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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948274
Clone id TST38A01NGRL0002_O05
Library
Length 655
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_O05. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CATTGTGCTTTTCTTGAGCTGCCGCTTGTTGGAAGGTGAAGCTCAGCTCTAGTATTCTTC
TTGCACTTGGCTTTAGCAGAAACTTCTGCTGATTTATGGGTTTAGCAGCAATCTCTGCTA
ATTTAGGGACATGTCAGCTGTCTTTGTTCAATATTTAGCTGCCCATTTGCGTTTTAGGTC
ATCTGCAGCTGCCCATTTGTGCATTAAGTAAGATTGAGCTGCCTATTTTGTGTATTAAGT
ACTTTGATTAGCTCAACATAGACATACAGGAAGTCCTTCTACCCTTTTTCTGGCTATGGC
TTCCTTGGGCAAGATCATCCACGACGACAGACACCCCATTTGGCTCATCGATGCCATCAT
TCTGTCTGCTGCCGTATACGGCAAGGACCCTCAAGAGGAGTTGGACGCCATGGACAAAGA
TTATGGCCTCCCTGCAACAGCAAAGTATGAATTTCTCTCCGAAGAGGAACTCCAAGCGGC
TGGTTTTGCAGATTGCAAGCAAACCCTTATTGTGGTCAGGAGTCTTACAGGAGGCCATTA
CATAGTGGCTTGTAGAGGGACAATGGATGTGAGCGATGCTCTTGTGGACCTCAACATAGT
GCATAGGACCGTGAGCTTAGGAGAAGGTGCGGCACATGCAGGATTTCTCGACCGT
■■Homology search results ■■ -
sp_hit_id Q6P6S3
Definition sp|Q6P6S3|BSPRY_RAT B box and SPRY domain-containing protein OS=Rattus norvegicus
Align length 43
Score (bit) 32.3
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948274|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_O05, 5'
         (655 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6P6S3|BSPRY_RAT B box and SPRY domain-containing protein OS=...    32   2.2  
sp|Q83IY4|GLMS_SHIFL Glucosamine--fructose-6-phosphate aminotran...    32   3.8  
sp|P17169|GLMS_ECOLI Glucosamine--fructose-6-phosphate aminotran...    32   3.8  
sp|Q8FBT4|GLMS_ECOL6 Glucosamine--fructose-6-phosphate aminotran...    32   3.8  
sp|Q8XEG2|GLMS_ECO57 Glucosamine--fructose-6-phosphate aminotran...    32   3.8  
sp|Q4P5R8|STU1_USTMA Protein STU1 OS=Ustilago maydis GN=STU1 PE=...    31   5.0  
sp|Q8ZKX1|GLMS_SALTY Glucosamine--fructose-6-phosphate aminotran...    31   5.0  
sp|Q8Z2Q2|GLMS_SALTI Glucosamine--fructose-6-phosphate aminotran...    31   5.0  
sp|Q5PKV9|GLMS_SALPA Glucosamine--fructose-6-phosphate aminotran...    31   5.0  
sp|Q73XM7|TIG_MYCPA Trigger factor OS=Mycobacterium paratubercul...    30   8.5  
sp|A0QDF1|TIG_MYCA1 Trigger factor OS=Mycobacterium avium (strai...    30   8.5  

>sp|Q6P6S3|BSPRY_RAT B box and SPRY domain-containing protein
           OS=Rattus norvegicus GN=Bspry PE=1 SV=2
          Length = 448

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 385 GPSRGVGRHGQRLWPPCNSKV*ISLRRGTPSGWFCRLQANPYC 513
           GP  G+GR   + + PC     +    G P  WFC  +  P C
Sbjct: 49  GPGPGLGREPGQRYQPCQ----LCPEHGKPLSWFCLSERRPVC 87


>sp|Q83IY4|GLMS_SHIFL Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] OS=Shigella flexneri
           GN=glmS PE=3 SV=3
          Length = 609

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 308 GKIIHDDRHPIWLIDAIILSAAVYGKDPQEELDAMDKDYGLPATAKYEFLSEEEL 472
           G +I D RHP  L+ A   S  V G    E   A D+   LP T ++ FL E ++
Sbjct: 158 GTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDI 212


>sp|P17169|GLMS_ECOLI Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] OS=Escherichia coli
           (strain K12) GN=glmS PE=1 SV=4
          Length = 609

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 308 GKIIHDDRHPIWLIDAIILSAAVYGKDPQEELDAMDKDYGLPATAKYEFLSEEEL 472
           G +I D RHP  L+ A   S  V G    E   A D+   LP T ++ FL E ++
Sbjct: 158 GTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDI 212


>sp|Q8FBT4|GLMS_ECOL6 Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] OS=Escherichia coli O6
           GN=glmS PE=3 SV=3
          Length = 609

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 308 GKIIHDDRHPIWLIDAIILSAAVYGKDPQEELDAMDKDYGLPATAKYEFLSEEEL 472
           G +I D RHP  L+ A   S  V G    E   A D+   LP T ++ FL E ++
Sbjct: 158 GTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDI 212


>sp|Q8XEG2|GLMS_ECO57 Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] OS=Escherichia coli
           O157:H7 GN=glmS PE=3 SV=3
          Length = 609

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 308 GKIIHDDRHPIWLIDAIILSAAVYGKDPQEELDAMDKDYGLPATAKYEFLSEEEL 472
           G +I D RHP  L+ A   S  V G    E   A D+   LP T ++ FL E ++
Sbjct: 158 GTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDI 212


>sp|Q4P5R8|STU1_USTMA Protein STU1 OS=Ustilago maydis GN=STU1 PE=3
            SV=1
          Length = 1210

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 655  TVEKSCMCRTFS*AHGPMHYVEV-HKSIAHIHCPSTSHYVMAS 530
            +V +S + R  S  H P       H S  HIH P+TSH V++S
Sbjct: 919  SVRRSGLPRPVSTMHSPSPSASASHISAGHIHAPTTSHRVLSS 961


>sp|Q8ZKX1|GLMS_SALTY Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] OS=Salmonella typhimurium
           GN=glmS PE=3 SV=3
          Length = 609

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 308 GKIIHDDRHPIWLIDAIILSAAVYGKDPQEELDAMDKDYGLPATAKYEFLSEEEL 472
           G +I D RHP  L+ A   S  V G    E   A D+   LP T ++ FL E ++
Sbjct: 158 GTVIMDTRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDI 212


>sp|Q8Z2Q2|GLMS_SALTI Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] OS=Salmonella typhi
           GN=glmS PE=3 SV=3
          Length = 609

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 308 GKIIHDDRHPIWLIDAIILSAAVYGKDPQEELDAMDKDYGLPATAKYEFLSEEEL 472
           G +I D RHP  L+ A   S  V G    E   A D+   LP T ++ FL E ++
Sbjct: 158 GTVIMDTRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDI 212


>sp|Q5PKV9|GLMS_SALPA Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] OS=Salmonella paratyphi A
           GN=glmS PE=3 SV=3
          Length = 609

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 308 GKIIHDDRHPIWLIDAIILSAAVYGKDPQEELDAMDKDYGLPATAKYEFLSEEEL 472
           G +I D RHP  L+ A   S  V G    E   A D+   LP T ++ FL E ++
Sbjct: 158 GTVIMDTRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDI 212


>sp|Q73XM7|TIG_MYCPA Trigger factor OS=Mycobacterium
           paratuberculosis GN=tig PE=3 SV=1
          Length = 464

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +2

Query: 344 LIDAII--LSAAVYGKDPQEELDAMDKDYGLPATAKYEFLSEEELQAAGFADCKQTLIVV 517
           L+DA+   L   V  +D  E L A  + YG+       +L E     A FAD ++ L + 
Sbjct: 356 LLDALADKLQVQVGQEDLTERLVATSRQYGIEPQQLLAYLQENNQLPAMFADVRRALAIA 415

Query: 518 RSLTGGHYIVACRGTMDVSD 577
             +           T+D S+
Sbjct: 416 EVIRAATVTDTAGNTIDTSE 435
tr_hit_id A9RVJ1
Definition tr|A9RVJ1|A9RVJ1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 120
Score (bit) 172.0
E-value 2.0e-41
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948274|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_O05, 5'
         (655 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RVJ1|A9RVJ1_PHYPA Predicted protein OS=Physcomitrella paten...   172   2e-41
tr|A9S213|A9S213_PHYPA Predicted protein OS=Physcomitrella paten...   166   2e-39
tr|B5JF10|B5JF10_9BACT Lipase family OS=Verrucomicrobiae bacteri...    36   1.8  
tr|B6LB31|B6LB31_BRAFL Putative uncharacterized protein OS=Branc...    35   5.3  
tr|Q73XW3|Q73XW3_MYCPA Putative uncharacterized protein OS=Mycob...    34   6.9  
tr|B6QVD9|B6QVD9_PENMA Hydrolase, alpha/beta fold family protein...    34   9.0  

>tr|A9RVJ1|A9RVJ1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_161303 PE=4 SV=1
          Length = 517

 Score =  172 bits (435), Expect = 2e-41
 Identities = 82/120 (68%), Positives = 97/120 (80%)
 Frame = +2

Query: 296 MASLGKIIHDDRHPIWLIDAIILSAAVYGKDPQEELDAMDKDYGLPATAKYEFLSEEELQ 475
           M SLGKII DDRHP WL+D+IILSA VY  +P EEL  M+ +YGLP TA+YEF+S+EEL 
Sbjct: 1   MTSLGKIIKDDRHPTWLVDSIILSAVVYSPNPAEELKLMEAEYGLPPTAEYEFISDEELC 60

Query: 476 AAGFADCKQTLIVVRSLTGGHYIVACRGTMDVSDALVDLNIVHRTVSLGEGAAHAGFLDR 655
             GF +CKQTL+VVRSL  GHY+VACRGT DVSDAL DLN + RT++L  GAAH+GFLDR
Sbjct: 61  ENGFENCKQTLLVVRSLADGHYVVACRGTTDVSDALADLNFLQRTLTLIPGAAHSGFLDR 120


>tr|A9S213|A9S213_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_162364 PE=4 SV=1
          Length = 550

 Score =  166 bits (419), Expect = 2e-39
 Identities = 79/120 (65%), Positives = 94/120 (78%)
 Frame = +2

Query: 296 MASLGKIIHDDRHPIWLIDAIILSAAVYGKDPQEELDAMDKDYGLPATAKYEFLSEEELQ 475
           MASLGKII DDRHP WL+D+IILSA VY   P +EL  M+++YGLP+TA YEF+ +E L+
Sbjct: 1   MASLGKIIKDDRHPTWLVDSIILSAVVYSPKPADELKLMEREYGLPSTANYEFIPDEVLR 60

Query: 476 AAGFADCKQTLIVVRSLTGGHYIVACRGTMDVSDALVDLNIVHRTVSLGEGAAHAGFLDR 655
             GF  CKQ L+VVRSL   HY+VACRGT DVSDALVDLN + RT++L  GAAH GFLDR
Sbjct: 61  ENGFGHCKQPLLVVRSLADNHYVVACRGTNDVSDALVDLNFMQRTMTLLPGAAHGGFLDR 120


>tr|B5JF10|B5JF10_9BACT Lipase family OS=Verrucomicrobiae bacterium
           DG1235 GN=VDG1235_4260 PE=4 SV=1
          Length = 338

 Score = 36.2 bits (82), Expect = 1.8
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +2

Query: 461 EEELQAAGFADCK--QTLIVVRSLTGG--HYIVACRGTM--DVSDALVDLNIVHRTVSLG 622
           EE+L +AGF D +   TL     L     H ++  RGT   D +D   D   +HR  +  
Sbjct: 102 EEKLTSAGFTDIQFFDTLGTYAFLAESPEHIVITFRGTETGDQTDYFTDAKFLHRDFT-E 160

Query: 623 EGAAHAGFLD 652
            G AHAGFLD
Sbjct: 161 NGRAHAGFLD 170


>tr|B6LB31|B6LB31_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_118753 PE=4 SV=1
          Length = 1311

 Score = 34.7 bits (78), Expect = 5.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 319  PRRQTPHLAHRCHHSVCCRIRQGPSRGVGRHGQRLW 426
            P+ Q  HL    HH    R+ QGP  G  +HG   W
Sbjct: 1004 PQEQPKHLGPSQHHGPHARVMQGPDHGPQQHGHHEW 1039


>tr|Q73XW3|Q73XW3_MYCPA Putative uncharacterized protein
           OS=Mycobacterium paratuberculosis GN=MAP_2195 PE=4 SV=1
          Length = 448

 Score = 34.3 bits (77), Expect = 6.9
 Identities = 24/69 (34%), Positives = 33/69 (47%)
 Frame = -2

Query: 633 AAPSPKLTVLCTMLRSTRASLTSIVPLQATM*WPPVRLLTTIRVCLQSAKPAAWSSSSER 454
           A P P  T +       R   T  VP ++   WPPV + T  R+C +  +PA WSS+S  
Sbjct: 385 ATPPPSATAVGWR----RCRRTMSVPSRS---WPPVSIRTG-RICTRPTRPATWSSTSGG 436

Query: 453 NSYFAVAGR 427
            +    AGR
Sbjct: 437 RTPKRSAGR 445


>tr|B6QVD9|B6QVD9_PENMA Hydrolase, alpha/beta fold family protein
           OS=Penicillium marneffei ATCC 18224 GN=PMAA_012150 PE=4
           SV=1
          Length = 465

 Score = 33.9 bits (76), Expect = 9.0
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +2

Query: 353 AIILSAAVYGKDPQEELDAMDKDYGLPA--TAKYEFLSEEELQAAGFADCKQTLIVVRSL 526
           A+      Y K    E     + Y LP+   A+  F S+EEL A    D K  L+ +  L
Sbjct: 99  AVDFVVPAYPKTTDPEATDEARKYTLPSGLPARTTFFSKEELAALPSNDTKPMLVALHGL 158

Query: 527 TGGHYIVACRGTM 565
           TGG + V  R  +
Sbjct: 159 TGGSHEVYLRAAL 171