DK948158
Clone id TST38A01NGRL0002_J06
Library
Length 657
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_J06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
CACTCGCGCACTGCCGCGCACAACCAAAGAAAGGAATCGGTAGACGTAACCGAAGGGAGA
AGGGACAGCGGCACAAAACAGAGAGGCACCTGCGAGAAGCGAAACGCACCATTATATATC
AAGGTAAGAGGCCAAGATTCCTTTGCCGCTAGAAACTGCATTAGAGAAGGAGAGAAATGA
AGTTCTCTCTTATGATGGTTCTCATCATCTGTGGGTATGCAGCAGCATTCAGCTTTACCC
CAACAGCATTATGCAGCACAAATATCCCAAATAGTGCTTGGCGCGGTGGCGTCAGCGGTG
CCGCGGCAGGACAGAATTGCGATACATGCAGAGGATTGTTGAGCGCTTCTCTCTATGACA
AGCATATTGGTTATGACGCTCTTCATTGGGATAACACGCCTTGCCCGCCGAGCGCTGCAG
GCCGATCCTACTACACACCTGATTGCTCCATAGCCTCTGGACCTGTCAACCCATACACAA
GAGGCTGCTCAAAAATCACTCACTGCGCTCGTGATGTAAGTTAGCACAGGCATATCCCCA
TGAAAGCATTGATATTCAGCCCAAAATATGCTGTCCATGCCTTTTACATATGAATTTCTT
CTTCTTGCTAGTATCTTGGTTATTATGTTGTGAATAANAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q0VFM0
Definition sp|Q0VFM0|ZFPL1_XENTR Zinc finger protein-like 1 OS=Xenopus tropicalis
Align length 72
Score (bit) 37.4
E-value 0.065
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK948158|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_J06, 5'
(632 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q0VFM0|ZFPL1_XENTR Zinc finger protein-like 1 OS=Xenopus trop... 37 0.065
sp|A1L2S8|ZFPL1_XENLA Zinc finger protein-like 1 OS=Xenopus laev... 36 0.14
sp|P43233|CATB_CHICK Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1 34 0.72
sp|O14511|NRG2_HUMAN Pro-neuregulin-2, membrane-bound isoform OS... 32 2.1
sp|Q2YDD3|ZFPL1_BOVIN Zinc finger protein-like 1 OS=Bos taurus G... 31 6.1
sp|Q7NIR9|PURL_GLOVI Phosphoribosylformylglycinamidine synthase ... 31 6.1
sp|P33771|HEM6_SALTY Coproporphyrinogen 3 oxidase, aerobic OS=Sa... 31 6.1
sp|A9N336|HEM6_SALPB Coproporphyrinogen III oxidase, aerobic OS=... 31 6.1
sp|Q5PI28|HEM6_SALPA Coproporphyrinogen 3 oxidase, aerobic OS=Sa... 31 6.1
sp|Q8Z4U8|HEM6_SALTI Coproporphyrinogen 3 oxidase, aerobic OS=Sa... 30 7.9

>sp|Q0VFM0|ZFPL1_XENTR Zinc finger protein-like 1 OS=Xenopus
tropicalis GN=zfpl1 PE=2 SV=1
Length = 320

Score = 37.4 bits (85), Expect = 0.065
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Frame = +3

Query: 315 NCDTCRGLLSASLYDKHIGYDALHWD-----NTPCPPSAAGRSYYTPDCSIASGPVNPYT 479
NC C LLS+ + + YD HW T PP+ A Y P C GPV P +
Sbjct: 52 NCRLCNTLLSSKETARLVCYDLFHWSCLNDLATQLPPNTAPAGYRCPSC---QGPVFPPS 108

Query: 480 RGCSKITHCARD 515
S + R+
Sbjct: 109 NLVSPVAATLRE 120


>sp|A1L2S8|ZFPL1_XENLA Zinc finger protein-like 1 OS=Xenopus laevis
GN=zfpl1 PE=2 SV=1
Length = 320

Score = 36.2 bits (82), Expect = 0.14
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Frame = +3

Query: 315 NCDTCRGLLSASLYDKHIGYDALHWD-----NTPCPPSAAGRSYYTPDCSIASGPVNPYT 479
NC C LLS+ + + YD HW T PP+ A Y P C GPV P
Sbjct: 52 NCRLCNTLLSSKETARLVCYDLFHWSCLNDLATQQPPNTAPAGYRCPSC---QGPVFPPN 108

Query: 480 RGCSKITHCARD 515
S + R+
Sbjct: 109 NLVSPVAATLRE 120


>sp|P43233|CATB_CHICK Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1
Length = 340

Score = 33.9 bits (76), Expect = 0.72
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Frame = +3

Query: 198 VLIICGYAAAFSFTPTALCSTNIPNSAWRGGVSGAAAGQNCDTCRGLLSASLYDKHIGYD 377
+L CG+ C+ P+ AWR T RGL+S LYD H+G
Sbjct: 138 LLSCCGFECGMG------CNGGYPSGAWRYW-----------TERGLVSGGLYDSHVGCR 180

Query: 378 ALHWDNTPCP-------PSAAGRSYYTPDCS 449
A + PC P G TP CS
Sbjct: 181 A--YTIPPCEHHVNGSRPPCTGEGGETPRCS 209


>sp|O14511|NRG2_HUMAN Pro-neuregulin-2, membrane-bound isoform
OS=Homo sapiens GN=NRG2 PE=2 SV=1
Length = 850

Score = 32.3 bits (72), Expect = 2.1
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3

Query: 273 SAWRGGVSGAAAGQNCDTCRGLLSAS---LYDKHIGYDALHWDNTPCPPSAAGRSYYTPD 443
S+ GG S +A+ + D G L+A +DAL D+ P P+A R+YY+ D
Sbjct: 766 SSGSGGGSASASDDDADDADGALAAESTPFLGLRGAHDALRSDSPPLCPAADSRTYYSLD 825


>sp|Q2YDD3|ZFPL1_BOVIN Zinc finger protein-like 1 OS=Bos taurus
GN=ZFPL1 PE=2 SV=1
Length = 312

Score = 30.8 bits (68), Expect = 6.1
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Frame = +3

Query: 315 NCDTCRGLLSASLYDKHIGYDALHW-----DNTPCPPSAAGRSYYTPDCSIASGPVNPYT 479
NC C L+A + I YD HW P + A Y P C SGP+ P T
Sbjct: 52 NCRLCNIPLAARETTRLICYDLFHWACLNERAAQLPRNTAPAGYQCPSC---SGPIFPPT 108

Query: 480 RGCSKITHCARD 515
+ R+
Sbjct: 109 NLAGPVASALRE 120


>sp|Q7NIR9|PURL_GLOVI Phosphoribosylformylglycinamidine synthase II
OS=Gloeobacter violaceus GN=purL PE=3 SV=1
Length = 774

Score = 30.8 bits (68), Expect = 6.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1

Query: 623 ITKILARRRNSYVKGMDSIFWAEYQCFHGDMPVL 522
IT+++ R N GM S+ W+E+ C+ P+L
Sbjct: 28 ITELIGRHPNLNELGMFSVMWSEHCCYKNSRPLL 61


>sp|P33771|HEM6_SALTY Coproporphyrinogen 3 oxidase, aerobic
OS=Salmonella typhimurium GN=hemF PE=3 SV=1
Length = 299

Score = 30.8 bits (68), Expect = 6.1
Identities = 21/80 (26%), Positives = 30/80 (37%)
Frame = +3

Query: 237 TPTALCSTNIPNSAWRGGVSGAAAGQNCDTCRGLLSASLYDKHIGYDALHWDNTPCPPSA 416
T +A+ N +WR G + A + H+ DA+ T P
Sbjct: 22 TLSAVDGANFVEDSWRREAGGGGRSRVLRNGGIFEQAGVNFSHVHGDAMPASATAHRPEL 81

Query: 417 AGRSYYTPDCSIASGPVNPY 476
AGRS+ S+ P NPY
Sbjct: 82 AGRSFEAMGVSLVVHPHNPY 101


>sp|A9N336|HEM6_SALPB Coproporphyrinogen III oxidase, aerobic
OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
GN=hemF PE=3 SV=1
Length = 299

Score = 30.8 bits (68), Expect = 6.1
Identities = 21/80 (26%), Positives = 30/80 (37%)
Frame = +3

Query: 237 TPTALCSTNIPNSAWRGGVSGAAAGQNCDTCRGLLSASLYDKHIGYDALHWDNTPCPPSA 416
T +A+ N +WR G + A + H+ DA+ T P
Sbjct: 22 TLSAVDGANFVEDSWRREAGGGGRSRVLRNGGIFEQAGVNFSHVHGDAMPASATAHRPEL 81

Query: 417 AGRSYYTPDCSIASGPVNPY 476
AGRS+ S+ P NPY
Sbjct: 82 AGRSFEAMGVSLVVHPHNPY 101


>sp|Q5PI28|HEM6_SALPA Coproporphyrinogen 3 oxidase, aerobic
OS=Salmonella paratyphi A GN=hemF PE=3 SV=1
Length = 308

Score = 30.8 bits (68), Expect = 6.1
Identities = 21/80 (26%), Positives = 30/80 (37%)
Frame = +3

Query: 237 TPTALCSTNIPNSAWRGGVSGAAAGQNCDTCRGLLSASLYDKHIGYDALHWDNTPCPPSA 416
T +A+ N +WR G + A + H+ DA+ T P
Sbjct: 22 TLSAVDGANFVEDSWRREAGGGGRSRVLRNGGIFEQAGVNFSHVHGDAMPASATAHRPEL 81

Query: 417 AGRSYYTPDCSIASGPVNPY 476
AGRS+ S+ P NPY
Sbjct: 82 AGRSFEAMGVSLVVHPHNPY 101


>sp|Q8Z4U8|HEM6_SALTI Coproporphyrinogen 3 oxidase, aerobic
OS=Salmonella typhi GN=hemF PE=3 SV=1
Length = 299

Score = 30.4 bits (67), Expect = 7.9
Identities = 21/80 (26%), Positives = 30/80 (37%)
Frame = +3

Query: 237 TPTALCSTNIPNSAWRGGVSGAAAGQNCDTCRGLLSASLYDKHIGYDALHWDNTPCPPSA 416
T +A+ N +WR G + A + H+ DA+ T P
Sbjct: 22 TLSAVDGANFIEDSWRREAGGGGRSRVLRNGGIFEQAGVNFSHVHGDAMPASATAHRPEL 81

Query: 417 AGRSYYTPDCSIASGPVNPY 476
AGRS+ S+ P NPY
Sbjct: 82 AGRSFEAMGVSLVVHPHNPY 101


tr_hit_id A9TKP1
Definition tr|A9TKP1|A9TKP1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 50
Score (bit) 70.9
E-value 6.0e-11
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK948158|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_J06, 5'
(632 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TKP1|A9TKP1_PHYPA Predicted protein OS=Physcomitrella paten... 71 6e-11
tr|A9RS90|A9RS90_PHYPA Predicted protein OS=Physcomitrella paten... 65 4e-09
tr|A7PLB0|A7PLB0_VITVI Chromosome chr7 scaffold_20, whole genome... 64 6e-09
tr|Q9FHA6|Q9FHA6_ARATH Gb|AAF64534.1 (Putative uncharacterized p... 64 8e-09
tr|Q6TF27|Q6TF27_SOLCH Rapid alkalinization factor 3 OS=Solanum ... 63 1e-08
tr|Q8L9S6|Q8L9S6_ARATH Putative uncharacterized protein OS=Arabi... 61 5e-08
tr|A9NTU3|A9NTU3_PICSI Putative uncharacterized protein OS=Picea... 61 5e-08
tr|A9NXW6|A9NXW6_PICSI Putative uncharacterized protein OS=Picea... 59 2e-07
tr|A9PB44|A9PB44_POPTR Putative uncharacterized protein OS=Popul... 58 5e-07
tr|A9PAC7|A9PAC7_POPTR Putative uncharacterized protein OS=Popul... 57 7e-07
tr|B6UD79|B6UD79_MAIZE RALF OS=Zea mays PE=2 SV=1 55 3e-06
tr|B6UE55|B6UE55_MAIZE RALF OS=Zea mays PE=2 SV=1 55 3e-06
tr|Q9FZA0|Q9FZA0_ARATH F3H9.8 protein (Putative uncharacterized ... 52 2e-05
tr|B6TDV1|B6TDV1_MAIZE RALF OS=Zea mays PE=2 SV=1 52 3e-05
tr|B6TUL0|B6TUL0_MAIZE RALF OS=Zea mays PE=2 SV=1 51 5e-05
tr|A2ZT12|A2ZT12_ORYSJ Putative uncharacterized protein OS=Oryza... 50 1e-04
tr|Q94DK6|Q94DK6_ORYSJ cDNA clone:J013123C07, full insert sequen... 49 2e-04
tr|Q6NME6|Q6NME6_ARATH At2g33775 OS=Arabidopsis thaliana GN=At2g... 49 2e-04
tr|B6TQ80|B6TQ80_MAIZE Putative uncharacterized protein OS=Zea m... 49 2e-04
tr|A2WPU7|A2WPU7_ORYSI Putative uncharacterized protein OS=Oryza... 49 2e-04
tr|Q9AWJ6|Q9AWJ6_ORYSJ cDNA clone:J023049L07, full insert sequen... 49 3e-04
tr|Q8LDV7|Q8LDV7_ARATH Putative uncharacterized protein OS=Arabi... 49 3e-04
tr|Q2HIM9|Q2HIM9_ARATH At4g13950 OS=Arabidopsis thaliana PE=4 SV=1 49 3e-04
tr|B6U664|B6U664_MAIZE Rapid alkalinization factor 1 OS=Zea mays... 49 3e-04
tr|B6TU33|B6TU33_MAIZE Rapid alkalinization factor 1 OS=Zea mays... 49 3e-04
tr|A7PJ58|A7PJ58_VITVI Chromosome chr12 scaffold_18, whole genom... 49 3e-04
tr|A5BQT9|A5BQT9_VITVI Putative uncharacterized protein OS=Vitis... 49 3e-04
tr|A2ZQD0|A2ZQD0_ORYSJ Putative uncharacterized protein OS=Oryza... 49 3e-04
tr|A2WLS6|A2WLS6_ORYSI Putative uncharacterized protein OS=Oryza... 49 3e-04
tr|Q6ESP9|Q6ESP9_ORYSJ cDNA, clone: J100066I03, full insert sequ... 48 4e-04

>tr|A9TKP1|A9TKP1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_170611 PE=4 SV=1
Length = 183

Score = 70.9 bits (172), Expect = 6e-11
Identities = 32/50 (64%), Positives = 38/50 (76%)
Frame = +3

Query: 363 HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCAR 512
+I Y AL + +PCP + AGRSYYTP+C ASGP NPY+RGCS IT CAR
Sbjct: 134 YITYGALRANRSPCP-AGAGRSYYTPNCGAASGPPNPYSRGCSYITRCAR 182


>tr|A9RS90|A9RS90_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_118598 PE=4 SV=1
Length = 74

Score = 64.7 bits (156), Expect = 4e-09
Identities = 29/58 (50%), Positives = 40/58 (68%)
Frame = +3

Query: 339 LSASLYDKHIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCAR 512
L A+ +I Y AL+ + +PCP + +GRSYYTP+C+ +GP PYTRGC +IT C R
Sbjct: 17 LLAARRRSYISYGALNRNRSPCP-ARSGRSYYTPNCNSNAGPARPYTRGCLRITRCQR 73


>tr|A7PLB0|A7PLB0_VITVI Chromosome chr7 scaffold_20, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00019503001
PE=4 SV=1
Length = 125

Score = 64.3 bits (155), Expect = 6e-09
Identities = 30/50 (60%), Positives = 34/50 (68%)
Frame = +3

Query: 363 HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCAR 512
+I Y AL + PCPP + GRSYYT +C A GPV PYTRGCS IT C R
Sbjct: 77 YISYGALSANRIPCPPRS-GRSYYTHNCFQARGPVRPYTRGCSTITRCRR 125


>tr|Q9FHA6|Q9FHA6_ARATH Gb|AAF64534.1 (Putative uncharacterized
protein At5g67070) OS=Arabidopsis thaliana GN=At5g67070
PE=2 SV=1
Length = 129

Score = 63.9 bits (154), Expect = 8e-09
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = +3

Query: 363 HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCAR 512
+I Y AL + PCPP + GRSYYT +C A GPV+PY+RGCS IT C R
Sbjct: 81 YISYGALSANRVPCPPRS-GRSYYTHNCFRARGPVHPYSRGCSSITRCRR 129


>tr|Q6TF27|Q6TF27_SOLCH Rapid alkalinization factor 3 OS=Solanum
chacoense GN=RALF3 PE=2 SV=1
Length = 123

Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/50 (58%), Positives = 34/50 (68%)
Frame = +3

Query: 363 HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCAR 512
+I Y AL + PCPP + GRSYYT C A+GP +PYTRGCS IT C R
Sbjct: 75 YISYGALSANRIPCPPRS-GRSYYTHHCYHATGPAHPYTRGCSAITRCRR 123


>tr|Q8L9S6|Q8L9S6_ARATH Putative uncharacterized protein
OS=Arabidopsis thaliana PE=2 SV=1
Length = 129

Score = 61.2 bits (147), Expect = 5e-08
Identities = 28/50 (56%), Positives = 34/50 (68%)
Frame = +3

Query: 363 HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCAR 512
+I Y AL + PCPP + GRSYYT +C A GPV+PY+ GCS IT C R
Sbjct: 81 YISYGALSANRVPCPPRS-GRSYYTHNCFRARGPVHPYSLGCSSITRCRR 129


>tr|A9NTU3|A9NTU3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 139

Score = 61.2 bits (147), Expect = 5e-08
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 25/139 (17%)
Frame = +3

Query: 180 KFSLMMVLIICGYAAAFSFTPTALCSTNIP-NSAWRGGVSG-------AAAGQNCDTCRG 335
+ M++L++ + A S TAL S + S W G V+ ++AGQ CD G
Sbjct: 3 RLGTMLLLVVSLFLMAESLH-TALNSQEVTATSNWLGSVASYEQRGFESSAGQICDGALG 61

Query: 336 ----------LLSASLYDK-------HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGP 464
++ + + + +I Y AL + PC P + GRSYYT +C A+GP
Sbjct: 62 ECNDETEEEFMMDSEAHGRLLRRVRYYISYGALAANRVPCRPRS-GRSYYTRNCYAATGP 120

Query: 465 VNPYTRGCSKITHCARDVS 521
V PY R C+ IT C R S
Sbjct: 121 VRPYHRSCTAITRCKRYTS 139


>tr|A9NXW6|A9NXW6_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 100

Score = 59.3 bits (142), Expect = 2e-07
Identities = 28/53 (52%), Positives = 34/53 (64%)
Frame = +3

Query: 363 HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCARDVS 521
+I Y AL + PCPP + GRSYYT +C A+ PV PY R C+ IT C RD S
Sbjct: 49 YISYGALAANRIPCPPRS-GRSYYTRNCYRATEPVRPYHRSCTAITRCLRDTS 100


>tr|A9PB44|A9PB44_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 134

Score = 57.8 bits (138), Expect = 5e-07
Identities = 25/50 (50%), Positives = 34/50 (68%)
Frame = +3

Query: 363 HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCAR 512
+I Y AL + PCP + +GRSYY+ +C + PVNPY+RGCS+I C R
Sbjct: 86 YISYGALSANRIPCP-ARSGRSYYSHNCFASRAPVNPYSRGCSRIARCRR 134


>tr|A9PAC7|A9PAC7_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 131

Score = 57.4 bits (137), Expect = 7e-07
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +3

Query: 363 HIGYDALHWDNTPCPPSAAGRSYYTPDCSIASGPVNPYTRGCSKITHCAR 512
+I Y AL + PCP + +GRSYY+ +C + PVNPY+RGCS+IT C R
Sbjct: 83 YISYGALSANRIPCP-ARSGRSYYSHNCFKSRIPVNPYSRGCSRITRCRR 131