DK948177 |
Clone id |
TST38A01NGRL0002_K01 |
Library |
TST38 |
Length |
619 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_K01. 5' end sequence. |
Accession |
DK948177 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL759Contig1 |
Sequence |
AATGAAAGAGGGTGTGCCTCACTTCAAGCCAGTGCATTTGTTTGATGAAGGTTCCACCGT TTCTTGGGTGCCTTGTGGCCGGAAACTCACATGCTCCTACCCTGGCATCAAGTTCTTCTA TGGTCCTGATACATACTACAACAATGAAGTGACTGTCTTGGAGATGGATGGGCAATTTGA CAAGCTAAAGGAGCTTATTTATGTTGAGAGCCATTTGAGCAACATTTCTAGCAAATTCTA TGGAGAGATCACACAACAAATGCTAAAGCACACCAACTATCCAGGTAGTAACAATGGCAC TGGCTTCTTCCAAACCATAGACTGATTGAACATCCGAGAGGTGTATGAGGGCATTATTGC CAAGGAAGGTGCAAGCCTACCAACTGTGAAGGCCTAAATCTATTCCTTTTTGCACGCCCT TGTACTGCATTTCTCTCCATAATATAGAGAGGCACCGTCCTATACAGAATCCTTCCCTTC TCATTTTTATCTGTCTTCCTCTGTTTTCCCAAGCATGTACTAGTTCATATACTGTCTGTC CAATGGACTTACGTCCTGACTAGATTTCTTGTACAATAGTTTCTTCAAGAAATGACTTCC TTCTTTGAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P27774 |
Definition |
sp|P27774|KPPR_MESCR Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum |
Align length |
124 |
Score (bit) |
207.0 |
E-value |
3.0e-53 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948177|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0002_K01, 5' (607 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P27774|KPPR_MESCR Phosphoribulokinase, chloroplastic OS=Mesem... 207 3e-53 sp|P09559|KPPR_SPIOL Phosphoribulokinase, chloroplastic OS=Spina... 206 6e-53 sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triti... 205 2e-52 sp|P25697|KPPR_ARATH Phosphoribulokinase, chloroplastic OS=Arabi... 204 4e-52 sp|P19824|KPPR_CHLRE Phosphoribulokinase, chloroplastic OS=Chlam... 201 2e-51 sp|P37101|KPPR_SYNY3 Phosphoribulokinase OS=Synechocystis sp. (s... 166 7e-41 sp|P85112|KPPR_VITSX Phosphoribulokinase, chloroplastic (Fragmen... 33 0.87 sp|P81664|KPPR_PINPS Phosphoribulokinase (Fragments) OS=Pinus pi... 31 5.6 sp|P51887|FMOD_CHICK Fibromodulin OS=Gallus gallus GN=FMOD PE=2 ... 31 5.6 sp|P36023|YK44_YEAST Uncharacterized transcriptional regulatory ... 30 7.4 sp|Q9UF33|EPHA6_HUMAN Ephrin type-A receptor 6 OS=Homo sapiens G... 30 9.6 sp|P73163|DLHH_SYNY3 Putative carboxymethylenebutenolidase OS=Sy... 30 9.6
>sp|P27774|KPPR_MESCR Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1 Length = 397
Score = 207 bits (527), Expect = 3e-53 Identities = 93/124 (75%), Positives = 112/124 (90%) Frame = +2
Query: 5 KEGVPHFKPVHLFDEGSTVSWVPCGRKLTCSYPGIKFFYGPDTYYNNEVTVLEMDGQFDK 184 KEGV +F PV+LFDEGS+++W+PCGRKLTCSYPGIKFFYGPDTY+ NEVTVLEMDGQFD+ Sbjct: 267 KEGVQYFSPVYLFDEGSSITWIPCGRKLTCSYPGIKFFYGPDTYFGNEVTVLEMDGQFDR 326
Query: 185 LKELIYVESHLSNISSKFYGEITQQMLKHTNYPGSNNGTGFFQTID*LNIREVYEGIIAK 364 L ELIYVESHLSN+S+KFYGE+TQQMLKH ++PGSNNGTG FQTI L IR+++E +IA Sbjct: 327 LDELIYVESHLSNLSTKFYGEVTQQMLKHQDFPGSNNGTGLFQTIVGLKIRDLFEQLIAS 386
Query: 365 EGAS 376 + A+ Sbjct: 387 KTAA 390
>sp|P09559|KPPR_SPIOL Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1 Length = 402
Score = 206 bits (525), Expect = 6e-53 Identities = 93/127 (73%), Positives = 109/127 (85%) Frame = +2
Query: 5 KEGVPHFKPVHLFDEGSTVSWVPCGRKLTCSYPGIKFFYGPDTYYNNEVTVLEMDGQFDK 184 KEGV F PV+LFDEGST+SW+PCGRKLTCSYPGIKF YGPDT+Y NEVTV+EMDG FD+ Sbjct: 272 KEGVKFFNPVYLFDEGSTISWIPCGRKLTCSYPGIKFSYGPDTFYGNEVTVVEMDGMFDR 331
Query: 185 LKELIYVESHLSNISSKFYGEITQQMLKHTNYPGSNNGTGFFQTID*LNIREVYEGIIAK 364 L ELIYVESHLSN+S+KFYGE+TQQMLKH N+PGSNNGTGFFQTI L IR+++E ++A Sbjct: 332 LDELIYVESHLSNLSTKFYGEVTQQMLKHQNFPGSNNGTGFFQTIIGLKIRDLFEQLVAS 391
Query: 365 EGASLPT 385 + T Sbjct: 392 RSTATAT 398
>sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1 Length = 404
Score = 205 bits (521), Expect = 2e-52 Identities = 96/131 (73%), Positives = 112/131 (85%) Frame = +2
Query: 2 MKEGVPHFKPVHLFDEGSTVSWVPCGRKLTCSYPGIKFFYGPDTYYNNEVTVLEMDGQFD 181 MKEG+ F PV+LFDEGST++W+PCGRKLTCSYPGIKF YGPDTY+ EV+VLEMDGQFD Sbjct: 273 MKEGIKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFD 332
Query: 182 KLKELIYVESHLSNISSKFYGEITQQMLKHTNYPGSNNGTGFFQTID*LNIREVYEGIIA 361 +L ELIYVESHLSN+S+KFYGE+TQQMLKH ++PGSNNGTG FQTI L IR++YE IIA Sbjct: 333 RLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIA 392
Query: 362 KEGASLPTVKA 394 E A +P A Sbjct: 393 -ERAGVPAEAA 402
>sp|P25697|KPPR_ARATH Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1 Length = 395
Score = 204 bits (518), Expect = 4e-52 Identities = 93/131 (70%), Positives = 113/131 (86%) Frame = +2
Query: 2 MKEGVPHFKPVHLFDEGSTVSWVPCGRKLTCSYPGIKFFYGPDTYYNNEVTVLEMDGQFD 181 MKEGV +F PV+LFDEGST+SW+PCGRKLTCSYPGIKF Y PD+Y+++EV+VLEMDGQFD Sbjct: 265 MKEGVKYFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFNYEPDSYFDHEVSVLEMDGQFD 324
Query: 182 KLKELIYVESHLSNISSKFYGEITQQMLKHTNYPGSNNGTGFFQTID*LNIREVYEGIIA 361 +L ELIYVESHLSN+S+KFYGE+TQQMLKH ++PGSNNGTG FQTI L IR++YE +IA Sbjct: 325 RLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQLIA 384
Query: 362 KEGASLPTVKA 394 + + KA Sbjct: 385 NKATARAEAKA 395
>sp|P19824|KPPR_CHLRE Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1 Length = 375
Score = 201 bits (512), Expect = 2e-51 Identities = 93/122 (76%), Positives = 107/122 (87%) Frame = +2
Query: 2 MKEGVPHFKPVHLFDEGSTVSWVPCGRKLTCSYPGIKFFYGPDTYYNNEVTVLEMDGQFD 181 MKEG F PV+LFDEGST+SW+PCGRKLTCS+PGIK FYGPDT+Y EV+VLEMDGQFD Sbjct: 250 MKEGSKMFDPVYLFDEGSTISWIPCGRKLTCSFPGIKMFYGPDTWYGQEVSVLEMDGQFD 309
Query: 182 KLKELIYVESHLSNISSKFYGEITQQMLKHTNYPGSNNGTGFFQTID*LNIREVYEGIIA 361 KL+ELIYVESHLSN S+KFYGEITQQMLK++ +PGSNNGTG FQTI L +REVYE I+ Sbjct: 310 KLEELIYVESHLSNTSAKFYGEITQQMLKNSGFPGSNNGTGLFQTIVGLKVREVYERIVK 369
Query: 362 KE 367 K+ Sbjct: 370 KD 371
>sp|P37101|KPPR_SYNY3 Phosphoribulokinase OS=Synechocystis sp. (strain PCC 6803) GN=prk PE=2 SV=1 Length = 332
Score = 166 bits (421), Expect = 7e-41 Identities = 70/120 (58%), Positives = 98/120 (81%) Frame = +2
Query: 5 KEGVPHFKPVHLFDEGSTVSWVPCGRKLTCSYPGIKFFYGPDTYYNNEVTVLEMDGQFDK 184 KEGV F+P +LFDEGST+ W PCGRKLTC+YPGIK +YGPD + NEV++LE+DG+F+ Sbjct: 206 KEGVKFFEPAYLFDEGSTIDWRPCGRKLTCTYPGIKMYYGPDNFMGNEVSLLEVDGRFEN 265
Query: 185 LKELIYVESHLSNISSKFYGEITQQMLKHTNYPGSNNGTGFFQTID*LNIREVYEGIIAK 364 L+E++YVE+HLS +K+YGE+T+ +LKH +YPG++NGTG FQ + L +R+VYE + A+ Sbjct: 266 LEEMVYVENHLSKTGTKYYGEMTELLLKHKDYPGTDNGTGLFQVLVGLKMRKVYEQLTAE 325
>sp|P85112|KPPR_VITSX Phosphoribulokinase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1 Length = 89
Score = 33.5 bits (75), Expect = 0.87 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = +2
Query: 182 KLKELIYVESHLSNISSK 235 KL ELIYVESHLSN+S+K Sbjct: 72 KLDELIYVESHLSNLSTK 89
>sp|P81664|KPPR_PINPS Phosphoribulokinase (Fragments) OS=Pinus pinaster PE=1 SV=1 Length = 35
Score = 30.8 bits (68), Expect = 5.6 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = +2
Query: 116 FYGPDTYYNNEVTVLEMDGQFDK 184 FYG T +V+VLEMDGQFD+ Sbjct: 13 FYGEVTQQMLKVSVLEMDGQFDR 35
>sp|P51887|FMOD_CHICK Fibromodulin OS=Gallus gallus GN=FMOD PE=2 SV=1 Length = 380
Score = 30.8 bits (68), Expect = 5.6 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Frame = +2
Query: 134 YYNNEVTVLEMDGQFDKLKELIYVESHLSNISSKFYGEITQQMLKHTN--YPGSNNGT 301 + NN++T ++ +G FD EL ++ H + ISS+ G+ LK+ Y +NN T Sbjct: 116 FQNNQITAIQ-EGAFDNATELEWLALHNNQISSEKMGKRVFAKLKNLERLYMNNNNLT 172
>sp|P36023|YK44_YEAST Uncharacterized transcriptional regulatory protein YKR064W OS=Saccharomyces cerevisiae GN=YKR064W PE=1 SV=1 Length = 863
Score = 30.4 bits (67), Expect = 7.4 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Frame = +2
Query: 116 FYGPDTYYNNEVTVLEMDGQFDKLKELIYVESHLS--NISSKFYGEITQQMLKHT 274 FY P YN+++T + + +++E + +E + NI S FY + Q+ KHT Sbjct: 754 FY-PIGKYNDDMTGFKFQMRIKEMQEFLDMEKYSDRFNIFSSFYDHASSQLAKHT 807
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TRN4 |
Definition |
tr|A9TRN4|A9TRN4_PHYPA Phosphoribulokinase OS=Physcomitrella patens subsp. patens |
Align length |
133 |
Score (bit) |
221.0 |
E-value |
3.0e-56 |
Report |
|