DK948158 |
Clone id |
TST38A01NGRL0002_J06 |
Library |
TST38 |
Length |
657 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_J06. 5' end sequence. |
Accession |
DK948158 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
CACTCGCGCACTGCCGCGCACAACCAAAGAAAGGAATCGGTAGACGTAACCGAAGGGAGA AGGGACAGCGGCACAAAACAGAGAGGCACCTGCGAGAAGCGAAACGCACCATTATATATC AAGGTAAGAGGCCAAGATTCCTTTGCCGCTAGAAACTGCATTAGAGAAGGAGAGAAATGA AGTTCTCTCTTATGATGGTTCTCATCATCTGTGGGTATGCAGCAGCATTCAGCTTTACCC CAACAGCATTATGCAGCACAAATATCCCAAATAGTGCTTGGCGCGGTGGCGTCAGCGGTG CCGCGGCAGGACAGAATTGCGATACATGCAGAGGATTGTTGAGCGCTTCTCTCTATGACA AGCATATTGGTTATGACGCTCTTCATTGGGATAACACGCCTTGCCCGCCGAGCGCTGCAG GCCGATCCTACTACACACCTGATTGCTCCATAGCCTCTGGACCTGTCAACCCATACACAA GAGGCTGCTCAAAAATCACTCACTGCGCTCGTGATGTAAGTTAGCACAGGCATATCCCCA TGAAAGCATTGATATTCAGCCCAAAATATGCTGTCCATGCCTTTTACATATGAATTTCTT CTTCTTGCTAGTATCTTGGTTATTATGTTGTGAATAANAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q0VFM0 |
Definition |
sp|Q0VFM0|ZFPL1_XENTR Zinc finger protein-like 1 OS=Xenopus tropicalis |
Align length |
72 |
Score (bit) |
37.4 |
E-value |
0.065 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948158|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0002_J06, 5' (632 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q0VFM0|ZFPL1_XENTR Zinc finger protein-like 1 OS=Xenopus trop... 37 0.065 sp|A1L2S8|ZFPL1_XENLA Zinc finger protein-like 1 OS=Xenopus laev... 36 0.14 sp|P43233|CATB_CHICK Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1 34 0.72 sp|O14511|NRG2_HUMAN Pro-neuregulin-2, membrane-bound isoform OS... 32 2.1 sp|Q2YDD3|ZFPL1_BOVIN Zinc finger protein-like 1 OS=Bos taurus G... 31 6.1 sp|Q7NIR9|PURL_GLOVI Phosphoribosylformylglycinamidine synthase ... 31 6.1 sp|P33771|HEM6_SALTY Coproporphyrinogen 3 oxidase, aerobic OS=Sa... 31 6.1 sp|A9N336|HEM6_SALPB Coproporphyrinogen III oxidase, aerobic OS=... 31 6.1 sp|Q5PI28|HEM6_SALPA Coproporphyrinogen 3 oxidase, aerobic OS=Sa... 31 6.1 sp|Q8Z4U8|HEM6_SALTI Coproporphyrinogen 3 oxidase, aerobic OS=Sa... 30 7.9
>sp|Q0VFM0|ZFPL1_XENTR Zinc finger protein-like 1 OS=Xenopus tropicalis GN=zfpl1 PE=2 SV=1 Length = 320
Score = 37.4 bits (85), Expect = 0.065 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Frame = +3
Query: 315 NCDTCRGLLSASLYDKHIGYDALHWD-----NTPCPPSAAGRSYYTPDCSIASGPVNPYT 479 NC C LLS+ + + YD HW T PP+ A Y P C GPV P + Sbjct: 52 NCRLCNTLLSSKETARLVCYDLFHWSCLNDLATQLPPNTAPAGYRCPSC---QGPVFPPS 108
Query: 480 RGCSKITHCARD 515 S + R+ Sbjct: 109 NLVSPVAATLRE 120
>sp|A1L2S8|ZFPL1_XENLA Zinc finger protein-like 1 OS=Xenopus laevis GN=zfpl1 PE=2 SV=1 Length = 320
Score = 36.2 bits (82), Expect = 0.14 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 5/72 (6%) Frame = +3
Query: 315 NCDTCRGLLSASLYDKHIGYDALHWD-----NTPCPPSAAGRSYYTPDCSIASGPVNPYT 479 NC C LLS+ + + YD HW T PP+ A Y P C GPV P Sbjct: 52 NCRLCNTLLSSKETARLVCYDLFHWSCLNDLATQQPPNTAPAGYRCPSC---QGPVFPPN 108
Query: 480 RGCSKITHCARD 515 S + R+ Sbjct: 109 NLVSPVAATLRE 120
>sp|P43233|CATB_CHICK Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1 Length = 340
Score = 33.9 bits (76), Expect = 0.72 Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 7/91 (7%) Frame = +3
Query: 198 VLIICGYAAAFSFTPTALCSTNIPNSAWRGGVSGAAAGQNCDTCRGLLSASLYDKHIGYD 377 +L CG+ C+ P+ AWR T RGL+S LYD H+G Sbjct: 138 LLSCCGFECGMG------CNGGYPSGAWRYW-----------TERGLVSGGLYDSHVGCR 180
Query: 378 ALHWDNTPCP-------PSAAGRSYYTPDCS 449 A + PC P G TP CS Sbjct: 181 A--YTIPPCEHHVNGSRPPCTGEGGETPRCS 209
>sp|O14511|NRG2_HUMAN Pro-neuregulin-2, membrane-bound isoform OS=Homo sapiens GN=NRG2 PE=2 SV=1 Length = 850
Score = 32.3 bits (72), Expect = 2.1 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Frame = +3
Query: 273 SAWRGGVSGAAAGQNCDTCRGLLSAS---LYDKHIGYDALHWDNTPCPPSAAGRSYYTPD 443 S+ GG S +A+ + D G L+A +DAL D+ P P+A R+YY+ D Sbjct: 766 SSGSGGGSASASDDDADDADGALAAESTPFLGLRGAHDALRSDSPPLCPAADSRTYYSLD 825
>sp|Q2YDD3|ZFPL1_BOVIN Zinc finger protein-like 1 OS=Bos taurus GN=ZFPL1 PE=2 SV=1 Length = 312
Score = 30.8 bits (68), Expect = 6.1 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 5/72 (6%) Frame = +3
Query: 315 NCDTCRGLLSASLYDKHIGYDALHW-----DNTPCPPSAAGRSYYTPDCSIASGPVNPYT 479 NC C L+A + I YD HW P + A Y P C SGP+ P T Sbjct: 52 NCRLCNIPLAARETTRLICYDLFHWACLNERAAQLPRNTAPAGYQCPSC---SGPIFPPT 108
Query: 480 RGCSKITHCARD 515 + R+ Sbjct: 109 NLAGPVASALRE 120
>sp|Q7NIR9|PURL_GLOVI Phosphoribosylformylglycinamidine synthase II OS=Gloeobacter violaceus GN=purL PE=3 SV=1 Length = 774
Score = 30.8 bits (68), Expect = 6.1 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = -1
Query: 623 ITKILARRRNSYVKGMDSIFWAEYQCFHGDMPVL 522 IT+++ R N GM S+ W+E+ C+ P+L Sbjct: 28 ITELIGRHPNLNELGMFSVMWSEHCCYKNSRPLL 61
>sp|P33771|HEM6_SALTY Coproporphyrinogen 3 oxidase, aerobic OS=Salmonella typhimurium GN=hemF PE=3 SV=1 Length = 299
Score = 30.8 bits (68), Expect = 6.1 Identities = 21/80 (26%), Positives = 30/80 (37%) Frame = +3
Query: 237 TPTALCSTNIPNSAWRGGVSGAAAGQNCDTCRGLLSASLYDKHIGYDALHWDNTPCPPSA 416 T +A+ N +WR G + A + H+ DA+ T P Sbjct: 22 TLSAVDGANFVEDSWRREAGGGGRSRVLRNGGIFEQAGVNFSHVHGDAMPASATAHRPEL 81
Query: 417 AGRSYYTPDCSIASGPVNPY 476 AGRS+ S+ P NPY Sbjct: 82 AGRSFEAMGVSLVVHPHNPY 101
>sp|A9N336|HEM6_SALPB Coproporphyrinogen III oxidase, aerobic OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=hemF PE=3 SV=1 Length = 299
Score = 30.8 bits (68), Expect = 6.1 Identities = 21/80 (26%), Positives = 30/80 (37%) Frame = +3
Query: 237 TPTALCSTNIPNSAWRGGVSGAAAGQNCDTCRGLLSASLYDKHIGYDALHWDNTPCPPSA 416 T +A+ N +WR G + A + H+ DA+ T P Sbjct: 22 TLSAVDGANFVEDSWRREAGGGGRSRVLRNGGIFEQAGVNFSHVHGDAMPASATAHRPEL 81
Query: 417 AGRSYYTPDCSIASGPVNPY 476 AGRS+ S+ P NPY Sbjct: 82 AGRSFEAMGVSLVVHPHNPY 101
>sp|Q5PI28|HEM6_SALPA Coproporphyrinogen 3 oxidase, aerobic OS=Salmonella paratyphi A GN=hemF PE=3 SV=1 Length = 308
Score = 30.8 bits (68), Expect = 6.1 Identities = 21/80 (26%), Positives = 30/80 (37%) Frame = +3
Query: 237 TPTALCSTNIPNSAWRGGVSGAAAGQNCDTCRGLLSASLYDKHIGYDALHWDNTPCPPSA 416 T +A+ N +WR G + A + H+ DA+ T P Sbjct: 22 TLSAVDGANFVEDSWRREAGGGGRSRVLRNGGIFEQAGVNFSHVHGDAMPASATAHRPEL 81
Query: 417 AGRSYYTPDCSIASGPVNPY 476 AGRS+ S+ P NPY Sbjct: 82 AGRSFEAMGVSLVVHPHNPY 101
>sp|Q8Z4U8|HEM6_SALTI Coproporphyrinogen 3 oxidase, aerobic OS=Salmonella typhi GN=hemF PE=3 SV=1 Length = 299
Score = 30.4 bits (67), Expect = 7.9 Identities = 21/80 (26%), Positives = 30/80 (37%) Frame = +3
Query: 237 TPTALCSTNIPNSAWRGGVSGAAAGQNCDTCRGLLSASLYDKHIGYDALHWDNTPCPPSA 416 T +A+ N +WR G + A + H+ DA+ T P Sbjct: 22 TLSAVDGANFIEDSWRREAGGGGRSRVLRNGGIFEQAGVNFSHVHGDAMPASATAHRPEL 81
Query: 417 AGRSYYTPDCSIASGPVNPY 476 AGRS+ S+ P NPY Sbjct: 82 AGRSFEAMGVSLVVHPHNPY 101
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TKP1 |
Definition |
tr|A9TKP1|A9TKP1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
50 |
Score (bit) |
70.9 |
E-value |
6.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948158|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0002_J06, 5' (632 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TKP1|A9TKP1_PHYPA Predicted protein OS=Physcomitrella paten... 71 6e-11 tr|A9RS90|A9RS90_PHYPA Predicted protein OS=Physcomitrella paten... 65 4e-09 tr|A7PLB0|A7PLB0_VITVI Chromosome chr7 scaffold_20, whole genome... 64 6e-09 tr|Q9FHA6|Q9FHA6_ARATH Gb|AAF64534.1 (Putative uncharacterized p... 64 8e-09 tr|Q6TF27|Q6TF27_SOLCH Rapid alkalinization factor 3 OS=Solanum ... 63 1e-08 tr|Q8L9S6|Q8L9S6_ARATH Putative uncharacterized protein OS=Arabi... 61 5e-08 tr|A9NTU3|A9NTU3_PICSI Putative uncharacterized protein OS=Picea... 61 5e-08 tr|A9NXW6|A9NXW6_PICSI Putative uncharacterized protein OS=Picea... 59 2e-07 tr|A9PB44|A9PB44_POPTR Putative uncharacterized protein OS=Popul... 58 5e-07 tr|A9PAC7|A9PAC7_POPTR Putative uncharacterized protein OS=Popul... 57 7e-07 tr|B6UD79|B6UD79_MAIZE RALF OS=Zea mays PE=2 SV=1 55 3e-06 tr|B6UE55|B6UE55_MAIZE RALF OS=Zea mays PE=2 SV=1 55 3e-06 tr|Q9FZA0|Q9FZA0_ARATH F3H9.8 protein (Putative uncharacterized ... 52 2e-05 tr|B6TDV1|B6TDV1_MAIZE RALF OS=Zea mays PE=2 SV=1 52 3e-05 tr|B6TUL0|B6TUL0_MAIZE RALF OS=Zea mays PE=2 SV=1 51 5e-05 tr|A2ZT12|A2ZT12_ORYSJ Putative uncharacterized protein OS=Oryza... 50 1e-04 tr|Q94DK6|Q94DK6_ORYSJ cDNA clone:J013123C07, full insert sequen... 49 2e-04 tr|Q6NME6|Q6NME6_ARATH At2g33775 OS=Arabidopsis thaliana GN=At2g... 49 2e-04 tr|B6TQ80|B6TQ80_MAIZE Putative uncharacterized protein OS=Zea m... 49 2e-04 tr|A2WPU7|A2WPU7_ORYSI Putative uncharacterized protein OS=Oryza... 49 2e-04 tr|Q9AWJ6|Q9AWJ6_ORYSJ cDNA clone:J023049L07, full insert sequen... 49 3e-04 tr|Q8LDV7|Q8LDV7_ARATH Putative uncharacterized protein OS=Arabi... 49 3e-04 tr|Q2HIM9|Q2HIM9_ARATH At4g13950 OS=Arabidopsis thaliana PE=4 SV=1 49 3e-04 tr|B6U664|B6U664_MAIZE Rapid alkalinization factor 1 OS=Zea mays... 49 3e-04 tr|B6TU33|B6TU33_MAIZE Rapid alkalinization factor 1 OS=Zea mays... 49 3e-04 tr|A7PJ58|A7PJ58_VITVI Chromosome chr12 scaffold_18, whole genom... 49 3e-04 tr|A5BQT9|A5BQT9_VITVI Putative uncharacterized protein OS=Vitis... 49 3e-04 tr|A2ZQD0|A2ZQD0_ORYSJ Putative uncharacterized protein OS=Oryza... 49 3e-04 tr|A2WLS6|A2WLS6_ORYSI Putative uncharacterized protein OS=Oryza... 49 3e-04 tr|Q6ESP9|Q6ESP9_ORYSJ cDNA, clone: J100066I03, full insert sequ... 48 4e-04
>tr|A9TKP1|A9TKP1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_170611 PE=4 SV=1 Length = 183
Score = 70.9 bits (172), Expect = 6e-11 Identities = 32/50 (64%), Positives = 38/50 (76%) Frame = +3
Query: 363 HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCAR 512 +I Y AL + +PCP + AGRSYYTP+C ASGP NPY+RGCS IT CAR Sbjct: 134 YITYGALRANRSPCP-AGAGRSYYTPNCGAASGPPNPYSRGCSYITRCAR 182
>tr|A9RS90|A9RS90_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_118598 PE=4 SV=1 Length = 74
Score = 64.7 bits (156), Expect = 4e-09 Identities = 29/58 (50%), Positives = 40/58 (68%) Frame = +3
Query: 339 LSASLYDKHIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCAR 512 L A+ +I Y AL+ + +PCP + +GRSYYTP+C+ +GP PYTRGC +IT C R Sbjct: 17 LLAARRRSYISYGALNRNRSPCP-ARSGRSYYTPNCNSNAGPARPYTRGCLRITRCQR 73
>tr|A7PLB0|A7PLB0_VITVI Chromosome chr7 scaffold_20, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019503001 PE=4 SV=1 Length = 125
Score = 64.3 bits (155), Expect = 6e-09 Identities = 30/50 (60%), Positives = 34/50 (68%) Frame = +3
Query: 363 HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCAR 512 +I Y AL + PCPP + GRSYYT +C A GPV PYTRGCS IT C R Sbjct: 77 YISYGALSANRIPCPPRS-GRSYYTHNCFQARGPVRPYTRGCSTITRCRR 125
>tr|Q9FHA6|Q9FHA6_ARATH Gb|AAF64534.1 (Putative uncharacterized protein At5g67070) OS=Arabidopsis thaliana GN=At5g67070 PE=2 SV=1 Length = 129
Score = 63.9 bits (154), Expect = 8e-09 Identities = 29/50 (58%), Positives = 35/50 (70%) Frame = +3
Query: 363 HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCAR 512 +I Y AL + PCPP + GRSYYT +C A GPV+PY+RGCS IT C R Sbjct: 81 YISYGALSANRVPCPPRS-GRSYYTHNCFRARGPVHPYSRGCSSITRCRR 129
>tr|Q6TF27|Q6TF27_SOLCH Rapid alkalinization factor 3 OS=Solanum chacoense GN=RALF3 PE=2 SV=1 Length = 123
Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/50 (58%), Positives = 34/50 (68%) Frame = +3
Query: 363 HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCAR 512 +I Y AL + PCPP + GRSYYT C A+GP +PYTRGCS IT C R Sbjct: 75 YISYGALSANRIPCPPRS-GRSYYTHHCYHATGPAHPYTRGCSAITRCRR 123
>tr|Q8L9S6|Q8L9S6_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1 Length = 129
Score = 61.2 bits (147), Expect = 5e-08 Identities = 28/50 (56%), Positives = 34/50 (68%) Frame = +3
Query: 363 HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCAR 512 +I Y AL + PCPP + GRSYYT +C A GPV+PY+ GCS IT C R Sbjct: 81 YISYGALSANRVPCPPRS-GRSYYTHNCFRARGPVHPYSLGCSSITRCRR 129
>tr|A9NTU3|A9NTU3_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 139
Score = 61.2 bits (147), Expect = 5e-08 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 25/139 (17%) Frame = +3
Query: 180 KFSLMMVLIICGYAAAFSFTPTALCSTNIP-NSAWRGGVSG-------AAAGQNCDTCRG 335 + M++L++ + A S TAL S + S W G V+ ++AGQ CD G Sbjct: 3 RLGTMLLLVVSLFLMAESLH-TALNSQEVTATSNWLGSVASYEQRGFESSAGQICDGALG 61
Query: 336 ----------LLSASLYDK-------HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGP 464 ++ + + + +I Y AL + PC P + GRSYYT +C A+GP Sbjct: 62 ECNDETEEEFMMDSEAHGRLLRRVRYYISYGALAANRVPCRPRS-GRSYYTRNCYAATGP 120
Query: 465 VNPYTRGCSKITHCARDVS 521 V PY R C+ IT C R S Sbjct: 121 VRPYHRSCTAITRCKRYTS 139
>tr|A9NXW6|A9NXW6_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 100
Score = 59.3 bits (142), Expect = 2e-07 Identities = 28/53 (52%), Positives = 34/53 (64%) Frame = +3
Query: 363 HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCARDVS 521 +I Y AL + PCPP + GRSYYT +C A+ PV PY R C+ IT C RD S Sbjct: 49 YISYGALAANRIPCPPRS-GRSYYTRNCYRATEPVRPYHRSCTAITRCLRDTS 100
>tr|A9PB44|A9PB44_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 134
Score = 57.8 bits (138), Expect = 5e-07 Identities = 25/50 (50%), Positives = 34/50 (68%) Frame = +3
Query: 363 HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCAR 512 +I Y AL + PCP + +GRSYY+ +C + PVNPY+RGCS+I C R Sbjct: 86 YISYGALSANRIPCP-ARSGRSYYSHNCFASRAPVNPYSRGCSRIARCRR 134
>tr|A9PAC7|A9PAC7_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 131
Score = 57.4 bits (137), Expect = 7e-07 Identities = 26/50 (52%), Positives = 35/50 (70%) Frame = +3
Query: 363 HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCAR 512 +I Y AL + PCP + +GRSYY+ +C + PVNPY+RGCS+IT C R Sbjct: 83 YISYGALSANRIPCP-ARSGRSYYSHNCFKSRIPVNPYSRGCSRITRCRR 131
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