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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948521
Clone id TST38A01NGRL0003_I14
Library
Length 690
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_I14. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CTGTTTCCTCTTCTTTCCTTCTGTCTCCAACCTGGCTATGGCGACATCTCCCCCTCCTTT
CCCTTCGGACGTGCGGCCATTCTCGGTGAACTGTCTCACTTCGGCGTTTTTCATCAGAGT
CCGCACATAGTGATTGAGCTCCCCCATTTTTTGGATCCGCTGCCTTTAAGCTCTTCCATG
CTTGTAGCTGTACTTAGAATGTATGATCTGCTGCTTTTTCGGGCGAAGACTGCTGAGGAA
GTAGCTGGGCTCGCTCGTTTCAATTTCCTGCGGAGTCACTGAGGCAGGCCTGGTACCTCG
CTATTCTCTACAAGTAGTTTAAGGTTTGATTTTTAGCATATTGGGACAGGTTACTTTTGT
TTGAGCTGCCTGGACGCTCTGCAACAAGTGCAGAATGCCGCAGTTCACTCGGTGCTCCTA
TTTGCAGCAGCACACTGATTGCTTAGCGGGTATACTTTAGACTGTCGAAGGTTGGGCAAG
CAGGTCTTGCCTATGATTCTATGGAAGATCTCAAGACCATGGATAGTGCAAAGTTTGACA
CCTGCAAGGTTATCATTGACGAGGTGGAAGAGGAGCTGGGTGCCCTTAACATGTCTTCGG
ATCATTCTTCAGCATCTCGAGAGGAAATTCTGGCATCCATTGAGACTCGACAGAAAGTTG
CTGCTGCTAAGCAGTTCATAGAAAATCATT
■■Homology search results ■■ -
sp_hit_id Q6AZ50
Definition sp|Q6AZ50|ATG3_RAT Autophagy-related protein 3 OS=Rattus norvegicus
Align length 56
Score (bit) 32.0
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948521|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_I14, 5'
         (677 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6AZ50|ATG3_RAT Autophagy-related protein 3 OS=Rattus norvegi...    32   3.1  
sp|Q04F76|Y987_OENOB Putative metalloprotease OEOE_0987 OS=Oenoc...    31   5.3  
sp|P17611|NODG_AZOBR Nodulation protein G OS=Azospirillum brasil...    31   6.9  
sp|P0C6P5|RGNEF_RAT Rho-guanine nucleotide exchange factor OS=Ra...    30   9.0  
sp|P97433|RGNEF_MOUSE Rho-guanine nucleotide exchange factor OS=...    30   9.0  

>sp|Q6AZ50|ATG3_RAT Autophagy-related protein 3 OS=Rattus norvegicus
           GN=Atg3 PE=2 SV=1
          Length = 314

 Score = 32.0 bits (71), Expect = 3.1
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 497 LKTMDSAKFDTCKVIIDEVEEEL--GALNMSSDHSSASREEILASIETRQKVAAAK 658
           L++ DS K   C V+ DE EEE    A +M     S   E   A+++TR+ V A K
Sbjct: 128 LESKDSIKLQDCSVLCDEEEEEEEGEAADMEEYEESGLLETDEATLDTRRIVEACK 183


>sp|Q04F76|Y987_OENOB Putative metalloprotease OEOE_0987
           OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=OEOE_0987
           PE=3 SV=1
          Length = 153

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +2

Query: 533 KVIIDEVEEELGALNMSSDHSSASREEILASIETRQKVAAAKQFI 667
           ++ ID V EELG L +S DH+ A  EE L S        A   F+
Sbjct: 77  RIHIDGVAEELGDLFISLDHAHAQAEEYLHSYNRELAYLAVHGFL 121


>sp|P17611|NODG_AZOBR Nodulation protein G OS=Azospirillum
           brasilense GN=nodG PE=3 SV=2
          Length = 246

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 10/44 (22%), Positives = 29/44 (65%)
 Frame = +2

Query: 509 DSAKFDTCKVIIDEVEEELGALNMSSDHSSASREEILASIETRQ 640
           D + F++CK ++ ++E +LG +++  +++  +R++  A ++  Q
Sbjct: 61  DVSDFESCKAMVAKIEADLGPVDILVNNAGITRDKFFAKMDKAQ 104


>sp|P0C6P5|RGNEF_RAT Rho-guanine nucleotide exchange factor OS=Rattus
            norvegicus GN=Rgnef PE=1 SV=1
          Length = 1700

 Score = 30.4 bits (67), Expect = 9.0
 Identities = 21/54 (38%), Positives = 31/54 (57%)
 Frame = +3

Query: 63   AILGELSHFGVFHQSPHIVIELPHFLDPLPLSSSMLVAVLRMYDLLLFRAKTAE 224
            A LGELS F   H  PH++I+ P   +P P ++S+L A LR  + L    K ++
Sbjct: 1240 AELGELSGFEDVHLEPHLLIK-PDPGEP-PQAASLLAAALREAESLQVAVKASK 1291


>sp|P97433|RGNEF_MOUSE Rho-guanine nucleotide exchange factor OS=Mus
            musculus GN=Rgnef PE=1 SV=1
          Length = 1693

 Score = 30.4 bits (67), Expect = 9.0
 Identities = 21/54 (38%), Positives = 31/54 (57%)
 Frame = +3

Query: 63   AILGELSHFGVFHQSPHIVIELPHFLDPLPLSSSMLVAVLRMYDLLLFRAKTAE 224
            A LGELS F   H  PH++I+ P   +P P ++S+L A LR  + L    K ++
Sbjct: 1238 AELGELSGFEDVHLEPHLLIK-PDPGEP-PQAASLLAAALREAESLQVAVKASK 1289
tr_hit_id A9SJX7
Definition tr|A9SJX7|A9SJX7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 55
Score (bit) 41.6
E-value 0.047
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948521|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_I14, 5'
         (677 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SJX7|A9SJX7_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.047
tr|A9SKA7|A9SKA7_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.23 
tr|Q9SIM2|Q9SIM2_ARATH Putative uncharacterized protein At2g2047...    39   0.30 
tr|Q1PF34|Q1PF34_ARATH Protein kinase OS=Arabidopsis thaliana GN...    39   0.30 
tr|A9RQ93|A9RQ93_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.30 
tr|A7NTW4|A7NTW4_VITVI Chromosome chr18 scaffold_1, whole genome...    39   0.30 
tr|A9SKA9|A9SKA9_PHYPA Predicted protein OS=Physcomitrella paten...    37   1.5  
tr|A7P4N8|A7P4N8_VITVI Chromosome chr4 scaffold_6, whole genome ...    37   1.5  
tr|Q9SN01|Q9SN01_ARATH Putative uncharacterized protein F4I10.10...    36   2.6  
tr|Q8GUH5|Q8GUH5_ARATH Putative uncharacterized protein At4g3308...    36   2.6  
tr|Q2V3C2|Q2V3C2_ARATH Uncharacterized protein At4g33080.2 OS=Ar...    36   2.6  
tr|A7NXD3|A7NXD3_VITVI Chromosome chr5 scaffold_2, whole genome ...    35   3.3  
tr|A5BWH0|A5BWH0_VITVI Putative uncharacterized protein OS=Vitis...    35   3.3  
tr|Q7Y0S4|Q7Y0S4_RAPSA Protein kinase OS=Raphanus sativus GN=RsN...    35   5.7  
tr|A9SJX9|A9SJX9_PHYPA Predicted protein OS=Physcomitrella paten...    35   5.7  
tr|Q9LW66|Q9LW66_ARATH Protein kinase OS=Arabidopsis thaliana GN...    34   7.4  
tr|Q94JZ0|Q94JZ0_ARATH Putative uncharacterized protein At2g1940...    34   9.7  
tr|O64573|O64573_ARATH Putative uncharacterized protein At2g1940...    34   9.7  

>tr|A9SJX7|A9SJX7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165339 PE=4 SV=1
          Length = 726

 Score = 41.6 bits (96), Expect = 0.047
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
 Frame = +2

Query: 533 KVIIDEVEEELGALNMSSDHSSASR-------EEILASIETRQKVAAAKQFIENH 676
           K ++   ++ +G L++ SD             ++ LAS  TRQKVAAAKQ+IENH
Sbjct: 138 KTVLSTAQDRMGGLDVGSDEGKEGGNTDGLQLDDNLASSITRQKVAAAKQYIENH 192


>tr|A9SKA7|A9SKA7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165372 PE=4 SV=1
          Length = 587

 Score = 39.3 bits (90), Expect = 0.23
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
 Frame = +2

Query: 533 KVIIDEVEEELGALNMSSDHSSASR-------EEILASIETRQKVAAAKQFIENH 676
           K ++   ++ +G L++ S+    +        E+ LAS  TRQKVAAAKQ+IENH
Sbjct: 30  KTVLATAQDGMGGLHVGSEDGRRAGIVDGVPPEDNLASSITRQKVAAAKQYIENH 84


>tr|Q9SIM2|Q9SIM2_ARATH Putative uncharacterized protein At2g20470
           OS=Arabidopsis thaliana GN=At2g20470 PE=2 SV=1
          Length = 596

 Score = 38.9 bits (89), Expect = 0.30
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +2

Query: 566 GALNMSSDHSSASREEILASIETRQKVAAAKQFIENH 676
           G  N S+D  +   +E   S  T+QKVAAAKQ+IENH
Sbjct: 29  GGSNGSADEHNVETDEEAVSNTTKQKVAAAKQYIENH 65


>tr|Q1PF34|Q1PF34_ARATH Protein kinase OS=Arabidopsis thaliana
           GN=At2g20470 PE=2 SV=1
          Length = 569

 Score = 38.9 bits (89), Expect = 0.30
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +2

Query: 566 GALNMSSDHSSASREEILASIETRQKVAAAKQFIENH 676
           G  N S+D  +   +E   S  T+QKVAAAKQ+IENH
Sbjct: 29  GGSNGSADEHNVETDEEAVSNTTKQKVAAAKQYIENH 65


>tr|A9RQ93|A9RQ93_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_117953 PE=4 SV=1
          Length = 503

 Score = 38.9 bits (89), Expect = 0.30
 Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
 Frame = +2

Query: 563 LGALNMSSDHSSASR-------EEILASIETRQKVAAAKQFIENH 676
           +G L++ SD    S        ++ LAS  TRQKVAAAKQ+IENH
Sbjct: 1   MGGLDVGSDEGRGSENADGLQLDDNLASSITRQKVAAAKQYIENH 45


>tr|A7NTW4|A7NTW4_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014822001
           PE=4 SV=1
          Length = 521

 Score = 38.9 bits (89), Expect = 0.30
 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +2

Query: 560 ELGALNMSSD-HSSASREEILASIETRQKVAAAKQFIENH 676
           + G LNM +D +   +++  ++S  TRQK AAAKQFIENH
Sbjct: 9   KFGPLNMKADPYLDCAQDVAVSSPVTRQKAAAAKQFIENH 48


>tr|A9SKA9|A9SKA9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_131231 PE=4 SV=1
          Length = 539

 Score = 36.6 bits (83), Expect = 1.5
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = +2

Query: 560 ELGALNMSSDHSSASREEILASIETRQKVAAAKQFIENH 676
           E G   + S    A+  + L S  TRQKVAAAKQ+IENH
Sbjct: 32  ESGKDPLKSPRPDANASDELPSSITRQKVAAAKQYIENH 70


>tr|A7P4N8|A7P4N8_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032222001
           PE=4 SV=1
          Length = 445

 Score = 36.6 bits (83), Expect = 1.5
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +2

Query: 599 ASREEILASIETRQKVAAAKQFIENH 676
           +  EE+L S  T +KVAAAKQFIENH
Sbjct: 5   SGEEEVLGSSLTMEKVAAAKQFIENH 30


>tr|Q9SN01|Q9SN01_ARATH Putative uncharacterized protein F4I10.10
           (Putative uncharacterized protein AT4g33080)
           OS=Arabidopsis thaliana GN=F4I10.10 PE=4 SV=1
          Length = 483

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +2

Query: 587 DHSSASREEILASIETRQKVAAAKQFIENH 676
           +  + + EE+L S  T +KVAAAKQ+IENH
Sbjct: 6   EEENGTDEEVLGSSLTMEKVAAAKQYIENH 35


>tr|Q8GUH5|Q8GUH5_ARATH Putative uncharacterized protein At4g33080
           (At4g33080) OS=Arabidopsis thaliana GN=At4g33080 PE=2
           SV=1
          Length = 519

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +2

Query: 587 DHSSASREEILASIETRQKVAAAKQFIENH 676
           +  + + EE+L S  T +KVAAAKQ+IENH
Sbjct: 6   EEENGTDEEVLGSSLTMEKVAAAKQYIENH 35