DK947990 |
Clone id |
TST38A01NGRL0002_B21 |
Library |
TST38 |
Length |
694 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_B21. 5' end sequence. |
Accession |
DK947990 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1830Contig1 |
Sequence |
ATAGTTTCCCAAAGTGTTAAAACTCTTTTCTTCTTCTTCTTCTTCTTCTTCTCACATTGA GAATATAGTATTAGTGGTAAGGATGCAAGAGGTTGATATAGGTCAAGTATTTATGTAGAA TTTATCGATCGAGGAGGCAAAAAGTAAGATCTCTGCGTTCGCGACTGAATTTTCATGCAC TGCCTGGCATCGGCATCAGAAGAACCCTAGCTCGCGGAACACAGGTTTGGAGGCGCCATG GATGCGTTTAGGAAGCAGCTGGACTCTCTTATGGGAGCAAACCGCAATGGAGATGTGCAG GTTGTGAAACGCAAGTACTACGACAGAGATGTTTGTCGACTTTACACAGCCGGCCTGTGC CCTCACGACCTCTTTCAACTCACGAAAATGGACTTGGGGTCGTGTACAAAGATCCATTCG TTGCAGCTGCGAAAAGAATACGACGAAGCAAAAGCAAAAGGTAAAGATAATTATGATAGA GAGCTCGAAGAGGCTCTTGAGAAGCTTATTTCGGAGTGTGATCGCAAAATTCAACGTGCC TTAAAGCGACTTGAAGCAGAAGATGCAAAGGCAGCTACAGCAATTCAAGTTTCTGAAGTT ACGAAGTCTCCAGAAGCAGCTGAATACAGCAGGCAAATTAAGGAGAAACTGAAAGAAGCT GAATATTTGGATCTTGAGGGGAGGGCGGATGATA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9CYI4 |
Definition |
sp|Q9CYI4|LUC7L_MOUSE Putative RNA-binding protein Luc7-like 1 OS=Mus musculus |
Align length |
153 |
Score (bit) |
98.2 |
E-value |
4.0e-20 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SKG5 |
Definition |
tr|A9SKG5|A9SKG5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
152 |
Score (bit) |
256.0 |
E-value |
1.0e-66 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947990|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0002_B21, 5' (694 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SKG5|A9SKG5_PHYPA Predicted protein OS=Physcomitrella paten... 256 1e-66 tr|A9U0I2|A9U0I2_PHYPA Predicted protein OS=Physcomitrella paten... 256 1e-66 tr|B8AF25|B8AF25_ORYSI Putative uncharacterized protein OS=Oryza... 239 1e-61 tr|Q6K8R4|Q6K8R4_ORYSJ Os02g0605600 protein OS=Oryza sativa subs... 238 2e-61 tr|Q0WS78|Q0WS78_ARATH Putative uncharacterized protein At3g0334... 236 8e-61 tr|A1L4X9|A1L4X9_ARATH At3g03340 OS=Arabidopsis thaliana PE=2 SV=1 236 8e-61 tr|A7PV43|A7PV43_VITVI Chromosome chr4 scaffold_32, whole genome... 234 5e-60 tr|A3A8V2|A3A8V2_ORYSJ Putative uncharacterized protein OS=Oryza... 234 5e-60 tr|B4FXT5|B4FXT5_MAIZE Putative uncharacterized protein OS=Zea m... 233 7e-60 tr|Q940U9|Q940U9_ARATH AT5g17440/K3M16_10 OS=Arabidopsis thalian... 231 4e-59 tr|A5C9T9|A5C9T9_VITVI Putative uncharacterized protein OS=Vitis... 231 4e-59 tr|Q2QKC5|Q2QKC5_WHEAT Pre-mRNA processing factor OS=Triticum ae... 230 6e-59 tr|Q84PA9|Q84PA9_ORYSJ Os03g0843500 protein OS=Oryza sativa subs... 229 1e-58 tr|Q75LD6|Q75LD6_ORYSJ cDNA clone:J033057K08, full insert sequen... 229 1e-58 tr|Q10AS2|Q10AS2_ORYSJ RNA-binding protein Luc7-like 2, putative... 229 1e-58 tr|Q10AS1|Q10AS1_ORYSJ RNA-binding protein Luc7-like 2, putative... 229 1e-58 tr|B8AN80|B8AN80_ORYSI Putative uncharacterized protein OS=Oryza... 229 1e-58 tr|B6TBQ7|B6TBQ7_MAIZE RNA-binding protein Luc7-like 2 OS=Zea ma... 229 2e-58 tr|B4FUS0|B4FUS0_MAIZE Putative uncharacterized protein OS=Zea m... 229 2e-58 tr|B6TXA2|B6TXA2_MAIZE RNA-binding protein Luc7-like 2 OS=Zea ma... 227 5e-58 tr|B4FAA7|B4FAA7_MAIZE Putative uncharacterized protein OS=Zea m... 227 5e-58 tr|A3APM7|A3APM7_ORYSJ Putative uncharacterized protein OS=Oryza... 218 2e-55 tr|Q9LF58|Q9LF58_ARATH Putative uncharacterized protein K3M16_10... 181 5e-44 tr|Q9SRN8|Q9SRN8_ARATH T21P5.24 protein OS=Arabidopsis thaliana ... 176 1e-42 tr|Q8L992|Q8L992_ARATH Putative uncharacterized protein OS=Arabi... 145 2e-33 tr|B0W9V3|B0W9V3_CULQU Splicing factor pTSR1 OS=Culex quinquefas... 111 4e-23 tr|B3RNA2|B3RNA2_TRIAD Putative uncharacterized protein OS=Trich... 108 2e-22 tr|Q16WP6|Q16WP6_AEDAE Splicing factor pTSR1, putative (Fragment... 107 9e-22 tr|B6NLZ0|B6NLZ0_BRAFL Putative uncharacterized protein OS=Branc... 103 1e-20 tr|Q4S4P5|Q4S4P5_TETNG Chromosome 2 SCAF14738, whole genome shot... 100 9e-20
>tr|A9SKG5|A9SKG5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_131290 PE=4 SV=1 Length = 322
Score = 256 bits (654), Expect = 1e-66 Identities = 126/152 (82%), Positives = 136/152 (89%) Frame = +1
Query: 238 MDAFRKQLDSLMGANRNGDVQVVKRKYYDRDVCRLYTAGLCPHDLFQLTKMDLGSCTKIH 417 MDAFRKQLD+LMGANRNGDV VKR Y+DRDVCRLY GLCPHDLFQLTKMDLG C+K+H Sbjct: 1 MDAFRKQLDALMGANRNGDVLEVKRNYWDRDVCRLYLTGLCPHDLFQLTKMDLGPCSKVH 60
Query: 418 SLQLRKEYDEAKAKGKDNYDRELEEALEKLISECDRKIQRALKRLEAEDAKAATAIQVSE 597 SLQLRKEY+EAKA GKDNYDR+LE+ LEK I ECDRKIQRALKRLE +DA AATAI VSE Sbjct: 61 SLQLRKEYEEAKANGKDNYDRDLEDCLEKHIVECDRKIQRALKRLEDDDAGAATAIAVSE 120
Query: 598 VTKSPEAAEYSRQIKEKLKEAEYLDLEGRADD 693 VTKSPEA EY++QIKEKLK AEYLDLEGR DD Sbjct: 121 VTKSPEALEYTKQIKEKLKAAEYLDLEGRGDD 152
>tr|A9U0I2|A9U0I2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_153817 PE=4 SV=1 Length = 416
Score = 256 bits (653), Expect = 1e-66 Identities = 126/152 (82%), Positives = 136/152 (89%) Frame = +1
Query: 238 MDAFRKQLDSLMGANRNGDVQVVKRKYYDRDVCRLYTAGLCPHDLFQLTKMDLGSCTKIH 417 MDAFRKQLD+LMGANRNGDV VKR Y+DRDVCRLY GLCPHDLFQLTKMDLG C+K+H Sbjct: 1 MDAFRKQLDALMGANRNGDVLEVKRNYWDRDVCRLYLTGLCPHDLFQLTKMDLGPCSKVH 60
Query: 418 SLQLRKEYDEAKAKGKDNYDRELEEALEKLISECDRKIQRALKRLEAEDAKAATAIQVSE 597 SLQLRKEY+EAKA GKDNYDR+LE+ LEK I ECDRKIQRALKRLE +DA AATAI VSE Sbjct: 61 SLQLRKEYEEAKANGKDNYDRDLEDCLEKHIVECDRKIQRALKRLEDDDAGAATAIAVSE 120
Query: 598 VTKSPEAAEYSRQIKEKLKEAEYLDLEGRADD 693 VT+SPEA EY+RQIKEKLK AEYLDLEGR DD Sbjct: 121 VTQSPEALEYTRQIKEKLKAAEYLDLEGRGDD 152
>tr|B8AF25|B8AF25_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_07988 PE=4 SV=1 Length = 418
Score = 239 bits (610), Expect = 1e-61 Identities = 115/151 (76%), Positives = 131/151 (86%) Frame = +1
Query: 238 MDAFRKQLDSLMGANRNGDVQVVKRKYYDRDVCRLYTAGLCPHDLFQLTKMDLGSCTKIH 417 MDA RKQLD LMGANRNGDV+ V RKYYDRDVCRL+ AGLCPHDLFQLTKMD+G C K+H Sbjct: 1 MDAIRKQLDQLMGANRNGDVREVSRKYYDRDVCRLFLAGLCPHDLFQLTKMDMGPCPKLH 60
Query: 418 SLQLRKEYDEAKAKGKDNYDRELEEALEKLISECDRKIQRALKRLEAEDAKAATAIQVSE 597 SLQLRKEY+EAKAKG DNYDRELEE +E+LISEC+RKIQRALKRLE +DAKAA AI V+E Sbjct: 61 SLQLRKEYEEAKAKGMDNYDRELEETIERLISECERKIQRALKRLEEDDAKAAIAISVTE 120
Query: 598 VTKSPEAAEYSRQIKEKLKEAEYLDLEGRAD 690 VT+S E E+S+QIKEK+KE + DLEG + Sbjct: 121 VTQSKEVIEFSKQIKEKMKEIDAFDLEGNTE 151
>tr|Q6K8R4|Q6K8R4_ORYSJ Os02g0605600 protein OS=Oryza sativa subsp. japonica GN=OJ1058_F07.16 PE=2 SV=1 Length = 418
Score = 238 bits (608), Expect = 2e-61 Identities = 114/151 (75%), Positives = 131/151 (86%) Frame = +1
Query: 238 MDAFRKQLDSLMGANRNGDVQVVKRKYYDRDVCRLYTAGLCPHDLFQLTKMDLGSCTKIH 417 MDA RKQLD LMGANRNGDV+ V RKYYDRDVCRL+ AGLCPHDLFQLTKMD+G C K+H Sbjct: 1 MDAIRKQLDQLMGANRNGDVREVSRKYYDRDVCRLFLAGLCPHDLFQLTKMDMGPCPKMH 60
Query: 418 SLQLRKEYDEAKAKGKDNYDRELEEALEKLISECDRKIQRALKRLEAEDAKAATAIQVSE 597 SLQLRKEY+EAKAKG DNYDRELEE +E+LISEC+RKIQRALKRLE +DAKAA AI ++E Sbjct: 61 SLQLRKEYEEAKAKGMDNYDRELEETIERLISECERKIQRALKRLEEDDAKAAIAISITE 120
Query: 598 VTKSPEAAEYSRQIKEKLKEAEYLDLEGRAD 690 VT+S E E+S+QIKEK+KE + DLEG + Sbjct: 121 VTQSKEVIEFSKQIKEKMKEIDAFDLEGNTE 151
>tr|Q0WS78|Q0WS78_ARATH Putative uncharacterized protein At3g03340 OS=Arabidopsis thaliana GN=At3g03340 PE=2 SV=1 Length = 298
Score = 236 bits (603), Expect = 8e-61 Identities = 116/151 (76%), Positives = 130/151 (86%) Frame = +1
Query: 238 MDAFRKQLDSLMGANRNGDVQVVKRKYYDRDVCRLYTAGLCPHDLFQLTKMDLGSCTKIH 417 MDA RKQLD LMGANRNGDVQ V RKYYDRDVCRLY +GLCPHDLFQLTKMD+G C K+H Sbjct: 1 MDAIRKQLDVLMGANRNGDVQEVNRKYYDRDVCRLYLSGLCPHDLFQLTKMDMGPCPKVH 60
Query: 418 SLQLRKEYDEAKAKGKDNYDRELEEALEKLISECDRKIQRALKRLEAEDAKAATAIQVSE 597 SLQLRKEY EA+AKG DNYDRELE+A+++LI ECDRKI RALKRL+ EDAKAA AI VSE Sbjct: 61 SLQLRKEYREARAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLQEEDAKAAIAISVSE 120
Query: 598 VTKSPEAAEYSRQIKEKLKEAEYLDLEGRAD 690 VT+SPE E S +IKEK+KEA+ DLEG+ D Sbjct: 121 VTQSPEILELSEKIKEKMKEADIHDLEGKMD 151
>tr|A1L4X9|A1L4X9_ARATH At3g03340 OS=Arabidopsis thaliana PE=2 SV=1 Length = 402
Score = 236 bits (603), Expect = 8e-61 Identities = 116/151 (76%), Positives = 130/151 (86%) Frame = +1
Query: 238 MDAFRKQLDSLMGANRNGDVQVVKRKYYDRDVCRLYTAGLCPHDLFQLTKMDLGSCTKIH 417 MDA RKQLD LMGANRNGDVQ V RKYYDRDVCRLY +GLCPHDLFQLTKMD+G C K+H Sbjct: 1 MDAIRKQLDVLMGANRNGDVQEVNRKYYDRDVCRLYLSGLCPHDLFQLTKMDMGPCPKVH 60
Query: 418 SLQLRKEYDEAKAKGKDNYDRELEEALEKLISECDRKIQRALKRLEAEDAKAATAIQVSE 597 SLQLRKEY EA+AKG DNYDRELE+A+++LI ECDRKI RALKRL+ EDAKAA AI VSE Sbjct: 61 SLQLRKEYREARAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLQEEDAKAAIAISVSE 120
Query: 598 VTKSPEAAEYSRQIKEKLKEAEYLDLEGRAD 690 VT+SPE E S +IKEK+KEA+ DLEG+ D Sbjct: 121 VTQSPEILELSEKIKEKMKEADIHDLEGKMD 151
>tr|A7PV43|A7PV43_VITVI Chromosome chr4 scaffold_32, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00025042001 PE=4 SV=1 Length = 425
Score = 234 bits (596), Expect = 5e-60 Identities = 113/151 (74%), Positives = 129/151 (85%) Frame = +1
Query: 238 MDAFRKQLDSLMGANRNGDVQVVKRKYYDRDVCRLYTAGLCPHDLFQLTKMDLGSCTKIH 417 MDA RKQLD LMGANRNGDV+ V RKYYDRDVCRL+ GLCPH+LFQLTKMD+G C K+H Sbjct: 1 MDAIRKQLDVLMGANRNGDVREVNRKYYDRDVCRLFLVGLCPHELFQLTKMDMGPCPKVH 60
Query: 418 SLQLRKEYDEAKAKGKDNYDRELEEALEKLISECDRKIQRALKRLEAEDAKAATAIQVSE 597 SLQLRKEY+EAKAKG NYDR+LE+ +++LI ECDRKI RALKRLE EDAKAA AI VSE Sbjct: 61 SLQLRKEYEEAKAKGVHNYDRDLEDVIDRLIVECDRKIARALKRLEDEDAKAAIAISVSE 120
Query: 598 VTKSPEAAEYSRQIKEKLKEAEYLDLEGRAD 690 VT++PE E S+QIKEKLKEA+ DLEG+ D Sbjct: 121 VTQTPEVLELSKQIKEKLKEADQFDLEGKTD 151
>tr|A3A8V2|A3A8V2_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_007224 PE=4 SV=1 Length = 490
Score = 234 bits (596), Expect = 5e-60 Identities = 114/154 (74%), Positives = 132/154 (85%), Gaps = 2/154 (1%) Frame = +1
Query: 235 AMDAFRKQLDSLMGANRNGDVQVVKRKYYDRDVCRLYTAGLCPHDLFQLTKMDLGSCTKI 414 AMDA RKQLD LMGANRNGDV+ V RKYYDRDVCRL+ AGLCPHDLFQLTKMD+G C K+ Sbjct: 58 AMDAIRKQLDQLMGANRNGDVREVSRKYYDRDVCRLFLAGLCPHDLFQLTKMDMGPCPKM 117
Query: 415 HSLQLRKE--YDEAKAKGKDNYDRELEEALEKLISECDRKIQRALKRLEAEDAKAATAIQ 588 HSLQLRK+ Y+EAKAKG DNYDRELEE +E+LISEC+RKIQRALKRLE +DAKAA AI Sbjct: 118 HSLQLRKDNRYEEAKAKGMDNYDRELEETIERLISECERKIQRALKRLEEDDAKAAIAIS 177
Query: 589 VSEVTKSPEAAEYSRQIKEKLKEAEYLDLEGRAD 690 ++EVT+S E E+S+QIKEK+KE + DLEG + Sbjct: 178 ITEVTQSKEVIEFSKQIKEKMKEIDAFDLEGNTE 211
>tr|B4FXT5|B4FXT5_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 410
Score = 233 bits (595), Expect = 7e-60 Identities = 112/151 (74%), Positives = 129/151 (85%) Frame = +1
Query: 238 MDAFRKQLDSLMGANRNGDVQVVKRKYYDRDVCRLYTAGLCPHDLFQLTKMDLGSCTKIH 417 MDA RKQLD LMGANRNGDV+ V RKYYDRDVCRLY AGLCPHDLFQLTKMD+G C K+H Sbjct: 1 MDAIRKQLDQLMGANRNGDVREVSRKYYDRDVCRLYLAGLCPHDLFQLTKMDMGPCPKLH 60
Query: 418 SLQLRKEYDEAKAKGKDNYDRELEEALEKLISECDRKIQRALKRLEAEDAKAATAIQVSE 597 SLQLRKEY+EAKAKG DNYDRELEE +E+LI EC+RKIQRALKRLE EDAKAA AI V+E Sbjct: 61 SLQLRKEYEEAKAKGTDNYDRELEETIERLIVECERKIQRALKRLEEEDAKAAIAISVTE 120
Query: 598 VTKSPEAAEYSRQIKEKLKEAEYLDLEGRAD 690 VT++ E E S+QI++K+K+ + DLEG + Sbjct: 121 VTQTKEVMELSKQIRQKMKDIDAFDLEGNTE 151
>tr|Q940U9|Q940U9_ARATH AT5g17440/K3M16_10 OS=Arabidopsis thaliana GN=At5g17440 PE=2 SV=1 Length = 404
Score = 231 bits (588), Expect = 4e-59 Identities = 112/151 (74%), Positives = 128/151 (84%) Frame = +1
Query: 238 MDAFRKQLDSLMGANRNGDVQVVKRKYYDRDVCRLYTAGLCPHDLFQLTKMDLGSCTKIH 417 MDA RKQLD LMGANRNGDV V RKYYDRDVCRLY +GLCPH+LFQLTKMD+G C K+H Sbjct: 1 MDAMRKQLDVLMGANRNGDVTEVNRKYYDRDVCRLYLSGLCPHELFQLTKMDMGPCPKVH 60
Query: 418 SLQLRKEYDEAKAKGKDNYDRELEEALEKLISECDRKIQRALKRLEAEDAKAATAIQVSE 597 SLQLRKEY +AKAKG DNYDRELE+A+++LI ECDRKI RAL RL+ EDAKAA AI V+E Sbjct: 61 SLQLRKEYKDAKAKGVDNYDRELEDAIDRLIVECDRKIGRALNRLQEEDAKAAIAISVTE 120
Query: 598 VTKSPEAAEYSRQIKEKLKEAEYLDLEGRAD 690 T+SPE E S+QIKEK+KEA+ DLEG+ D Sbjct: 121 FTQSPEILELSKQIKEKMKEADLHDLEGKTD 151
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