DK948517
Clone id TST38A01NGRL0003_I10
Library
Length 702
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_I10. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
CCTCCTTGTACAGCACAGATTATCGGCCCTCATCATGGCTCTGCTGCAAGCTGCCAACTC
CATTTCCTGCACCCACAAGCTCTCCCTTCCCGTACAACGCCCCGCCCACAGTAGGATTTG
CTCTTCTCTCTCTACGCCCACCCTCAAGGGAGTGCCTCCTCCCTCTTTAAGGTTCGGATC
CTCTTTTTTCAATGGCTCCAGCCTGCTGAAGGTGAAGAGAGAGATACAAGAGCTGAAGAG
CGGCAGCAATTCGAGTAAGGGGGGAGCTTGCACAGCAACCAGTTCTATCACTCTCTCGGG
CGAGTTGCTGCGATGGATCTTTGCCGGCGCAGCGGCGGTGCTTATGTACCTCAAGAACAC
ATCTATTAACAAGAATATTCTGGTTCCATTGTTGGCATTGCAAGCTCCACGCGATGTTGT
CACAGCGGTCCGGGGTGAATATGGACTTTGGGCGGCGTTTCTAGCTCTATTGGTTAGGTT
GTTTTACCAACTTCCAGGGGAGCTCGAGCTACCGCTTGTGCTTGTGTTGCTATTGATCAC
CGCACCTCTTCAAGTTTTGGACATCAGAAGGACAACGGCCGCGCTAGTGGTGAGTGCATG
TGTGGCAGCATACCTAGTGTACCAACATGTGAATGGNGCAGGAGGAGTGAAGGAGTCTTT
CAAAGGAGGTGCCTTGTTGGCTAGCTTGGCTGTTATCATCCT
■■Homology search results ■■ -
sp_hit_id Q6NYU2
Definition sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio
Align length 25
Score (bit) 29.6
E-value 4.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK948517|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_I10, 5'
(702 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain O... 30 4.1
sp|Q9QYX3|RNAS1_MUSPA Ribonuclease pancreatic OS=Mus pahari GN=R... 32 4.4
sp|Q8SQ05|RNAS1_LAGLA Ribonuclease pancreatic OS=Lagothrix lagot... 31 7.4
sp|Q9WUS3|RNAS1_LEOED Ribonuclease pancreatic OS=Leopoldamys edw... 30 9.7

>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain
OS=Danio rerio GN=helz PE=2 SV=1
Length = 1860

Score = 29.6 bits (65), Expect(2) = 4.1
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +1

Query: 28 PHHGSAASCQLHFLHPQALPSRTTP 102
PH SAAS Q H P LPS+ TP
Sbjct: 1767 PHPASAASLQHHGQFPPLLPSKQTP 1791



Score = 20.4 bits (41), Expect(2) = 4.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3

Query: 102 PPTVGFALLSLRPPSRECLLP 164
PPT+ +A PP +LP
Sbjct: 1808 PPTMSYASALRAPPKPRPMLP 1828


>sp|Q9QYX3|RNAS1_MUSPA Ribonuclease pancreatic OS=Mus pahari
GN=Rnase1 PE=2 SV=1
Length = 149

Score = 31.6 bits (70), Expect = 4.4
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1

Query: 163 LFKVRILFFQWLQPAEGEERDTRAEERQQFE*GGSLHSNQFY 288
LF + +L W+QP+ G+E + ERQ + GS +++ Y
Sbjct: 9 LFPLFVLLLGWVQPSLGKESSAQKFERQHMDSSGSSNNSPTY 50


>sp|Q8SQ05|RNAS1_LAGLA Ribonuclease pancreatic OS=Lagothrix
lagotricha GN=RNASE1 PE=3 SV=1
Length = 156

Score = 30.8 bits (68), Expect = 7.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1

Query: 178 ILFFQWLQPAEGEERDTRAEERQQFE*GGSLHSNQFY 288
+L W+QP+ G+E + +RQ + GSL SN Y
Sbjct: 17 LLVLGWVQPSLGKESRAKKFQRQHMDSDGSLSSNPTY 53


>sp|Q9WUS3|RNAS1_LEOED Ribonuclease pancreatic OS=Leopoldamys
edwardsi GN=RNASE1 PE=2 SV=1
Length = 149

Score = 30.4 bits (67), Expect = 9.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1

Query: 163 LFKVRILFFQWLQPAEGEERDTRAEERQQFE*GGSLHSNQFY 288
LF + +L W+QP+ G+E + RQ + GS +S+ Y
Sbjct: 9 LFSLLVLVLGWVQPSLGKESSAQKFNRQHMDTEGSSNSSPTY 50


tr_hit_id B8LQ60
Definition tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 155
Score (bit) 132.0
E-value 2.0e-29
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK948517|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_I10, 5'
(702 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea... 132 2e-29
tr|Q84LB5|Q84LB5_CRYJA Cold acclimation protein COR413-TM1 OS=Cr... 117 5e-25
tr|B6T8R2|B6T8R2_MAIZE Cold acclimation WCOR413-like protein gam... 116 2e-24
tr|Q688W8|Q688W8_ORYSJ Os05g0566800 protein OS=Oryza sativa subs... 109 1e-22
tr|Q84XU8|Q84XU8_ORYSJ Cold acclimation protein COR413-TM1 OS=Or... 109 2e-22
tr|B8AWS3|B8AWS3_ORYSI Putative uncharacterized protein OS=Oryza... 109 2e-22
tr|Q84XU9|Q84XU9_WHEAT Cold acclimation protein COR413-TM1 OS=Tr... 106 1e-21
tr|Q8W0V1|Q8W0V1_HORVD Cold acclimation WCOR413-like protein gam... 105 2e-21
tr|A7QQJ9|A7QQJ9_VITVI Chromosome undetermined scaffold_143, who... 100 2e-19
tr|A3B6W4|A3B6W4_ORYSJ Putative uncharacterized protein OS=Oryza... 94 6e-18
tr|Q9C7R2|Q9C7R2_ARATH Putative uncharacterized protein F15D2.29... 94 8e-18
tr|Q94AL8|Q94AL8_ARATH Putative uncharacterized protein At1g2939... 94 8e-18
tr|Q8RXM0|Q8RXM0_ARATH Putative uncharacterized protein At1g2939... 94 1e-17
tr|Q8L813|Q8L813_ARATH Putative uncharacterized protein At1g2939... 92 3e-17
tr|Q84LB3|Q84LB3_MAIZE Truncated cold acclimation protein COR413... 87 1e-15
tr|B7ZY82|B7ZY82_MAIZE Putative uncharacterized protein OS=Zea m... 87 1e-15
tr|A9RCW6|A9RCW6_PHYPA Predicted protein (Fragment) OS=Physcomit... 81 7e-14
tr|Q93WS4|Q93WS4_PHYPA Cold acclimation protein WCOR413-like pro... 68 5e-10
tr|A9S4D3|A9S4D3_PHYPA Predicted protein OS=Physcomitrella paten... 68 5e-10
tr|B5TV68|B5TV68_CAMSI Cold acclimation protein WCOR413-like pro... 65 3e-09
tr|A9SZ92|A9SZ92_PHYPA Predicted protein OS=Physcomitrella paten... 63 2e-08
tr|A9S0S4|A9S0S4_PHYPA Predicted protein OS=Physcomitrella paten... 62 5e-08
tr|A9RWC5|A9RWC5_PHYPA Predicted protein OS=Physcomitrella paten... 61 6e-08
tr|P93613|P93613_WHEAT Cold acclimation protein WCOR413 OS=Triti... 56 2e-06
tr|A9PCB7|A9PCB7_POPTR Putative uncharacterized protein OS=Popul... 56 2e-06
tr|A9PBY4|A9PBY4_POPTR Putative uncharacterized protein OS=Popul... 56 3e-06
tr|A7XFB7|A7XFB7_PONTR Cold acclimation WCOR413-like protein OS=... 56 3e-06
tr|A9X4J8|A9X4J8_9MAGN Cold acclimation protein COR413-PM1 OS=Ch... 55 3e-06
tr|Q9FUW4|Q9FUW4_ORYSJ Os03g0767800 protein OS=Oryza sativa subs... 54 1e-05
tr|A9NT54|A9NT54_PICSI Putative uncharacterized protein OS=Picea... 54 1e-05

>tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 245

Score = 132 bits (332), Expect = 2e-29
Identities = 68/155 (43%), Positives = 94/155 (60%)
Frame = +2

Query: 233 LKSGSNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPR 412
+ S + SS GGA + S+ LS E LRW+F AA VLM K+T+INK+ LVPLLAL+AP
Sbjct: 75 IHSIARSSYGGALSTECSVALSTEALRWLFGVAAVVLMLSKHTAINKSFLVPLLALEAPG 134

Query: 413 DVVTAVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVV 592
DV + +RG+YGLW AFL LVRLFY ++R T A +V+
Sbjct: 135 DVFSWIRGDYGLWTAFLVFLVRLFYYIPGELELPFLFVLLVVIAPYQATNLRGTQAGMVI 194

Query: 593 SACVAAYLVYQHVNGAGGVKESFKGGALLASLAVI 697
S +AYL+YQHV GG+K++F G ++ ++A +
Sbjct: 195 SMAASAYLIYQHVTKTGGIKKAFDQGVVVPTIAAV 229


>tr|Q84LB5|Q84LB5_CRYJA Cold acclimation protein COR413-TM1
OS=Cryptomeria japonica PE=2 SV=1
Length = 241

Score = 117 bits (294), Expect = 5e-25
Identities = 63/155 (40%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Frame = +2

Query: 236 KSGSNSSKGGACT---ATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQA 406
K G +GG + A + S E LRW+FA ++ VLM+ K+T I K+ LVPLLALQA
Sbjct: 69 KLGGRGKRGGTSSIQCARVDLLYSTEALRWLFAVSSVVLMFSKHTVIRKSFLVPLLALQA 128

Query: 407 PRDVVTAVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAAL 586
P DVV+ +RG+YGLW AF L+RLFY +R T A++
Sbjct: 129 PGDVVSWIRGDYGLWTAFSIFLIRLFYPIPGEMELPLLFVLLVIIAPSQASSMRGTQASM 188

Query: 587 VVSACVAAYLVYQHVNGAGGVKESFKGGALLASLA 691
V+S ++AYL +QH AG VK++F+ +++AS+A
Sbjct: 189 VISTAISAYLSFQHFTNAGSVKKAFEQNSVVASIA 223


>tr|B6T8R2|B6T8R2_MAIZE Cold acclimation WCOR413-like protein gamma
form OS=Zea mays PE=2 SV=1
Length = 226

Score = 116 bits (290), Expect = 2e-24
Identities = 60/148 (40%), Positives = 87/148 (58%)
Frame = +2

Query: 254 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 433
S+G A SS LS ++WI AGA+AVL+ K T+I+K+ LVP ALQAP +++ ++
Sbjct: 68 SRGAAAVCHSSAHLSARTIQWISAGASAVLLVAKGTAIHKSFLVPFFALQAPCSIISWIK 127

Query: 434 GEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACVAAY 613
G+YG W AFLALLVRLF+ D+R T V+S +AAY
Sbjct: 128 GDYGQWTAFLALLVRLFFFIPGELELPLSTMLLVSVAPYQFMDLRGTQGGAVLSLAIAAY 187

Query: 614 LVYQHVNGAGGVKESFKGGALLASLAVI 697
L +QH GG ++F+ G+++A+LA+I
Sbjct: 188 LAFQHFTRVGGPGKAFEQGSIVATLAII 215


>tr|Q688W8|Q688W8_ORYSJ Os05g0566800 protein OS=Oryza sativa subsp.
japonica GN=OJ1781_H11.9 PE=2 SV=1
Length = 222

Score = 109 bits (273), Expect = 1e-22
Identities = 56/151 (37%), Positives = 85/151 (56%)
Frame = +2

Query: 245 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 424
++ +GGA SS LS ++W+ AGA AVL+ K T+I+K+ LVPL AL AP V++
Sbjct: 61 ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120

Query: 425 AVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACV 604
++ +YG W AFLALLVRLF+ ++R T +S +
Sbjct: 121 WIKSDYGQWTAFLALLVRLFFSIPGELELPLSTMLLVSVAPYQLMNLRGTQGGAALSLAL 180

Query: 605 AAYLVYQHVNGAGGVKESFKGGALLASLAVI 697
A YL +QH GG+ ++F G+++A+LA+I
Sbjct: 181 AGYLAFQHFTRVGGLGKAFDQGSIIATLAII 211


>tr|Q84XU8|Q84XU8_ORYSJ Cold acclimation protein COR413-TM1 OS=Oryza
sativa subsp. japonica PE=2 SV=1
Length = 222

Score = 109 bits (272), Expect = 2e-22
Identities = 56/151 (37%), Positives = 85/151 (56%)
Frame = +2

Query: 245 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 424
++ +GGA SS LS ++W+ AGA AVL+ K T+I+K+ LVPL AL AP V++
Sbjct: 61 ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPSSVIS 120

Query: 425 AVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACV 604
++ +YG W AFLALLVRLF+ ++R T +S +
Sbjct: 121 WIKSDYGQWTAFLALLVRLFFCIPGELELPLSTMLLVSVAPYQLMNLRGTQGGAALSLAL 180

Query: 605 AAYLVYQHVNGAGGVKESFKGGALLASLAVI 697
A YL +QH GG+ ++F G+++A+LA+I
Sbjct: 181 AGYLAFQHFTRVGGLGKAFDQGSIIATLAII 211


>tr|B8AWS3|B8AWS3_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_21013 PE=4 SV=1
Length = 222

Score = 109 bits (272), Expect = 2e-22
Identities = 56/151 (37%), Positives = 85/151 (56%)
Frame = +2

Query: 245 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 424
++ +GGA SS LS ++W+ AGA AVL+ K T+I+K+ LVPL AL AP V++
Sbjct: 61 ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120

Query: 425 AVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACV 604
++ +YG W AFLALLVRLF+ ++R T +S +
Sbjct: 121 WIKSDYGHWTAFLALLVRLFFSIPGELELPLSTMLLVSVAPYQLMNLRGTQGGAALSLAL 180

Query: 605 AAYLVYQHVNGAGGVKESFKGGALLASLAVI 697
A YL +QH GG+ ++F G+++A+LA+I
Sbjct: 181 AGYLAFQHFTRVGGLGKAFDQGSIIATLAII 211


>tr|Q84XU9|Q84XU9_WHEAT Cold acclimation protein COR413-TM1
OS=Triticum aestivum PE=2 SV=1
Length = 221

Score = 106 bits (265), Expect = 1e-21
Identities = 55/148 (37%), Positives = 81/148 (54%)
Frame = +2

Query: 254 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 433
S+G +S LS +W+ AAAVL+ K T I+K+ LVPL LQAP V++ ++
Sbjct: 63 SRGSGIVCNASAYLSPPTTQWVSVAAAAVLLLAKGTGIHKSFLVPLFVLQAPTAVISWIK 122

Query: 434 GEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACVAAY 613
EYGLW AFLAL+VRLF ++R T +VS +AAY
Sbjct: 123 SEYGLWTAFLALVVRLFLPFPGELELPLSTMLAVSVAPYQVMNVRGTQGGAIVSLALAAY 182

Query: 614 LVYQHVNGAGGVKESFKGGALLASLAVI 697
L +QH GG+ ++F G+++A++A+I
Sbjct: 183 LAFQHFTRTGGIGKAFDQGSIVATMAII 210


>tr|Q8W0V1|Q8W0V1_HORVD Cold acclimation WCOR413-like protein gamma
form OS=Hordeum vulgare var. distichum PE=2 SV=1
Length = 215

Score = 105 bits (263), Expect = 2e-21
Identities = 55/148 (37%), Positives = 81/148 (54%)
Frame = +2

Query: 254 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 433
S+G ++S LS +W+ AAAVL+ K T I+K+ LVPL LQAP V++ ++
Sbjct: 57 SRGSGIVCSASAYLSPPTTQWVSVAAAAVLLLAKGTGIHKSFLVPLFVLQAPTAVISWIK 116

Query: 434 GEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACVAAY 613
EYGLW AFLAL VRLF ++R T +VS +AAY
Sbjct: 117 SEYGLWTAFLALAVRLFLPFPGELELPLSTMLAVSVAPYQVMNVRGTQGGTIVSLVLAAY 176

Query: 614 LVYQHVNGAGGVKESFKGGALLASLAVI 697
L +QH GG+ ++F G+++A++A+I
Sbjct: 177 LAFQHFTRTGGIGKAFDQGSIVATMAII 204


>tr|A7QQJ9|A7QQJ9_VITVI Chromosome undetermined scaffold_143, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00003392001 PE=4 SV=1
Length = 162

Score = 99.8 bits (247), Expect = 2e-19
Identities = 51/138 (36%), Positives = 79/138 (57%)
Frame = +2

Query: 284 SITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVRGEYGLWAAFL 463
S L+ L+W+ ++AVLM + T+ K+ LVPL ALQAP +++ ++GEYG W AFL
Sbjct: 14 SAPLTPPNLQWVCTVSSAVLMLSRGTAAQKSFLVPLFALQAPTSIISWIKGEYGAWTAFL 73

Query: 464 ALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACVAAYLVYQHVNGAG 643
ALLVRLF+ ++R T +VS +A YL +QH + AG
Sbjct: 74 ALLVRLFFFIPGELELPFVALLLVIVAPYQVMNLRGTQMGAIVSLLIAGYLAFQHFSRAG 133

Query: 644 GVKESFKGGALLASLAVI 697
++ +F G+++A+LA+I
Sbjct: 134 SLQRAFNQGSIVATLAII 151


>tr|A3B6W4|A3B6W4_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_018786 PE=4 SV=1
Length = 247

Score = 94.4 bits (233), Expect = 6e-18
Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 25/176 (14%)
Frame = +2

Query: 245 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 424
++ +GGA SS LS ++W+ AGA AVL+ K T+I+K+ LVPL AL AP V++
Sbjct: 61 ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120

Query: 425 AVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRR----------- 571
++ +YG W A LALLVRLF+ ++R
Sbjct: 121 WIKSDYGQWTALLALLVRLFFSIPGELELPLSTMLLVSVAPYQLMNLRELLRKILLFSKV 180

Query: 572 --------------TTAALVVSACVAAYLVYQHVNGAGGVKESFKGGALLASLAVI 697
T +S +A YL +QH GG+ ++F G+++A+LA+I
Sbjct: 181 LVLMLQFPFPVHRGTQGGAALSLALAGYLAFQHFTRVGGLGKAFDQGSIIATLAII 236