NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948527
Clone id TST38A01NGRL0003_I20
Library
Length 646
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_I20. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
CACAAACTGGTCCAGCCATCTAGACCCCAAAACCTTTAGGTGTTAGGGACCTCTGGTATA
GCCCCGTAGTGGTATAGTGCAAGTGGGTACACAAACAAACAAGATTGAATCTGGAGGCTT
GCATGTGTGTATTCCTATAGCAAATGCTTGCTTGCTTCGAGCTGGATGTGTGATTGCAAG
TTGTGACATTACTTTCTTTGTTAATGCAGGAGTTCCATCTTTCTTTGAACATGTTGTCAC
CCGAGACTCATGATACTGTTAGGGAAGTGATTGAATCTTGTAAATAGGTACATTTTTTTG
TTACTAACATAGGGATTGATAGCAAGTACAAATGTCCCCATCTCAACAAAACCGGGCCAA
TCATGGGCATGTGGAAGGTTCCACCAAACTGAAGAGCTGGTTTTGGCATGGAAGCTAGCA
AAGAGGACAAAAATTGGGGAGTCAAGCACAAGGTCCTTTGTCAATCGCATTTCCTTCTTG
TTTGGAAGTTTTTTGTCGTTGCAAGTTCCTGCTGACGCATGGCATCAAATCACTGGTTGG
GCTTTCTAATGGGTGATTGGTGCGAATCAGCCGACTGCACCGTATTCTAGCCTGGTTTGT
AAAGTAGCAAACATACCGTACCACATTTTTTGATGTGGTCATAGGC
■■Homology search results ■■ -
sp_hit_id Q8R9L3
Definition sp|Q8R9L3|SYI_THETN Isoleucyl-tRNA synthetase OS=Thermoanaerobacter tengcongensis
Align length 127
Score (bit) 31.6
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948527|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_I20, 5'
         (619 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R9L3|SYI_THETN Isoleucyl-tRNA synthetase OS=Thermoanaerobac...    32   3.4  
sp|Q5UPI2|YL102_MIMIV Uncharacterized protein L102 OS=Acanthamoe...    31   4.5  
sp|P51751|RCEM_RHOPH Reaction center protein M chain (Fragment) ...    31   4.5  
sp|Q4G0P3|HYDIN_HUMAN Hydrocephalus-inducing protein homolog OS=...    31   4.5  
sp|P61561|ENW1_GORGO ERV-W1 provirus ancestral Env polyprotein O...    31   4.5  
sp|Q17053|OPSD_APIME Rhodopsin, long-wavelength OS=Apis mellifer...    30   7.7  
sp|P06909|CFAH_MOUSE Complement factor H OS=Mus musculus GN=Cfh ...    30   9.9  

>sp|Q8R9L3|SYI_THETN Isoleucyl-tRNA synthetase OS=Thermoanaerobacter
            tengcongensis GN=ileS PE=3 SV=1
          Length = 932

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 10/127 (7%)
 Frame = -3

Query: 491  KLPNKKEMRLTKDLVLDSPIFVLFASFHAKTSSSVWWNLPHAH----------DWPGFVE 342
            K   +K  + T  ++LD+ +  L A   A TS  +WW++ H            DWP   E
Sbjct: 739  KSKERKAAQTTLYIILDT-LVKLMAPVLAFTSEEIWWHMKHDRNNNFESVQLADWPQVKE 797

Query: 341  MGTFVLAINPYVSNKKMYLFTRFNHFPNSIMSLG*QHVQRKMELLH*QRK*CHNLQSHIQ 162
                    NPY+  K   LF               + + + +E+   ++K  H+L + + 
Sbjct: 798  EYD-----NPYIIEKWEKLFDIR------------KDISKALEIARSEKKIGHSLDAQVD 840

Query: 161  LEASKHL 141
            +  S  L
Sbjct: 841  IYPSSEL 847


>sp|Q5UPI2|YL102_MIMIV Uncharacterized protein L102 OS=Acanthamoeba
           polyphaga mimivirus GN=MIMI_L102 PE=4 SV=1
          Length = 237

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = -1

Query: 337 GHLYLLSIPMLVTK----KCTYLQDSITSLTVS*VSGDNMFKERWNSCINKESNVTTCNH 170
           GHL   +   ++ K    KC Y+ D I +     ++ +N+  +R+   +N + N     H
Sbjct: 133 GHLVQFNFDEIIIKNNLPKCQYITDIIVN-----INNNNIIPKRFIFTLNNQDN-----H 182

Query: 169 TSSSKQASICYRNTH 125
             S  Q  + Y+N H
Sbjct: 183 IFSQTQPKVTYKNLH 197


>sp|P51751|RCEM_RHOPH Reaction center protein M chain (Fragment)
           OS=Rhodospirillum photometricum GN=pufM PE=3 SV=2
          Length = 256

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
 Frame = -1

Query: 451 LCLTPQFLSSLLASMPKPALQFGGTFHMPMIGPVLLRWGHLY-----LLSIPMLVTKKCT 287
           L LT  F+  LL      A+ FG   H+       LR+G+LY     +LSI  L      
Sbjct: 155 LYLTLGFIRPLLLGNWGEAVPFGLFAHLDWTAAFSLRYGNLYYNPFHMLSIAFLYGSAVL 214

Query: 286 YLQDSITSLTVS*VSGD 236
           +     T L VS + GD
Sbjct: 215 FAMHGATILAVSHLGGD 231


>sp|Q4G0P3|HYDIN_HUMAN Hydrocephalus-inducing protein homolog OS=Homo
            sapiens GN=HYDIN PE=1 SV=2
          Length = 5120

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = -1

Query: 310  MLVTKKCTYLQDSITSLTVS*VSGDNMFKERWNSCINKESNVTTCNHTSSSKQASICYRN 131
            M V  KC     SIT LT +  +  N ++   N C+  E N       + S QA +C   
Sbjct: 4188 MNVEIKCKDRTGSITLLTPNQTNIINFYEVELNECVQCEFNFINTGKFTFSFQAQLCGSK 4247

Query: 130  THMQASRFN 104
            T +Q   F+
Sbjct: 4248 TLLQYLEFS 4256


>sp|P61561|ENW1_GORGO ERV-W1 provirus ancestral Env polyprotein
           OS=Gorilla gorilla gorilla GN=ERVWE1 PE=3 SV=1
          Length = 538

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -1

Query: 205 INKESNVTTCNHTSSSKQASICYRNTHMQASRFNLVCLCTH--LHYTTTGLYQRSLTPKG 32
           + +  N+   +H S SK       +THM  + +N   LC H   HY T  +   S  P G
Sbjct: 41  MRRPGNIDAPSHRSFSKGTPTFTAHTHMPRNCYNSATLCMHANTHYWTGKMINPS-CPGG 99

Query: 31  FGV 23
            GV
Sbjct: 100 LGV 102


>sp|Q17053|OPSD_APIME Rhodopsin, long-wavelength OS=Apis mellifera
           PE=1 SV=1
          Length = 377

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 19/85 (22%), Positives = 38/85 (44%)
 Frame = -1

Query: 580 VQSADSHQSPIRKPNQ*FDAMRQQELATTKNFQTRRKCD*QRTLCLTPQFLSSLLASMPK 401
           +Q+  +H+  +R+  +    M    L +++N  T  +C   +   +T       +A  P 
Sbjct: 240 IQAVAAHEKNMREQAK---KMNVASLRSSENQNTSAECKLAKVALMTISLW--FMAWTPY 294

Query: 400 PALQFGGTFHMPMIGPVLLRWGHLY 326
             + F G F++  I P+   WG L+
Sbjct: 295 LVINFSGIFNLVKISPLFTIWGSLF 319


>sp|P06909|CFAH_MOUSE Complement factor H OS=Mus musculus GN=Cfh PE=1
            SV=1
          Length = 1234

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 216  HLSLNMLSPETHDTVREVIESCK*VHFFVTNIGIDSKYKCPHLNKTGPIMGMWKVPP 386
            H S+N+  P + +  R+ IES    H    +   D  ++ P  N+    MG W  PP
Sbjct: 875  HGSINL--PRSSEERRDSIESSSHEHGTTFSYVCDDGFRIPEENRITCYMGKWSTPP 929
tr_hit_id A9TTH5
Definition tr|A9TTH5|A9TTH5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 24
Score (bit) 42.0
E-value 0.029
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948527|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_I20, 5'
         (619 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TTH5|A9TTH5_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.029
tr|A7QYP1|A7QYP1_VITVI Chromosome undetermined scaffold_252, who...    41   0.049
tr|A3C645|A3C645_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.14 
tr|O97257|O97257_PLAF7 Putative uncharacterized protein MAL3P5.2...    39   0.25 
tr|Q9C951|Q9C951_ARATH Putative uncharacterized protein T7P1.16 ...    39   0.32 
tr|Q8W3E0|Q8W3E0_ORYSJ Putative dentin phosphoryn protein OS=Ory...    39   0.32 
tr|Q337H4|Q337H4_ORYSJ Os10g0497000 protein OS=Oryza sativa subs...    39   0.32 
tr|B8BHP3|B8BHP3_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.32 
tr|B8A2L3|B8A2L3_MAIZE Putative uncharacterized protein OS=Zea m...    37   1.2  
tr|B4F8S5|B4F8S5_MAIZE Putative uncharacterized protein OS=Zea m...    37   1.2  
tr|Q1D7D2|Q1D7D2_MYXXD Conserved domain protein OS=Myxococcus xa...    34   7.9  

>tr|A9TTH5|A9TTH5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171856 PE=4 SV=1
          Length = 925

 Score = 42.0 bits (97), Expect = 0.029
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +3

Query: 213 FHLSLNMLSPETHDTVREVIESCK 284
           FH+SLNMLSPETH  + EVI+SC+
Sbjct: 890 FHMSLNMLSPETHAAITEVIDSCQ 913


>tr|A7QYP1|A7QYP1_VITVI Chromosome undetermined scaffold_252, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010273001 PE=4 SV=1
          Length = 706

 Score = 41.2 bits (95), Expect = 0.049
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = +3

Query: 213 FHLSLNMLSPETHDTVREVIESCK 284
           FH+SLNMLSPET   V EVIESC+
Sbjct: 681 FHMSLNMLSPETQKAVSEVIESCR 704


>tr|A3C645|A3C645_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_030767 PE=4 SV=1
          Length = 1098

 Score = 39.7 bits (91), Expect = 0.14
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +3

Query: 204  MQEFHLSLNMLSPETHDTVREVIESCK 284
            ++ FHL LNM++ ETH  V EVIE CK
Sbjct: 1070 IESFHLQLNMITEETHSAVTEVIEKCK 1096


>tr|O97257|O97257_PLAF7 Putative uncharacterized protein MAL3P5.2
           OS=Plasmodium falciparum (isolate 3D7) GN=MAL3P5.2 PE=4
           SV=1
          Length = 1096

 Score = 38.9 bits (89), Expect = 0.25
 Identities = 22/75 (29%), Positives = 38/75 (50%)
 Frame = -1

Query: 319 SIPMLVTKKCTYLQDSITSLTVS*VSGDNMFKERWNSCINKESNVTTCNHTSSSKQASIC 140
           S P L++K   Y +D I        S DN     +N+  +KE+N TT N+ ++    +IC
Sbjct: 549 SFPFLLSKNIIYFEDEIGR------SRDNTI---YNNVYDKETNKTTTNNNNNDNNDNIC 599

Query: 139 YRNTHMQASRFNLVC 95
             N H+ ++  + +C
Sbjct: 600 SNNDHICSNNNDHIC 614


>tr|Q9C951|Q9C951_ARATH Putative uncharacterized protein T7P1.16
           OS=Arabidopsis thaliana GN=At1g61030 PE=4 SV=1
          Length = 840

 Score = 38.5 bits (88), Expect = 0.32
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = +3

Query: 213 FHLSLNMLSPETHDTVREVIESCK 284
           FH +L+M+ PETH  V EVIESCK
Sbjct: 815 FHTTLDMIPPETHKVVMEVIESCK 838


>tr|Q8W3E0|Q8W3E0_ORYSJ Putative dentin phosphoryn protein OS=Oryza
           sativa subsp. japonica GN=OSJNBa0017E08.7 PE=4 SV=1
          Length = 888

 Score = 38.5 bits (88), Expect = 0.32
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = +3

Query: 213 FHLSLNMLSPETHDTVREVIESCK 284
           FHL LNM++ ETH  V EVIE CK
Sbjct: 863 FHLQLNMITEETHSAVTEVIEKCK 886


>tr|Q337H4|Q337H4_ORYSJ Os10g0497000 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0497000 PE=4 SV=1
          Length = 887

 Score = 38.5 bits (88), Expect = 0.32
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = +3

Query: 213 FHLSLNMLSPETHDTVREVIESCK 284
           FHL LNM++ ETH  V EVIE CK
Sbjct: 862 FHLQLNMITEETHSAVTEVIEKCK 885


>tr|B8BHP3|B8BHP3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_34181 PE=4 SV=1
          Length = 884

 Score = 38.5 bits (88), Expect = 0.32
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = +3

Query: 213 FHLSLNMLSPETHDTVREVIESCK 284
           FHL LNM++ ETH  V EVIE CK
Sbjct: 859 FHLQLNMITEETHSAVTEVIEKCK 882


>tr|B8A2L3|B8A2L3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 851

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +3

Query: 213 FHLSLNMLSPETHDTVREVIESCK 284
           FHL LNM++ ETH  V EVIE C+
Sbjct: 826 FHLQLNMMTRETHSAVTEVIERCR 849


>tr|B4F8S5|B4F8S5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 336

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +3

Query: 213 FHLSLNMLSPETHDTVREVIESCK 284
           FHL LNM++ ETH  V EVIE C+
Sbjct: 311 FHLQLNMMTRETHSAVTEVIERCR 334