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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948698
Clone id TST38A01NGRL0004_A03
Library
Length 707
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0004_A03. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGACCGAGCATGGCAGTGGTGAAGGTGGAAGTGGGCGACGGAGGAGAAGGTGAAGAAGAG
GAAGCATGGAGAGCAGCGAAGCTGTTCATGGCCAAGGGGCCGTCGGCGACGCTCCAGTTT
CTCAAGGACGAACCGAAGGCCCTGCTATATGCTCTGGACGCGCAGGCCATGGAGGGTCCC
TTCCTTTCGCACGAGATTGCTGCGCAGGCCCCTGCCCTGCTGGATCCTGCCCTCGTCCGC
AAGCAGGAGGCCTGGAAAGCTTTGGGCTCCATGAGCAAGACAGGCGAAGCGTGCCTTTGT
GCAGCTTCTCTCGTTCCTGCTCCCTCATTGGAAAGATTGGCACCCCCCACTCATTGAAAC
CCACAAGGATGAAGCTTCACGTATCTTGTCTGCATTCATGAAGAAGACAGGCCTTAAGCT
CCGCTCTTCTCTTTGATCGCTGCAGCAGCTCGGCTCTCTTTGGTTGACACAATTTGCAGG
TTTTGTGTCCACTGGTTTTTCCTTTTGGTATAGTCTTGCCTGCTCCTTTGCCTACTCTAA
TGTTCTTTGGCATCTGAATATCAATGGCACATGTGTAATCGTGCCCTGTACATGAGATAC
AGGAAGAGATGTCTGTGCATATGGTCCAACCTGACATCTATACNAGATGTATGTGCAGAT
GATATCTGTATCGGAAGCAGAATTGAATTGTATAGTTTAAATGTGTC
■■Homology search results ■■ -
sp_hit_id Q863F8
Definition sp|Q863F8|COX81_EULFU Cytochrome c oxidase polypeptide 8H, mitochondrial OS=Eulemur fulvus fulvus
Align length 63
Score (bit) 34.7
E-value 0.52
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948698|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_A03, 5'
         (707 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q863F8|COX81_EULFU Cytochrome c oxidase polypeptide 8H, mitoc...    35   0.52 
sp|Q863F9|COX81_TARSY Cytochrome c oxidase polypeptide 8H, mitoc...    33   1.5  
sp|Q1PDC9|VP35_MABVR Polymerase cofactor VP35 OS=Lake Victoria m...    32   3.4  
sp|Q6UY68|VP35_MABVO Polymerase cofactor VP35 OS=Lake Victoria m...    32   3.4  
sp|P35259|VP35_MABVM Polymerase cofactor VP35 OS=Lake Victoria m...    32   3.4  
sp|Q1PD52|VP35_MABVA Polymerase cofactor VP35 OS=Lake Victoria m...    32   3.4  
sp|Q9Z0Y8|CAC1I_RAT Voltage-dependent T-type calcium channel sub...    32   3.4  
sp|Q9P0X4|CAC1I_HUMAN Voltage-dependent T-type calcium channel s...    32   3.4  
sp|Q69YH5|CDCA2_HUMAN Cell division cycle-associated protein 2 O...    32   4.4  
sp|O54898|CAC1G_RAT Voltage-dependent T-type calcium channel sub...    32   4.4  
sp|O43497|CAC1G_HUMAN Voltage-dependent T-type calcium channel s...    32   4.4  
sp|Q03039|VP35_MABVP Polymerase cofactor VP35 OS=Lake Victoria m...    31   5.7  
sp|Q9EQ60|CAC1H_RAT Voltage-dependent T-type calcium channel sub...    31   5.7  
sp|O88427|CAC1H_MOUSE Voltage-dependent T-type calcium channel s...    31   5.7  
sp|O95180|CAC1H_HUMAN Voltage-dependent T-type calcium channel s...    31   5.7  
sp|Q01954|BNC1_HUMAN Zinc finger protein basonuclin-1 OS=Homo sa...    30   9.8  

>sp|Q863F8|COX81_EULFU Cytochrome c oxidase polypeptide 8H,
           mitochondrial OS=Eulemur fulvus fulvus GN=COX8H PE=3
           SV=1
          Length = 70

 Score = 34.7 bits (78), Expect = 0.52
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 194 RLLRRPLPCWILPS-SASRRPGKLWAP*ARQAKRAFVQLLSFLLPHWKDWHPPLIETHKD 370
           RLL+ PL CW++P    S +P +     A QA    +  LSFL+P    W    +E++K 
Sbjct: 9   RLLQPPLRCWVVPKLHVSAKPARTPTSPAEQAVGLSMMFLSFLVP--AGWVLSHLESYKK 66

Query: 371 EAS 379
            ++
Sbjct: 67  SST 69


>sp|Q863F9|COX81_TARSY Cytochrome c oxidase polypeptide 8H,
           mitochondrial OS=Tarsius syrichta GN=COX8H PE=3 SV=1
          Length = 70

 Score = 33.1 bits (74), Expect = 1.5
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 194 RLLRRPLPCWILPSS-ASRRPGKLWAP*ARQAKRAFVQLLSFLLPHWKDWHPPLIETHKD 370
           RLL+ PL CW +P +  S +P +       QA    V  +SFL+P    W    +E++K 
Sbjct: 9   RLLQAPLKCWAVPKAHVSAKPARTPTSPMEQAVGLSVMFVSFLVP--SGWVLSHLESYKK 66

Query: 371 EAS 379
            ++
Sbjct: 67  SST 69


>sp|Q1PDC9|VP35_MABVR Polymerase cofactor VP35 OS=Lake Victoria
           marburgvirus (strain Ravn-87) GN=VP35 PE=3 SV=1
          Length = 329

 Score = 32.0 bits (71), Expect = 3.4
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -3

Query: 126 LEKLERRRRPLGHEQLRCSPCFL 58
           LEKL +RR+P G   L+CSPC +
Sbjct: 30  LEKLYKRRKPKGTVGLQCSPCLI 52


>sp|Q6UY68|VP35_MABVO Polymerase cofactor VP35 OS=Lake Victoria
           marburgvirus (strain Ozolin-75) GN=VP35 PE=3 SV=1
          Length = 329

 Score = 32.0 bits (71), Expect = 3.4
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -3

Query: 126 LEKLERRRRPLGHEQLRCSPCFL 58
           LEKL +RR+P G   L+CSPC +
Sbjct: 30  LEKLYKRRKPKGTVGLQCSPCLM 52


>sp|P35259|VP35_MABVM Polymerase cofactor VP35 OS=Lake Victoria
           marburgvirus (strain Musoke-80) GN=VP35 PE=1 SV=1
          Length = 329

 Score = 32.0 bits (71), Expect = 3.4
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -3

Query: 126 LEKLERRRRPLGHEQLRCSPCFL 58
           LEKL +RR+P G   L+CSPC +
Sbjct: 30  LEKLYKRRKPKGTVGLQCSPCLM 52


>sp|Q1PD52|VP35_MABVA Polymerase cofactor VP35 OS=Lake Victoria
           marburgvirus (strain Angola/2005) GN=VP35 PE=3 SV=1
          Length = 329

 Score = 32.0 bits (71), Expect = 3.4
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -3

Query: 126 LEKLERRRRPLGHEQLRCSPCFL 58
           LEKL +RR+P G   L+CSPC +
Sbjct: 30  LEKLYKRRKPKGTVGLQCSPCLM 52


>sp|Q9Z0Y8|CAC1I_RAT Voltage-dependent T-type calcium channel subunit
            alpha-1I OS=Rattus norvegicus GN=Cacna1i PE=2 SV=3
          Length = 2201

 Score = 32.0 bits (71), Expect = 3.4
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -3

Query: 177  TLHGLRVQSI*QGLRFVLEKLERRRRPLGHEQLRCSPCFLFFTFSSVAHF--HLHHC 13
            TL  LRV S   GL+ V+E L    +P+G+  L C   F+ F    V  F    +HC
Sbjct: 1238 TLRPLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHC 1294


>sp|Q9P0X4|CAC1I_HUMAN Voltage-dependent T-type calcium channel
            subunit alpha-1I OS=Homo sapiens GN=CACNA1I PE=1 SV=1
          Length = 2223

 Score = 32.0 bits (71), Expect = 3.4
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -3

Query: 177  TLHGLRVQSI*QGLRFVLEKLERRRRPLGHEQLRCSPCFLFFTFSSVAHF--HLHHC 13
            TL  LRV S   GL+ V+E L    +P+G+  L C   F+ F    V  F    +HC
Sbjct: 1279 TLRPLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHC 1335


>sp|Q69YH5|CDCA2_HUMAN Cell division cycle-associated protein 2
           OS=Homo sapiens GN=CDCA2 PE=1 SV=1
          Length = 1024

 Score = 31.6 bits (70), Expect = 4.4
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 10/119 (8%)
 Frame = -3

Query: 474 NCVNQREPSCCSDQREERSLRPVFFMNADKIREASSLWVS----------MSGGCQSFQ* 325
           N  N R+     D   + S  P  + N + +RE  S + S          M+G  +  + 
Sbjct: 114 NIKNARKSPLAQDSPSQGS--PALYRNVNTLRERISAFQSAFHSIKENEKMTGCLEFSEA 171

Query: 324 GSRNERSCTKARFACLAHGAQSFPGLLLADEGRIQQGRGLRSNLVRKEGTLHGLRVQSI 148
           G  +E +    +    A     FP +L +   RI   R    NL   EG + GL++ +I
Sbjct: 172 GKESEMTDLTRKEGLSACQQSGFPAVLSSKRRRISYQRDSDENLTDAEGKVIGLQIFNI 230


>sp|O54898|CAC1G_RAT Voltage-dependent T-type calcium channel subunit
            alpha-1G OS=Rattus norvegicus GN=Cacna1g PE=2 SV=2
          Length = 2254

 Score = 31.6 bits (70), Expect = 4.4
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -3

Query: 177  TLHGLRVQSI*QGLRFVLEKLERRRRPLGHEQLRCSPCFLFFTFSSVAHF 28
            TL  LRV S  QGL+ V+E L    +P+G+  + C   F+ F    V  F
Sbjct: 1364 TLRPLRVISRAQGLKLVVETLMSSLKPIGNIVVICCAFFIIFGILGVQLF 1413
tr_hit_id A9NTM9
Definition tr|A9NTM9|A9NTM9_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 71
Score (bit) 66.6
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948698|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0004_A03, 5'
         (707 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NTM9|A9NTM9_PICSI Putative uncharacterized protein OS=Picea...    67   1e-14
tr|A9SNQ3|A9SNQ3_PHYPA Predicted protein OS=Physcomitrella paten...    54   5e-11
tr|Q6BY30|Q6BY30_DEBHA DEHA2A12892p OS=Debaryomyces hansenii GN=...    37   0.96 
tr|Q6ZUY9|Q6ZUY9_HUMAN cDNA FLJ43200 fis, clone FEBRA2007793 OS=...    37   1.6  
tr|Q4EVY9|Q4EVY9_RABVF Glycoprotein (Fragment) OS=Rabies virus (...    34   8.1  

>tr|A9NTM9|A9NTM9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 163

 Score = 66.6 bits (161), Expect(2) = 1e-14
 Identities = 37/71 (52%), Positives = 44/71 (61%)
 Frame = +1

Query: 67  WRAAKLFMAKGPSATLQFLKDEPKALLYALDAQAMEGPFLSHEIXXXXXXXXXXXXVRKQ 246
           W  A LF+AKGPSATLQFL ++ KALLYA  AQA++GP  S +               KQ
Sbjct: 41  WGTAMLFLAKGPSATLQFLPEKSKALLYAYKAQALDGPCPSGQDGSLAIDHALRV---KQ 97

Query: 247 EAWKALGSMSK 279
           EAWKALG M +
Sbjct: 98  EAWKALGDMPR 108



 Score = 37.0 bits (84), Expect(2) = 1e-14
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
 Frame = +2

Query: 281 QAKRAFVQLLSFLLPHWKDWHPPLI-----ETHKDEASRILSAF 397
           QAKR F+ LL+ +LP WK+W+         E + DE+++IL  F
Sbjct: 110 QAKREFIDLLTEVLPEWKNWYNSYAAKVQKEENVDESAKILREF 153


>tr|A9SNQ3|A9SNQ3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165853 PE=4 SV=1
          Length = 140

 Score = 53.9 bits (128), Expect(2) = 5e-11
 Identities = 30/71 (42%), Positives = 42/71 (59%)
 Frame = +1

Query: 67  WRAAKLFMAKGPSATLQFLKDEPKALLYALDAQAMEGPFLSHEIXXXXXXXXXXXXVRKQ 246
           WRAA  F+AKGPSATLQ+L+ + ++ L+AL AQA++G     +               +Q
Sbjct: 10  WRAASYFLAKGPSATLQYLQKDVRSNLFALKAQALDGDCPPGQDGSMAMDPSLRI---RQ 66

Query: 247 EAWKALGSMSK 279
           EAW AL  MS+
Sbjct: 67  EAWNALKGMSR 77



 Score = 37.7 bits (86), Expect(2) = 5e-11
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
 Frame = +2

Query: 281 QAKRAFVQLLSFLLPHWKDWHPPLI------ETHKDEASRILSAF 397
           QAKR FV LL+ +LP WK W           E H+ EA +++ AF
Sbjct: 79  QAKRNFVDLLTEVLPEWKKWSADYASKTNSGEEHESEADKLVKAF 123


>tr|Q6BY30|Q6BY30_DEBHA DEHA2A12892p OS=Debaryomyces hansenii
           GN=DEHA2A12892g PE=4 SV=2
          Length = 901

 Score = 37.4 bits (85), Expect = 0.96
 Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 619 CTDISSCISCTGHDYTCAIDIQMPKNIRVGKGAGKTIPKGKTSGHKTCK--LCQPK 458
           C     CI CT + Y CA D     NIR  K +G  IP G TS   + K  L QPK
Sbjct: 54  CDGKQPCIHCTVYSYNCAYD---QPNIRNKKNSGIPIPSGDTSVISSYKAPLSQPK 106


>tr|Q6ZUY9|Q6ZUY9_HUMAN cDNA FLJ43200 fis, clone FEBRA2007793
           OS=Homo sapiens PE=2 SV=1
          Length = 188

 Score = 36.6 bits (83), Expect = 1.6
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 143 CYMLWTRRPWRVPSFRTRLLRRPLPCWILPSSASRRPGKLWAP*A-RQAKRAFVQLL-SF 316
           C  LW   PW +   RT     PLP W +P+ +  +P  LW     RQ K+A   L  S 
Sbjct: 104 CPALWPASPWMLLPGRTE----PLPVWPVPAFSQIQPRPLWIRSGHRQTKQAVASLAGSD 159

Query: 317 LLPHWKDWH 343
           LL H +  H
Sbjct: 160 LLQHKERMH 168


>tr|Q4EVY9|Q4EVY9_RABVF Glycoprotein (Fragment) OS=Rabies virus
           (isolate Fox/Ontario/1991) GN=G PE=4 SV=1
          Length = 353

 Score = 34.3 bits (77), Expect = 8.1
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = -2

Query: 634 SGWTICTDISSCISCTGHDYTCAIDIQMPKNIRVGKGAG-KTIPKGK--TSGHKTCKLCQ 464
           SG  +   ISS    T HDYT    I MP+N+R+G      T  +GK  + G KTC    
Sbjct: 6   SGKCLGITISSTYCSTNHDYT----IWMPENLRLGTSCDIFTTSRGKRASKGSKTCGFVD 61

Query: 463 PKRAELLQRSKRRAELKAC 407
            +   L +  K   +LK C
Sbjct: 62  ER--GLYKSLKGACKLKLC 78