DK948383 |
Clone id |
TST38A01NGRL0003_C19 |
Library |
TST38 |
Length |
684 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_C19. 5' end sequence. |
Accession |
DK948383 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
AATTGTTGAAGAGAAGGTACTCTTCGTCTCAAACCCGGTAGCTGATTGAAGATCCGCTCG AGCTCGAGAGAGGAGATACACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCTTTA CCCTCGGCAGATCTGCATATCGAATTCGTCCTGCTTCTCCGCATTGATGGCGGAGGCAGC AGGATCTTTCGTTACCAGGTCATTTGAGCGCCTGCTCAAAGATTCCTCCGGCAAGAAGAA CGCTAACCTGCAGAAGGCTCTCAAAGCTTATTTGGAAAGATCGAAGAATCTTGAGCAACC CTCTTCGCCTGTATCATCGGTCGAGAACAAGGAGAAGACTGAATCCACCCCAGCTAGCCC AACATCATCAGTAACTGCAACGGACACGGATTCAGTCTCTGTCTCAAGTACGAGTCTCTC AGCAGCCACCACTCTTGCAACAGCAGGGCATACATTGGAAAGTTCTGAAGCAGAGCTTGT GCTGCTGCCATTGCGTATTGCCTTTGAGACAAAGCAACCGAAGCTTGTGGAGTCGGCCTT GGACTGTTTACATAAATTAATATCATATGAACATTTAGAGGGAGATGCTGGAGTAGAAGG GGGTAAGAATAGCTCTATGATTACTGACATGTTCAACATGGTGTGTGCTTCTGCTGACAA CAATGCCCCTGATAGTACTATTCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9Y6D5 |
Definition |
sp|Q9Y6D5|BIG2_HUMAN Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Homo sapiens |
Align length |
61 |
Score (bit) |
52.0 |
E-value |
3.0e-06 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TZ95 |
Definition |
tr|A9TZ95|A9TZ95_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
172 |
Score (bit) |
136.0 |
E-value |
1.0e-30 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948383|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0003_C19, 5' (669 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TZ95|A9TZ95_PHYPA Predicted protein (Fragment) OS=Physcomit... 136 1e-30 tr|Q9LXK4|Q9LXK4_ARATH Guanine nucleotide-exchange-like protein ... 125 2e-27 tr|A7PDN2|A7PDN2_VITVI Chromosome chr11 scaffold_13, whole genom... 120 1e-25 tr|A5C407|A5C407_VITVI Putative uncharacterized protein OS=Vitis... 120 1e-25 tr|A9RNQ7|A9RNQ7_PHYPA Predicted protein OS=Physcomitrella paten... 119 1e-25 tr|Q7XIK7|Q7XIK7_ORYSJ Putative guanine nucleotide-exchange prot... 114 4e-24 tr|A3BL75|A3BL75_ORYSJ Putative uncharacterized protein OS=Oryza... 114 4e-24 tr|A2XXG5|A2XXG5_ORYSI Putative uncharacterized protein OS=Oryza... 114 4e-24 tr|Q7TSU1|Q7TSU1_RAT Brefeldin A-inhibited guanine nucleotide-ex... 52 3e-05 tr|Q86TH5|Q86TH5_HUMAN ARFGEF2 protein (Fragment) OS=Homo sapien... 52 3e-05 tr|Q3U5C3|Q3U5C3_MOUSE Putative uncharacterized protein (Fragmen... 52 4e-05 tr|A2A5R2|A2A5R2_MOUSE ADp-ribosylation factor guanine nucleotid... 52 4e-05 tr|Q9XWG5|Q9XWG5_CAEEL Protein Y6B3A.1a, partially confirmed by ... 52 4e-05 tr|Q7K783|Q7K783_CAEEL Protein Y6B3A.1b, partially confirmed by ... 52 4e-05 tr|B2FDA3|B2FDA3_CAEEL Protein Y6B3A.1c, partially confirmed by ... 52 4e-05 tr|A7S350|A7S350_NEMVE Predicted protein OS=Nematostella vectens... 50 1e-04 tr|A9TMD6|A9TMD6_PHYPA Predicted protein OS=Physcomitrella paten... 50 1e-04 tr|A9RIC5|A9RIC5_PHYPA Predicted protein OS=Physcomitrella paten... 50 2e-04 tr|Q4SFB7|Q4SFB7_TETNG Chromosome 6 SCAF14605, whole genome shot... 49 2e-04 tr|B7PVS0|B7PVS0_IXOSC Brefeldin A-inhibited guanine nucleotide-... 49 3e-04 tr|B6MRZ4|B6MRZ4_BRAFL Putative uncharacterized protein OS=Branc... 49 3e-04 tr|B6MRY5|B6MRY5_BRAFL Putative uncharacterized protein OS=Branc... 49 3e-04 tr|B6MRY4|B6MRY4_BRAFL Putative uncharacterized protein OS=Branc... 49 3e-04 tr|Q9LZX8|Q9LZX8_ARATH Guanine nucleotide exchange factor-like p... 48 5e-04 tr|A8XWC0|A8XWC0_CAEBR CBR-AGEF-1 protein OS=Caenorhabditis brig... 48 5e-04 tr|Q16KG1|Q16KG1_AEDAE Brefeldin a-inhibited guanine nucleotide-... 47 8e-04 tr|B0WCK7|B0WCK7_CULQU Brefeldin A-inhibited guanine nucleotide-... 47 8e-04 tr|Q6DEJ1|Q6DEJ1_DANRE Im:7138204 protein (Fragment) OS=Danio re... 47 0.001 tr|Q9LPC5|Q9LPC5_ARATH F22M8.9 protein OS=Arabidopsis thaliana G... 47 0.001 tr|Q7PWN5|Q7PWN5_ANOGA AGAP008906-PA (Fragment) OS=Anopheles gam... 46 0.002
>tr|A9TZ95|A9TZ95_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_30044 PE=4 SV=1 Length = 1116
Score = 136 bits (343), Expect = 1e-30 Identities = 78/172 (45%), Positives = 98/172 (56%) Frame = +2
Query: 152 MAEAAGSFVTRSFERLLKDSSGXXXXXXXXXXXXYLERSKNLEQPSSPVSSVENKEKTEX 331 MAEA G+FVTR+FER+LKDS+G YL+ + E S +S + Sbjct: 1 MAEAGGAFVTRAFERMLKDSTGRKFGSLQTALKAYLD--EKFEDTSPAISPAKPST---- 54
Query: 332 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHTLESSEAELVLLPLRIAFETKQPKL 511 GH LE SEA+LV+LPLR+AFETKQ KL Sbjct: 55 ----------------------GQAAAAALAEAGHILEGSEADLVILPLRLAFETKQSKL 92
Query: 512 VESALDCLHKLISYEHLEGDAGVEGGKNSSMITDMFNMVCASADNNAPDSTI 667 VE ALDCLHKLISY HL G+AGV+GG+N+ + T++ NMVCASAD +APDS + Sbjct: 93 VEPALDCLHKLISYGHLVGEAGVDGGRNAQLATEILNMVCASADTSAPDSLV 144
>tr|Q9LXK4|Q9LXK4_ARATH Guanine nucleotide-exchange-like protein OS=Arabidopsis thaliana GN=F7K15_150 PE=4 SV=1 Length = 1669
Score = 125 bits (314), Expect = 2e-27 Identities = 74/174 (42%), Positives = 98/174 (56%), Gaps = 5/174 (2%) Frame = +2
Query: 161 AAGSFVTRSFERLLKDSSGXXXXXXXXXXXXYLERSKNLEQ--PSSPVSSVENK---EKT 325 AAG F+TR+F+ +LK+S G Y + SK + Q PSS V S + + EKT Sbjct: 2 AAGGFLTRAFDTMLKESGGKKFPDLQKAIQAYQDGSKVVTQAAPSSIVESSQAEGGGEKT 61
Query: 326 EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHTLESSEAELVLLPLRIAFETKQP 505 GHTL +E ELVL PLR+AFETK Sbjct: 62 -GVEADEPQKVTSAEVAQQASQSKSETINVSLANAGHTLGGAEVELVLKPLRLAFETKNL 120
Query: 506 KLVESALDCLHKLISYEHLEGDAGVEGGKNSSMITDMFNMVCASADNNAPDSTI 667 K+ ++ALDCLHKLI+Y+HLEGD G++GGKNS+ TD+ NMVC+ DN++PDST+ Sbjct: 121 KIFDAALDCLHKLIAYDHLEGDPGLDGGKNSAPFTDILNMVCSCVDNSSPDSTV 174
>tr|A7PDN2|A7PDN2_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016348001 PE=4 SV=1 Length = 1757
Score = 120 bits (300), Expect = 1e-25 Identities = 70/184 (38%), Positives = 93/184 (50%), Gaps = 15/184 (8%) Frame = +2
Query: 161 AAGSFVTRSFERLLKDSSGXXXXXXXXXXXXYLERSKNLEQPS---------------SP 295 AAG F++R+FE +LK+ SG YL+ +K ++Q S S Sbjct: 5 AAGGFISRAFESMLKECSGKKYPALHKSIQTYLDSTKEVDQHSAFSETNQAASLTAYGSS 64
Query: 296 VSSVENKEKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHTLESSEAELVLLP 475 + K E GHTLE +E ELVL P Sbjct: 65 SETDAGIAKNEIEANHSRAHTGEGVERVGRPVGTSGTITAALAHAGHTLEGAEVELVLNP 124
Query: 476 LRIAFETKQPKLVESALDCLHKLISYEHLEGDAGVEGGKNSSMITDMFNMVCASADNNAP 655 LR+A ETK K++E ALDCLHKLI+YEHLEGD G++GG N+ + TD+ NMVC+ DN++ Sbjct: 125 LRLAIETKNLKVLEPALDCLHKLIAYEHLEGDPGLDGGTNAPLFTDILNMVCSCVDNSSS 184
Query: 656 DSTI 667 DSTI Sbjct: 185 DSTI 188
>tr|A5C407|A5C407_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012924 PE=4 SV=1 Length = 1930
Score = 120 bits (300), Expect = 1e-25 Identities = 70/184 (38%), Positives = 93/184 (50%), Gaps = 15/184 (8%) Frame = +2
Query: 161 AAGSFVTRSFERLLKDSSGXXXXXXXXXXXXYLERSKNLEQPS---------------SP 295 AAG F++R+FE +LK+ SG YL+ +K ++Q S S Sbjct: 5 AAGGFISRAFESMLKECSGKKYPALHKSIQTYLDSTKEVDQHSAFSETNQAASLTAYGSS 64
Query: 296 VSSVENKEKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHTLESSEAELVLLP 475 + K E GHTLE +E ELVL P Sbjct: 65 SETDAGIAKNEIEANHSRAHTGEGVERVGRPVGTSGTITAALAHAGHTLEGAEVELVLNP 124
Query: 476 LRIAFETKQPKLVESALDCLHKLISYEHLEGDAGVEGGKNSSMITDMFNMVCASADNNAP 655 LR+A ETK K++E ALDCLHKLI+YEHLEGD G++GG N+ + TD+ NMVC+ DN++ Sbjct: 125 LRLAIETKNLKVLEPALDCLHKLIAYEHLEGDPGLDGGTNAPLFTDILNMVCSCVDNSSS 184
Query: 656 DSTI 667 DSTI Sbjct: 185 DSTI 188
>tr|A9RNQ7|A9RNQ7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_117145 PE=4 SV=1 Length = 1778
Score = 119 bits (299), Expect = 1e-25 Identities = 72/177 (40%), Positives = 93/177 (52%), Gaps = 5/177 (2%) Frame = +2
Query: 152 MAEAAGSFVTRSFERLLKDSSGXXXXXXXXXXXXYLERSKNLEQPSSPVSSVENKEK--- 322 MAEA G+FVTR+FE +LKD + YLE + + +P++ S V Sbjct: 1 MAEAGGAFVTRAFECMLKDPAARRFPSLQTALKAYLEVYQEI-RPNAATSIVSFSTAKFQ 59
Query: 323 --TEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHTLESSEAELVLLPLRIAFET 496 GH LE SEA+LV+ PLR+A ET Sbjct: 60 CDASSPEEGDQQSTQTSLVVSPSKSSTGLAAAAALSEAGHMLEGSEADLVISPLRLACET 119
Query: 497 KQPKLVESALDCLHKLISYEHLEGDAGVEGGKNSSMITDMFNMVCASADNNAPDSTI 667 KQ KL+E ALDCLHKLISY HL G+AGV+GG+N+ + T++ NMVCAS D APDS + Sbjct: 120 KQSKLMEPALDCLHKLISYGHLVGEAGVDGGRNTQLATEILNMVCASDDTTAPDSLV 176
>tr|Q7XIK7|Q7XIK7_ORYSJ Putative guanine nucleotide-exchange protein GEP2 OS=Oryza sativa subsp. japonica GN=OJ1773_H01.101 PE=4 SV=1 Length = 1256
Score = 114 bits (286), Expect = 4e-24 Identities = 53/79 (67%), Positives = 63/79 (79%) Frame = +2
Query: 431 GHTLESSEAELVLLPLRIAFETKQPKLVESALDCLHKLISYEHLEGDAGVEGGKNSSMIT 610 G LE ++AELVL PLR+AFETK KLVE ALDCLHKLI+Y+HLEGD G+EGGKNS + T Sbjct: 68 GRVLEGTQAELVLQPLRLAFETKHVKLVEPALDCLHKLIAYDHLEGDPGLEGGKNSPLFT 127
Query: 611 DMFNMVCASADNNAPDSTI 667 D+ NMVC DN + DST+ Sbjct: 128 DILNMVCGCVDNTSSDSTV 146
>tr|A3BL75|A3BL75_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_023797 PE=4 SV=1 Length = 1663
Score = 114 bits (286), Expect = 4e-24 Identities = 53/79 (67%), Positives = 63/79 (79%) Frame = +2
Query: 431 GHTLESSEAELVLLPLRIAFETKQPKLVESALDCLHKLISYEHLEGDAGVEGGKNSSMIT 610 G LE ++AELVL PLR+AFETK KLVE ALDCLHKLI+Y+HLEGD G+EGGKNS + T Sbjct: 101 GRVLEGTQAELVLQPLRLAFETKHVKLVEPALDCLHKLIAYDHLEGDPGLEGGKNSPLFT 160
Query: 611 DMFNMVCASADNNAPDSTI 667 D+ NMVC DN + DST+ Sbjct: 161 DILNMVCGCVDNTSSDSTV 179
>tr|A2XXG5|A2XXG5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_17371 PE=4 SV=1 Length = 1680
Score = 114 bits (286), Expect = 4e-24 Identities = 53/79 (67%), Positives = 63/79 (79%) Frame = +2
Query: 431 GHTLESSEAELVLLPLRIAFETKQPKLVESALDCLHKLISYEHLEGDAGVEGGKNSSMIT 610 G LE ++AELVL PLR+AFETK KLVE ALDCLHKLI+Y+HLEGD G+EGGKNS + T Sbjct: 68 GRVLEGTQAELVLQPLRLAFETKHVKLVEPALDCLHKLIAYDHLEGDPGLEGGKNSPLFT 127
Query: 611 DMFNMVCASADNNAPDSTI 667 D+ NMVC DN + DST+ Sbjct: 128 DILNMVCGCVDNTSSDSTV 146
>tr|Q7TSU1|Q7TSU1_RAT Brefeldin A-inhibited guanine nucleotide-exchange factor 2 OS=Rattus norvegicus GN=Arfgef2 PE=2 SV=1 Length = 1791
Score = 52.0 bits (123), Expect = 3e-05 Identities = 23/60 (38%), Positives = 36/60 (60%) Frame = +2
Query: 452 EAELVLLPLRIAFETKQPKLVESALDCLHKLISYEHLEGDAGVEGGKNSSMITDMFNMVC 631 EA+ LP +A ++K P++V ++LDCL KLI+Y H+ G+A G +I + VC Sbjct: 64 EADKYFLPFELACQSKSPRVVSTSLDCLQKLIAYGHITGNAPDSGAPGKRLIDRIVETVC 123
>tr|Q86TH5|Q86TH5_HUMAN ARFGEF2 protein (Fragment) OS=Homo sapiens GN=ARFGEF2 PE=2 SV=1 Length = 832
Score = 52.0 bits (123), Expect = 3e-05 Identities = 22/61 (36%), Positives = 37/61 (60%) Frame = +2
Query: 452 EAELVLLPLRIAFETKQPKLVESALDCLHKLISYEHLEGDAGVEGGKNSSMITDMFNMVC 631 EA+ LP +A ++K P++V ++LDCL KLI+Y H+ G+A G +I + +C Sbjct: 64 EADKYFLPFELACQSKSPRVVSTSLDCLQKLIAYGHITGNAPDSGAPGKRLIDRIVETIC 123
Query: 632 A 634 + Sbjct: 124 S 124
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