NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948654
Clone id TST38A01NGRL0003_O06
Library
Length 703
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_O06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GAAAGAGGCAAGGTCCCGCACCGGAGCCTCCATGCTTGTTACAAGTAAGCCAGCAGGACG
GCAGGCCTTACCTGGCAATGTTATTGCCCCGTTAAATAGATTTGGCAGGAAAGCATCTCA
AGGAAGCACCCGGTTGATTGGTGCCACAGCTAGGCAACCAAAGATTATGTCTGCAGCCAG
GAACACGAAGACAGTGATTGTGAATCAGTTGAGCATGGCTGGAGCGACGAGAAGGCCTGC
AGCTCCACATGTAGTTTCCTTGGCGAGAGGAGGAATGCCAGCTCAAAGACAGAATTGGCG
TCCTAACAAGGCAGTGGCCAACGCATCTGTTCGAAGGCCTCAAACTTTGGATTCTCGCTT
TGCCAGTCTTATAGAAGAGCGGCAACTGCAAAGCCAGTTTGGTTCTCGTTCGGGGTGGAG
AAGATAATTGGGTTCTGGATTAGTTAGCGATCAAGGCACGTGAGACCTTCGCTGCAGAGT
GGAGTGCTTTGTTCAACACAGTATTAGACTGCACACTGTGCTTCTGGGGTTGAAAAGTCC
ACATTGCTGTTGGATGTCTTTCGTTGTGTTTTAGAACTACTAGGGTATAGGAGAAAATGT
ACATATGGGATAAACAGACTTTCATGAAGGATTGGAGGATCAAATCGTATCGATCAATGG
AGTTGCCCGGCACTGCTTTTAGTGGCAATGCTTTAGTGCAAAC
■■Homology search results ■■ -
sp_hit_id Q6DI48
Definition sp|Q6DI48|DLLA_DANRE Delta-like protein A OS=Danio rerio
Align length 75
Score (bit) 33.1
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948654|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_O06, 5'
         (703 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6DI48|DLLA_DANRE Delta-like protein A OS=Danio rerio GN=dla ...    33   1.5  
sp|Q8G7B1|ATPA_BIFLO ATP synthase subunit alpha OS=Bifidobacteri...    33   2.0  
sp|A1A3C7|ATPA_BIFAA ATP synthase subunit alpha OS=Bifidobacteri...    33   2.0  
sp|Q6H3X3|RET1G_HUMAN Retinoic acid early transcript 1G protein ...    32   3.3  
sp|Q7Z589|EMSY_HUMAN Protein EMSY OS=Homo sapiens GN=EMSY PE=1 SV=2    32   4.4  
sp|Q83G89|ATPA_TROWT ATP synthase subunit alpha OS=Tropheryma wh...    32   4.4  
sp|Q83HY2|ATPA_TROW8 ATP synthase subunit alpha OS=Tropheryma wh...    32   4.4  
sp|A0JY66|ATPA_ARTS2 ATP synthase subunit alpha OS=Arthrobacter ...    31   5.7  
sp|Q13XV9|ATPA1_BURXL ATP synthase subunit alpha 1 OS=Burkholder...    31   5.7  
sp|P97677|DLL1_RAT Delta-like protein 1 OS=Rattus norvegicus GN=...    31   7.4  
sp|Q2JSW1|ATPA_SYNJA ATP synthase subunit alpha OS=Synechococcus...    30   9.7  
sp|Q6AG60|ATPA_LEIXX ATP synthase subunit alpha OS=Leifsonia xyl...    30   9.7  
sp|B0RED6|ATPA_CLAMS ATP synthase subunit alpha OS=Clavibacter m...    30   9.7  
sp|A5CQ58|ATPA_CLAM3 ATP synthase subunit alpha OS=Clavibacter m...    30   9.7  
sp|A1R7V5|ATPA_ARTAT ATP synthase subunit alpha OS=Arthrobacter ...    30   9.7  
sp|A2T317|ATPA_ANGEV ATP synthase subunit alpha, chloroplastic O...    30   9.7  
sp|Q2T873|ATPA2_BURTA ATP synthase subunit alpha 2 OS=Burkholder...    30   9.7  

>sp|Q6DI48|DLLA_DANRE Delta-like protein A OS=Danio rerio GN=dla
           PE=1 SV=1
          Length = 772

 Score = 33.1 bits (74), Expect = 1.5
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = -1

Query: 331 NRCVGHCLVRTPILSLSWHSSSRQGNYMWSCRPSRRSSHAQLIHNHCLRVPGCRHNLWLP 152
           N+ + +C    P L+ +  S++ QG+Y  SCRP    +  ++  N C   P CR+     
Sbjct: 288 NQDLNYCTHHKPCLNGATCSNTGQGSYTCSCRPGFSGASCEIEVNECTGNP-CRNG---G 343

Query: 151 SCGTNQPGASLRCFP 107
           SC   +   S  C P
Sbjct: 344 SCTDMENTYSCTCPP 358


>sp|Q8G7B1|ATPA_BIFLO ATP synthase subunit alpha OS=Bifidobacterium
           longum GN=atpA PE=3 SV=1
          Length = 543

 Score = 32.7 bits (73), Expect = 2.0
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 13/131 (9%)
 Frame = +2

Query: 2   KEARSRTGASMLVTSKPAGRQALPGNVIAPLNRFGRKASQGSTRLIGATARQPKIMSAAR 181
           K+A +    S+L+  +P GR+A PG+V    +R   + ++ S  L G +     I+    
Sbjct: 278 KQAEAYRSISLLLR-RPPGREAYPGDVFYLHSRLLERCAKVSDDLGGGSMTGLPIVETKA 336

Query: 182 N-------------TKTVIVNQLSMAGATRRPAAPHVVSLARGGMPAQRQNWRPNKAVAN 322
           N             T   I  Q  +  A +RPA    +S++R G  AQ +  +       
Sbjct: 337 NDVSAYIPTNVISITDGQIFLQSDLFNANQRPAVDVGISVSRVGGAAQTKALKKVSGTLK 396

Query: 323 ASVRRPQTLDS 355
            S+ + ++L+S
Sbjct: 397 ISLAQYRSLES 407


>sp|A1A3C7|ATPA_BIFAA ATP synthase subunit alpha OS=Bifidobacterium
           adolescentis (strain ATCC 15703 / DSM 20083) GN=atpA
           PE=3 SV=1
          Length = 542

 Score = 32.7 bits (73), Expect = 2.0
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 13/131 (9%)
 Frame = +2

Query: 2   KEARSRTGASMLVTSKPAGRQALPGNVIAPLNRFGRKASQGSTRLIGATARQPKIMSAAR 181
           K+A +    S+L+  +P GR+A PG+V    +R   + ++ S  L G +     I+    
Sbjct: 277 KQAEAYRSISLLLR-RPPGREAYPGDVFYLHSRLLERCAKVSDDLGGGSMTGLPIVETKA 335

Query: 182 N-------------TKTVIVNQLSMAGATRRPAAPHVVSLARGGMPAQRQNWRPNKAVAN 322
           N             T   I  Q  +  A +RPA    +S++R G  AQ +  +       
Sbjct: 336 NDVSAYIPTNVISITDGQIFLQSDLFNANQRPAVDVGISVSRVGGAAQTKALKKVSGTLK 395

Query: 323 ASVRRPQTLDS 355
            S+ + ++L+S
Sbjct: 396 ISLAQYRSLES 406


>sp|Q6H3X3|RET1G_HUMAN Retinoic acid early transcript 1G protein
           OS=Homo sapiens GN=RAET1G PE=1 SV=1
          Length = 334

 Score = 32.0 bits (71), Expect = 3.3
 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
 Frame = -2

Query: 540 GLFNPRSTVCSLILC*---------TKHSTLQRRSHVP*SLTNPEPNYLLHPEREPNWLC 388
           G   PR+T  +LILC          ++HS  Q   H P SL  P    LLH    P WL 
Sbjct: 218 GTAQPRATATTLILCCLLIMCLLICSRHSLTQSHGHHPQSLQPPPHPPLLH----PTWLL 273

Query: 387 S---CRSSIRLAKR 355
                  S ++AKR
Sbjct: 274 RRVLWSDSYQIAKR 287


>sp|Q7Z589|EMSY_HUMAN Protein EMSY OS=Homo sapiens GN=EMSY PE=1 SV=2
          Length = 1322

 Score = 31.6 bits (70), Expect = 4.4
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
 Frame = +2

Query: 29  SMLVTSKPAGR----QALPG-NVIAPL-NRFGRKASQGSTRLIGATARQPKIMSAARNTK 190
           +++V  K  G+    Q LPG NV+  L N  G K  Q        T  +P I++A R   
Sbjct: 577 NVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTIQTVP-----TGAKPAILTATRPIT 631

Query: 191 TVIVNQLSMAGATRRPAAPHVVSLARGGMPAQRQNW-RPNKAVANASVRRPQT 346
            +IV Q    G+T +PAA  + +    G   + Q   +P      A+V   QT
Sbjct: 632 KMIVTQPKGIGSTVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQT 684


>sp|Q83G89|ATPA_TROWT ATP synthase subunit alpha OS=Tropheryma
           whipplei (strain Twist) GN=atpA PE=3 SV=2
          Length = 542

 Score = 31.6 bits (70), Expect = 4.4
 Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
 Frame = +2

Query: 2   KEARSRTGASMLVTSKPAGRQALPGNVIAPLNRFGRKASQGSTRLIGATARQPKIMSAAR 181
           K+A +    S+L+  +P GR+A PG+V    +R   + ++ S  + G +     I+    
Sbjct: 278 KQAEAYRAISLLLR-RPPGREAYPGDVFYLHSRLLERCAKLSDEMGGGSMTGLPIIETKA 336

Query: 182 N-------------TKTVIVNQLSMAGATRRPAAPHVVSLARGGMPAQRQNWRPNKAVAN 322
           N             T   I  Q  +  A +RPA    +S++R G  AQ ++ +    +  
Sbjct: 337 NDISAYIPTNVISITDGQIFLQSDLFNANQRPAVDVGISVSRVGGDAQIKSIKKVSGMLK 396

Query: 323 ASVRRPQTLD--SRFAS---LIEERQL 388
             + + + L+  S FAS    +  RQL
Sbjct: 397 LELAQYRALEAFSMFASDLDAVSRRQL 423


>sp|Q83HY2|ATPA_TROW8 ATP synthase subunit alpha OS=Tropheryma
           whipplei (strain TW08/27) GN=atpA PE=3 SV=1
          Length = 542

 Score = 31.6 bits (70), Expect = 4.4
 Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
 Frame = +2

Query: 2   KEARSRTGASMLVTSKPAGRQALPGNVIAPLNRFGRKASQGSTRLIGATARQPKIMSAAR 181
           K+A +    S+L+  +P GR+A PG+V    +R   + ++ S  + G +     I+    
Sbjct: 278 KQAEAYRAISLLLR-RPPGREAYPGDVFYLHSRLLERCAKLSDEMGGGSMTGLPIIETKA 336

Query: 182 N-------------TKTVIVNQLSMAGATRRPAAPHVVSLARGGMPAQRQNWRPNKAVAN 322
           N             T   I  Q  +  A +RPA    +S++R G  AQ ++ +    +  
Sbjct: 337 NDISAYIPTNVISITDGQIFLQSDLFNANQRPAVDVGISVSRVGGDAQIKSIKKVSGMLK 396

Query: 323 ASVRRPQTLD--SRFAS---LIEERQL 388
             + + + L+  S FAS    +  RQL
Sbjct: 397 LELAQYRALEAFSMFASDLDAVSRRQL 423


>sp|A0JY66|ATPA_ARTS2 ATP synthase subunit alpha OS=Arthrobacter sp.
           (strain FB24) GN=atpA PE=3 SV=2
          Length = 545

 Score = 31.2 bits (69), Expect = 5.7
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
 Frame = +2

Query: 2   KEARSRTGASMLVTSKPAGRQALPGNVIAPLNRFGRKASQGSTRL-IGATARQPKIMSAA 178
           K+A +    S+L+  +P GR+A PG+V    +R   + ++ S  L  G+    P I + A
Sbjct: 277 KQAEAYRAVSLLLR-RPPGREAYPGDVFYLHSRLLERCAKLSDELGAGSMTGLPLIETKA 335

Query: 179 RNTKTVIVN------------QLSMAGATRRPAAPHVVSLARGGMPAQ 286
            +    I              Q  +  A +RPA    VS++R G  AQ
Sbjct: 336 NDVSAYIPTNVISITDGQIFLQSDLFNANQRPAVDVGVSVSRVGGAAQ 383


>sp|Q13XV9|ATPA1_BURXL ATP synthase subunit alpha 1 OS=Burkholderia
           xenovorans (strain LB400) GN=atpA1 PE=3 SV=1
          Length = 510

 Score = 31.2 bits (69), Expect = 5.7
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
 Frame = +2

Query: 35  LVTSKPAGRQALPGNVIAPLNRFGRKASQGSTRLIGATARQPKI-------MSAARNTKT 193
           L+T +P GR+A PG++     R   +A++ S +L G +     I       +SA   T  
Sbjct: 273 LLTREPPGREAYPGDIFYVHARLLERAAKLSAKLGGGSLTALPIAETDAGNLSAYIPTNL 332

Query: 194 V------IVNQLSMAGATRRPAAPHVVSLARGGMPAQ 286
           +      IV   ++  A +RPA    +S++R G  AQ
Sbjct: 333 ISITDGQIVLDAALFAANQRPAVDVGLSVSRVGGKAQ 369


>sp|P97677|DLL1_RAT Delta-like protein 1 OS=Rattus norvegicus
           GN=Dll1 PE=2 SV=1
          Length = 714

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = -1

Query: 331 NRCVGHCLVRTPILSLSWHSSSRQGNYMWSCRPSRRSSHAQLIHNHCLRVPGCRHNLWLP 152
           N+ + +C    P  + +  +++ QG+Y  SCRP    ++ +L  + C   P CR+     
Sbjct: 285 NQDLNYCTHHKPCRNGATCTNTGQGSYTCSCRPGYTGANCELEVDECAPSP-CRNG---G 340

Query: 151 SCGTNQPGASLRCFP 107
           SC   +   S  C P
Sbjct: 341 SCTDLEDSYSCTCPP 355
tr_hit_id A9S1F3
Definition tr|A9S1F3|A9S1F3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 131
Score (bit) 43.5
E-value 0.013
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948654|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_O06, 5'
         (703 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S1F3|A9S1F3_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.013
tr|B4V1E9|B4V1E9_9ACTO Putative uncharacterized protein OS=Strep...    39   0.43 
tr|Q46UE3|Q46UE3_RALEJ Uncharacterized protein UPF0065 OS=Ralsto...    36   2.1  
tr|B8BV43|B8BV43_THAPS Predicted protein OS=Thalassiosira pseudo...    35   4.7  
tr|B4D8J6|B4D8J6_9BACT Putative uncharacterized protein OS=Chtho...    35   6.1  
tr|A8LVW6|A8LVW6_SALAI Lantibiotic dehydratase domain protein OS...    34   8.0  

>tr|A9S1F3|A9S1F3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_162318 PE=4 SV=1
          Length = 345

 Score = 43.5 bits (101), Expect = 0.013
 Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
 Frame = +2

Query: 5   EARSRTGASMLVTSKPAGRQALPGNVIAPLNRFGRKASQGSTRLIGATA--------RQP 160
           EAR+R GA+    +  + ++A      AP++   R+  + ST + G TA        R P
Sbjct: 178 EARARNGAASFPATAASSKRAFS----APISTRSRQIMKSSTEMSGRTAFGRKRNFQRGP 233

Query: 161 KIMSAARNTKTV-IVNQLSMAGATRRPAAPHVVSLARGGMPAQRQNWRPNKAVANASVRR 337
                A    TV +VN  S  G  R  A     ++      + RQ    N     A  +R
Sbjct: 234 NTFPVAAPNMTVSVVNNASNVGTGRGAAHSRRRTVGAAPSVSFRQVSTDNANHFQAQPQR 293

Query: 338 PQTLDSRFASL 370
           P+TLDS FAS+
Sbjct: 294 PKTLDSLFASI 304


>tr|B4V1E9|B4V1E9_9ACTO Putative uncharacterized protein
           OS=Streptomyces sp. Mg1 GN=SSAG_01577 PE=4 SV=1
          Length = 432

 Score = 38.5 bits (88), Expect = 0.43
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 18/90 (20%)
 Frame = -1

Query: 331 NRCVGHCLVR--------TPILSLSWHSSSRQGNYMWSCRPSRRSSHAQLIHNHCLRVPG 176
           N   G+CL          T ++    H+   QG   W   P+ +S H +L H+ CL VPG
Sbjct: 314 NEATGNCLDSFGGASANGTKVVGWDCHAGRNQG---WWYDPATKSVHVELTHDRCLDVPG 370

Query: 175 CRHN------LWLPSCGTNQ----PGASLR 116
             +       LW    G NQ     GA+LR
Sbjct: 371 ANYGAGAALILWNCHGGANQRFVRDGATLR 400


>tr|Q46UE3|Q46UE3_RALEJ Uncharacterized protein UPF0065 OS=Ralstonia
           eutropha (strain JMP134) GN=Reut_B3884 PE=4 SV=1
          Length = 328

 Score = 36.2 bits (82), Expect = 2.1
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +2

Query: 143 ATARQPKIMSAARNTKTVIVNQLSMAGATRRPAAPHVVSLARGGMPA-QRQNWRPNKAVA 319
           AT     ++SA    +   +  L++ GATR PAAP   ++A+ G+P  +   W    A A
Sbjct: 204 ATVMFDTMLSAMPFVRDGKLKALAITGATRSPAAPDTPTIAQAGLPGYEASAWNALLAPA 263

Query: 320 NASVRRPQTLDSRFASLIEERQLQSQF 400
                   TL+    +++++  ++++F
Sbjct: 264 GTPPAILNTLNGALKAVLQDPDVRARF 290


>tr|B8BV43|B8BV43_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_21403 PE=4 SV=1
          Length = 467

 Score = 35.0 bits (79), Expect = 4.7
 Identities = 31/118 (26%), Positives = 53/118 (44%)
 Frame = +2

Query: 47  KPAGRQALPGNVIAPLNRFGRKASQGSTRLIGATARQPKIMSAARNTKTVIVNQLSMAGA 226
           +PA ++  PG  I PL+ FGR  S  ST  I  +   PK      +  T   + +++  A
Sbjct: 67  EPALKRESPGR-IQPLSEFGRAPSNEST--INNSLEFPKEQLYPNSHNTSSSDDVNLTPA 123

Query: 227 TRRPAAPHVVSLARGGMPAQRQNWRPNKAVANASVRRPQTLDSRFASLIEERQLQSQF 400
            RR A  H V   R   P      R ++ +      + + + SR A  ++ R ++++F
Sbjct: 124 DRRWAVDHAVLQTR---PDDYPLERTSRVIHGT---KAEIISSRIAKCLQSRSIEAKF 175


>tr|B4D8J6|B4D8J6_9BACT Putative uncharacterized protein
           OS=Chthoniobacter flavus Ellin428 GN=CfE428DRAFT_5236
           PE=3 SV=1
          Length = 566

 Score = 34.7 bits (78), Expect = 6.1
 Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
 Frame = +2

Query: 20  TGASMLVTSKPAGRQALPGNVIAPLNRFGRKASQGSTRLIGATARQPKIMSAARNTKTVI 199
           T  S  V  +PA     PG  I+ + RFG  + Q ST    +T      + ++  T +  
Sbjct: 147 TTRSAAVIERPASVPVQPGAGISGVPRFGIPSGQHSTGPARSTVESFLGVPSSTTTGSAP 206

Query: 200 VNQLSMAG---ATRRPAAPHVVSLARGGMPAQRQNWRPNKAVANASVRRPQTLDSR 358
            N  + A    AT+RPA P          PAQR +W       N S +  Q ++SR
Sbjct: 207 ANAATHAPSNFATQRPAGPPPA-------PAQRSDWAVRS--QNRSPQWQQRVESR 253


>tr|A8LVW6|A8LVW6_SALAI Lantibiotic dehydratase domain protein
           OS=Salinispora arenicola (strain CNS-205) GN=Sare_3272
           PE=4 SV=1
          Length = 761

 Score = 34.3 bits (77), Expect = 8.0
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 236 PAAPHVVSLARGGMPAQRQNWRPNKAVANASVRRPQTLDSRF--ASLIEERQLQSQF 400
           PA PHV  L  G     R+ W    +   AS+R  + LD     A L++ER L S+F
Sbjct: 636 PALPHVPRLRWGNAVFSRRRWMLQSSEVQASLRGQRDLDLLLGAARLVDERGLPSRF 692