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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948229
Clone id TST38A01NGRL0002_M07
Library
Length 523
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_M07. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GCGGGTTGCGGTGTGATTGAGGTGCAAATTTCCACATCAGAGGAGTACCATATAAAGGTG
GGAGGTGAAGGGGACATGCATTGAGCAGCAGGAGCAGGCAGGCATACATGTAAGGAATGT
ATTGTGTGTATGGTAAAGAGCAATACATGCATACATGTAGGGGTCATGTATAGGGAGGAG
AAGCAAATGCCCACTTGACGCTGTATTTTTTGTTGTGTTCAAGCCTTGGGGATGAGCCTG
GCGGCTGCTGTGTAAGCGTTTTCGATGCTAATCTCACATGCAAGGGAAGTCTATAGCAGC
AGCTGCAGAGGGGAAGAGCAGGCTAGCAATGGAGAAAATGCTTCTTGTAGCAGCTGCTAC
TTAGGATTTTCTGTTTTTTTTTTTGGGGGGGGGGGAGATGATTTTGTGTAATTGTGCTTG
TGATGTATAAAACTGATTCGATTCTTTTCAATGACAAATTGTATGCAAATGGACATTGAA
ATTTGGAATAAATGGAGACATGCATTGCCNCAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P15974
Definition sp|P15974|PHXR4_MOUSE Putative per-hexamer repeat protein 4 OS=Mus musculus
Align length 61
Score (bit) 31.2
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948229|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_M07, 5'
         (511 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P15974|PHXR4_MOUSE Putative per-hexamer repeat protein 4 OS=M...    31   2.9  
sp|Q8NGT2|O13J1_HUMAN Olfactory receptor 13J1 OS=Homo sapiens GN...    31   3.8  

>sp|P15974|PHXR4_MOUSE Putative per-hexamer repeat protein 4 OS=Mus
           musculus GN=Phxr4 PE=2 SV=1
          Length = 95

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 14/61 (22%), Positives = 26/61 (42%)
 Frame = -3

Query: 191 GICFSSLYMTPTCMHVLLFTIHTIHSLHVCLPAPAAQCMSPSPPTFIWYSSDVEICTSIT 12
           G+C    +    C+HVL   +H     H+   A   +C+ P   + + + +   I T + 
Sbjct: 8   GVCLCVCFSVCMCVHVLCVYVHVCTYAHIWTTALHLRCLLPKSFSTLLFKAGFGIDTCVI 67

Query: 11  P 9
           P
Sbjct: 68  P 68


>sp|Q8NGT2|O13J1_HUMAN Olfactory receptor 13J1 OS=Homo sapiens
           GN=OR13J1 PE=2 SV=1
          Length = 312

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -2

Query: 195 SGHLLLLPIHDPYMYACIALYHTHNTFLTCMPACSCCSMHVPFTSHLYMVLL*CGNL 25
           +G +LLLP+  P  + C++      T L    A  CC       +HL +VLL  G +
Sbjct: 201 AGSILLLPV--PLAFICLSYLLILATILRVPSAARCCKAFSTCLAHLAVVLLFYGTI 255
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948229|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_M07, 5'
         (511 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******