRQHPS--------LESSYPPDLHKSSPHGEKRAHARDPKGSREYSRQPNEHHTWNGT 1314
Query: 400 GKKPTSNKL---DKSPVGDVSKWAPFLLYRVLLLVGIGLGTRAPAIAAPPTSEVAIQKEV 570 +KP S D++P G A RA A P ++E Sbjct: 1315 SRKPDSGACRPKDRAPEGRRDAQA----------------ERAAAANGPKRRSPEKRREG 1358
Query: 571 KKTTQNTAENRDVKSERAENVENSTAEKS 657 ++ NT E R+ +R + E+S Sbjct: 1359 TRSADNTLERREKHEKRRDVSPERRRERS 1387
>sp|Q8BR27|K1539_MOUSE Uncharacterized protein KIAA1539 OS=Mus musculus GN=Kiaa1539 PE=2 SV=1 Length = 538
Score = 31.2 bits (69), Expect = 5.6 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 3/109 (2%) Frame = +1
Query: 334 CPLK-NSRDTASKPFKSWLWSSNGKKPTSNKLDKSPVGDVSKWAPFLLYRVLLLVGIGLG 510 CPL NS D + PF S L K+P + D SP+G K A R L L + Sbjct: 271 CPLAANSSDAKATPFWSHLLPGP-KEPVLDPTDCSPMGRRLKGA-----RRLKLSSLRTL 324
Query: 511 TRAPAIAAPPTSEVAIQKEVKKTTQNTAENRDVKSERAE--NVENSTAE 651 + P + +PP++ V +T E ++ A ++E TAE Sbjct: 325 RKGPGLLSPPSASPFPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAE 373
>sp|O42368|HXB3A_DANRE Homeobox protein Hox-B3a OS=Danio rerio GN=hoxb3a PE=2 SV=3 Length = 417
Score = 31.2 bits (69), Expect = 5.6 Identities = 18/57 (31%), Positives = 29/57 (50%) Frame = +1
Query: 511 TRAPAIAAPPTSEVAIQKEVKKTTQNTAENRDVKSERAENVENSTAEKSLQADAESK 681 +++ ++A PT I +K++ QNT + S + N E+S EKS A SK Sbjct: 125 SKSSSMATNPTLTKQIFPWMKESRQNTKQKNSSPSASSANAESSGGEKSPPGSAASK 181
>sp|Q03973|HMO1_YEAST High mobility group protein 1 OS=Saccharomyces cerevisiae GN=HMO1 PE=1 SV=1 Length = 246
Score = 31.2 bits (69), Expect = 5.6 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +1
Query: 535 PPTSEVAIQKEVKKTTQNTAENRDVKSERAENV--ENSTAEKSLQADAESKG 684 PP S I +E+ K + ++N K ++A NV EN EKS +A+ G Sbjct: 134 PPLSSTEITQEISKKWKELSDNEKEKWKQAYNVELENYQREKSKYLEAKKNG 185
>sp|Q9TU15|ESR2_SHEEP Estrogen receptor beta OS=Ovis aries GN=ESR2 PE=2 SV=1 Length = 527
Score = 31.2 bits (69), Expect = 5.6 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 2/95 (2%) Frame = +1
Query: 130 AKRCQS*VLQAQPEHS--VSLRSMDTSFSTAKDLCLPKADQHPQILHRRVSHLSCNYPLS 303 A CQS +L A+P+ S RS++ +F ++ L R+ S SC P+S Sbjct: 87 AIHCQSSLLYAEPQKSPWCETRSLEHTFPVNRET-----------LKRKASGSSCASPVS 135
Query: 304 KPFALQARHNCPLKNSRDTASKPFKSWLWSSNGKK 408 P + + H C + D AS + +WS G K Sbjct: 136 SPSSKRDAHFCAV--CSDYAS-GYHYGVWSCEGCK 167
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A1CDF5 |
Definition |
tr|A1CDF5|A1CDF5_ASPCL NF-X1 finger transcription factor, putative OS=Aspergillus clavatus |
Align length |
87 |
Score (bit) |
37.7 |
E-value |
0.71 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948738|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0004_B20, 5' (698 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A1CDF5|A1CDF5_ASPCL NF-X1 finger transcription factor, putati... 38 0.71 tr|Q7SXZ2|Q7SXZ2_DANRE Tuberous sclerosis 1a OS=Danio rerio GN=t... 37 0.93 tr|Q1QX63|Q1QX63_CHRSD Ribonuclease E OS=Chromohalobacter salexi... 35 6.0 tr|B0JJQ3|B0JJQ3_MICAN Hydrophobic amino acid uptake ABC-transpo... 35 6.0 tr|B4KA37|B4KA37_DROMO GI10685 OS=Drosophila mojavensis GN=GI106... 35 6.0 tr|B4GJN4|B4GJN4_DROPE GL25836 OS=Drosophila persimilis GN=GL258... 35 6.0 tr|A2BFC8|A2BFC8_DANRE Novel protein (Zgc:63657) OS=Danio rerio ... 34 7.9 tr|Q38WT5|Q38WT5_LACSS Putative acyltransferase OS=Lactobacillus... 34 7.9 tr|A4N1T0|A4N1T0_HAEIN Immunoglobin A1 protease OS=Haemophilus i... 34 7.9 tr|B6KNX5|B6KNX5_TOXGO Putative uncharacterized protein OS=Toxop... 34 7.9
>tr|A1CDF5|A1CDF5_ASPCL NF-X1 finger transcription factor, putative OS=Aspergillus clavatus GN=ACLA_006390 PE=4 SV=1 Length = 1111
Score = 37.7 bits (86), Expect = 0.71 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Frame = +1
Query: 400 GKKPTSNKLDKSPVGDVSKWAPFLLYRVLLLVGIGLGTR---APAIAAPPTSEVAIQKEV 570 G P S + + GD W P +++L G+G G + AP +A ++ ++E Sbjct: 1000 GASPWSVSMYAALAGDSGGWGPPKKEKLVLRSGVGAGKKSATAPPVAMTEVADSWEEEEE 1059
Query: 571 KKTTQNTAENRDVKSERAENVENSTAE 651 K+ + A R+++SE AE + E Sbjct: 1060 KEEQEEEARERELQSETAEGKTETEVE 1086
>tr|Q7SXZ2|Q7SXZ2_DANRE Tuberous sclerosis 1a OS=Danio rerio GN=tsc1a PE=2 SV=1 Length = 1128
Score = 37.4 bits (85), Expect = 0.93 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 5/120 (4%) Frame = +1
Query: 337 PLKNSRDTASKPFKSWLWSSNG-----KKPTSNKLDKSPVGDVSKWAPFLLYRVLLLVGI 501 P S + S K LWS + P+S + + V D+S A L R+ G Sbjct: 335 PNNQSDEVKSSGMKEELWSPSSICGMSTPPSSRGMSPTTVSDISLSASHLSGRIPSTPGD 394
Query: 502 GLGTRAPAIAAPPTSEVAIQKEVKKTTQNTAENRDVKSERAENVENSTAEKSLQADAESK 681 G T +P+ + + ++ +E+ + QNT+ + E + V + + S + ++K Sbjct: 395 GKWTLSPSTPSGSSPLPSLSEEIGQAAQNTSSTQAKTCEEVKKVTSRSINNSSENGGDAK 454
>tr|Q1QX63|Q1QX63_CHRSD Ribonuclease E OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=Csal_1592 PE=4 SV=1 Length = 1175
Score = 34.7 bits (78), Expect = 6.0 Identities = 19/56 (33%), Positives = 27/56 (48%) Frame = +1
Query: 517 APAIAAPPTSEVAIQKEVKKTTQNTAENRDVKSERAENVENSTAEKSLQADAESKG 684 APA AA PT E + + A++R+ KS+R+ N S ADA +G Sbjct: 847 APAAAAAPTDEDESSQAAAAKSSQDAKSRNAKSKRSRNASKPARTASETADAAPQG 902
>tr|B0JJQ3|B0JJQ3_MICAN Hydrophobic amino acid uptake ABC-transporter OS=Microcystis aeruginosa (strain NIES-843) GN=MAE_28730 PE=4 SV=1 Length = 537
Score = 34.7 bits (78), Expect = 6.0 Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 7/88 (7%) Frame = +1
Query: 439 VGDVSKWA-PFLLYRVLLLVGIG-LGTRAPAIAAPPTSEVAIQKEVKKTTQ-----NTAE 597 VG S W PF L L G+G I P TS V +++ K T+ NTA+ Sbjct: 65 VGQKSSWLLPFALIITALTAGLGGWSLLQMLIPKPDTSPVVLEETPDKQTKATFVSNTAK 124
Query: 598 NRDVKSERAENVENSTAEKSLQADAESK 681 N D+ S+ + + NST K A A K Sbjct: 125 NPDLFSQGEKILLNSTPNKEKGAAAFKK 152
>tr|B4KA37|B4KA37_DROMO GI10685 OS=Drosophila mojavensis GN=GI10685 PE=4 SV=1 Length = 342
Score = 34.7 bits (78), Expect = 6.0 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Frame = +1
Query: 487 LLVGIGLGTRAPAIAAPPTS---EVAIQKEVKKTTQNTAENRDVKSERAENVENSTAEKS 657 LLVGI P+ +AP S E+ +++ ++ T + + D +S+ + + ++T+ S Sbjct: 201 LLVGIAAAASPPSASAPTASAVCELEARQQPQEPTPMDSSSEDSESDSSSSTSSTTSSSS 260
Query: 658 LQADAESKGIACL 696 +D G+A L Sbjct: 261 STSDGHEMGVAGL 273
>tr|B4GJN4|B4GJN4_DROPE GL25836 OS=Drosophila persimilis GN=GL25836 PE=4 SV=1 Length = 1808
Score = 34.7 bits (78), Expect = 6.0 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Frame = +1
Query: 514 RAPAIAAPPTSEVAIQKE----VKKTTQNTAENRDVKSERAENVENSTAEKSLQADAE 675 ++PA+ + P E++ +KE ++ T++ +N+D ++E E E T + +A AE Sbjct: 14 KSPAVESSPEKELSSEKEEETSAEEPTEDKTDNKDKENENEEKKEKETPAEEAEASAE 71
>tr|A2BFC8|A2BFC8_DANRE Novel protein (Zgc:63657) OS=Danio rerio GN=CH211-89P1.5 PE=4 SV=1 Length = 1128
Score = 34.3 bits (77), Expect = 7.9 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 10/109 (9%) Frame = +1
Query: 349 SRDTASKPFKSWLWSSNG-----KKPTSNKLDKSPVGDVSKWAPFLLYRVLLLVGIGLGT 513 S + S K LWS + P+S + + V D+S A L R+ G G T Sbjct: 339 SDEVKSSGMKEELWSPSSICGMSTPPSSRGMSPTTVSDISLSASHLSGRIPSTPGDGKWT 398
Query: 514 RAPAIAAPPTSEVAIQKEVKKTTQNTAEN-----RDVKSERAENVENST 645 +P + + ++ +E+ + QNT+ ++VK + ++ NS+ Sbjct: 399 LSPTTPSGSSPLPSLSEEIGQAAQNTSSTQAKTCKEVKKVTSRSINNSS 447
>tr|Q38WT5|Q38WT5_LACSS Putative acyltransferase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=LSA1044 PE=4 SV=1 Length = 642
Score = 34.3 bits (77), Expect = 7.9 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Frame = +1
Query: 481 VLLLVGIGLGTRAPAIAAPPTSEVAIQKEVKKTT-QNTAENRD-VKSERAENVENSTAEK 654 ++ LVG+ +AP AP + A+ ++K +N A N+ V+ +A+N + A+ Sbjct: 392 IVFLVGLVGAIQAPGQPAPDAHKSALAVNIQKNKKENDARNKALVEKAKAQNKQQKKAKS 451
Query: 655 SLQADAESKGIA 690 QAD E++ A Sbjct: 452 KAQADKEAEAAA 463
>tr|A4N1T0|A4N1T0_HAEIN Immunoglobin A1 protease OS=Haemophilus influenzae R3021 GN=CGSHi22421_08533 PE=4 SV=1 Length = 1550
Score = 34.3 bits (77), Expect = 7.9 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Frame = +1
Query: 511 TRAPAIAAPPTSEVAIQKEVKKTTQNTAENRDVKSERAENVE-NSTAEKSLQADAESK 681 T+ A +P SE ++K + T+ TA+NR+V E NVE N+ K Q+ +E++ Sbjct: 884 TKTEAENSPQKSET-VEKNEQDATETTAQNREVAEEAKSNVEANTQTNKVAQSGSETE 940
>tr|B6KNX5|B6KNX5_TOXGO Putative uncharacterized protein OS=Toxoplasma gondii ME49 GN=TGME49_054940 PE=4 SV=1 Length = 3799
Score = 34.3 bits (77), Expect = 7.9 Identities = 19/65 (29%), Positives = 33/65 (50%) Frame = +1
Query: 496 GIGLGTRAPAIAAPPTSEVAIQKEVKKTTQNTAENRDVKSERAENVENSTAEKSLQADAE 675 G +R ++AA P+SE +KE ++ E + + + +ST E+SLQ D + Sbjct: 2558 GTASDSREASLAADPSSEDQREKEGRREEHEIPEPTETQEDTPAAEPSSTLEESLQDDTQ 2617
Query: 676 SKGIA 690 +G A Sbjct: 2618 REGTA 2622
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