DK947950
Clone id TST38A01NGRL0002_A04
Library
Length 648
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_A04. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
CAATTACTAAGCTTGTTTTAGGGTTGCTGTGTGAGGCTCTGTCATGCAAATGGGGGTGAG
GTGGGGAAAAGCCTCGGCTACAGGGGTGCCTCCGGGGGAGAAGGCCCTGGCTGGGCAACC
CAGTGTCTACCTGGTTGGAGTGCTCGCGTCCCCGTATCTAAGGCTCCTTGAAGTCCGCTC
GCCTTCATGCAAGGAAAGCTGTTGCAGTGCTGGCAGTGCTGTGGTCGTGTGACTTCGGAC
GGAGTCTTCTAATGCAAGGGTTGCGGCTTGGGCGTGGGGAGCAAGCAACATTTGTGGAGT
TCGAGGTCTACTACGTCCCGAGTTGTCCCTTGGGTGTTGGTGCGACTTGCTGCCTTAGAA
TGAAGGGATTGTAAAATATTGCAGAAGGGCTTCTTGGGTTGGCGTTCATCACTTGCTGCT
GGATCTTATGTCTCTTGGACTAGCTGGTTCTGTCATGTTGTTCTCCTACATGTGGTGATG
TGTGGGGGTTGGAGGGAGTGGGTTGCTCATGTGGCAGATGCTCAGCTCACTAGTGGCACC
CTCCTTCTTGCCTTGCTCGGTGTGTCGAGGTTCGAGTGTTATGGTCTGCTAATGGTCATC
TGGAGGGAGGTGCTCATTGGGGGGTGGCAACCCTACTAGTATCTGTGG
■■Homology search results ■■ -
sp_hit_id Q24432
Definition sp|Q24432|OMB_DROME Optomotor-blind protein OS=Drosophila melanogaster
Align length 49
Score (bit) 33.1
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947950|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_A04, 5'
(648 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q24432|OMB_DROME Optomotor-blind protein OS=Drosophila melano... 33 1.3
sp|O75909|CCNK_HUMAN Cyclin-K OS=Homo sapiens GN=CCNK PE=1 SV=2 33 1.3
sp|Q5VYM1|CI131_HUMAN Uncharacterized protein C9orf131 OS=Homo s... 33 1.7
sp|Q9Z2K1|K1C16_MOUSE Keratin, type I cytoskeletal 16 OS=Mus mus... 32 2.2
sp|P84550|LBXCO_HUMAN Ladybird homeobox corepressor 1 OS=Homo sa... 32 2.2
sp|Q91660|GLI3_XENLA Zinc finger protein GLI3 OS=Xenopus laevis ... 32 2.9
sp|Q5IS56|GLI3_PANTR Zinc finger protein GLI3 OS=Pan troglodytes... 31 4.9
sp|P10071|GLI3_HUMAN Zinc finger protein GLI3 OS=Homo sapiens GN... 31 4.9
sp|Q8WXX7|AUTS2_HUMAN Autism susceptibility gene 2 protein OS=Ho... 31 4.9
sp|P19622|HME2_HUMAN Homeobox protein engrailed-2 OS=Homo sapien... 31 4.9
sp|A2A5X5|KR10D_MOUSE Putative keratin-associated protein 10-lik... 31 6.4
sp|Q61602|GLI3_MOUSE Zinc finger protein GLI3 OS=Mus musculus GN... 31 6.4
sp|O87838|FCTA_STRCO Formyl-coenzyme A transferase OS=Streptomyc... 31 6.4
sp|Q82M40|FCTA_STRAW Formyl-coenzyme A transferase OS=Streptomyc... 31 6.4
sp|Q6NUA0|CHRD1_XENLA Cysteine and histidine-rich domain-contain... 31 6.4
sp|Q29RL2|CHRD1_BOVIN Cysteine and histidine-rich domain-contain... 31 6.4
sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=O... 30 8.4
sp|Q5RD91|CHRD1_PONAB Cysteine and histidine-rich domain-contain... 30 8.4
sp|Q9UHD1|CHRD1_HUMAN Cysteine and histidine-rich domain-contain... 30 8.4
sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein... 30 8.4

>sp|Q24432|OMB_DROME Optomotor-blind protein OS=Drosophila
melanogaster GN=bi PE=1 SV=3
Length = 972

Score = 33.1 bits (74), Expect = 1.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3

Query: 589 ADHNTRTSTHRARQEGGCH**AEHLPHEQPTPSNPHTSPHVGEQHDRTS 443
A H+ T H +Q+ H +H H+QP +PH H+ H T+
Sbjct: 921 AQHHHHTQAHHQQQQHQSHHQQQH--HQQPAQPHPHHQTHLHSHHGATT 967


>sp|O75909|CCNK_HUMAN Cyclin-K OS=Homo sapiens GN=CCNK PE=1 SV=2
Length = 580

Score = 33.1 bits (74), Expect = 1.3
Identities = 42/169 (24%), Positives = 56/169 (33%), Gaps = 12/169 (7%)
Frame = -3

Query: 520 HLPHE-------QPTPSNPHTSPHVGEQHDRTS*SKR----HKIQQQVMNANPRSPSAIF 374
H PH+ QPTP P Q S ++ QQQ P+ PS
Sbjct: 268 HTPHQLQQPPSLQPTPQVPQVQQSQPSQSSEPSQPQQKDPQQPAQQQQPAQQPKKPSPQP 327

Query: 373 YNPFILRQQVAPTPKGQLGT**TSNSTNVACSPRPSRNPCIRRLRPKSHDHXXXXXXXAF 194
+P +++ V +PK + N A P P + P I P
Sbjct: 328 SSPRQVKRAVVVSPKEE----------NKAAEPPPPKIPKIETTHPPLPPAHPPPDRKPP 377

Query: 193 LA*RRADFKEP*IRGREHSNQVD-TGLPSQGLLPRRHPCSRGFSPPHPH 50
LA + + P VD T LP + P HP PP PH
Sbjct: 378 LAAALGEAEPP--------GPVDATDLPKVQIPPPAHPAPVHQPPPLPH 418


>sp|Q5VYM1|CI131_HUMAN Uncharacterized protein C9orf131 OS=Homo
sapiens GN=C9orf131 PE=2 SV=3
Length = 1079

Score = 32.7 bits (73), Expect = 1.7
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 11/49 (22%)
Frame = -2

Query: 272 PKPQPLH*KTPSEVTRPQHCQHCN--------SFPCMKAS---GLQGAL 159
P+ QP + S++ P+HC+HC SFP +KAS GLQ L
Sbjct: 1015 PQDQPEAGRRASDILTPRHCKHCPWAHMEKYLSFPTLKASLTRGLQKVL 1063


>sp|Q9Z2K1|K1C16_MOUSE Keratin, type I cytoskeletal 16 OS=Mus
musculus GN=Krt16 PE=1 SV=3
Length = 469

Score = 32.3 bits (72), Expect = 2.2
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +2

Query: 485 GVGGSGLLMWQMLSSLVAPSFLPCSVCRGSSVMVC*WSSGGRCSLGGG 628
G+GG +M S L S S C G SV +SSGG C +GGG
Sbjct: 19 GIGGGSS---RMSSILAGGSCRAPSTCGGMSVTSSRFSSGGVCGIGGG 63


>sp|P84550|LBXCO_HUMAN Ladybird homeobox corepressor 1 OS=Homo
sapiens GN=LBXCOR1 PE=1 SV=1
Length = 965

Score = 32.3 bits (72), Expect = 2.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1

Query: 46 ANGGEVGKSLGYRGASGGEGPGWATQCLPG 135
ANGG G+ G G GG GPG + PG
Sbjct: 290 ANGGSGGQGKGGAGGGGGGGPGCGAEMAPG 319


>sp|Q91660|GLI3_XENLA Zinc finger protein GLI3 OS=Xenopus laevis
GN=gli3 PE=2 SV=1
Length = 1569

Score = 32.0 bits (71), Expect = 2.9
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Frame = -3

Query: 118 LPSQGLLPRRHPCSRG---FSPPHPHL-----HDRASHSNPKTSLV 5
LP + P R+P S FSPPHP++ + R+ HS+P S++
Sbjct: 172 LPFFRISPHRNPASASDSPFSPPHPYISPYMDYIRSLHSSPSLSMI 217


>sp|Q5IS56|GLI3_PANTR Zinc finger protein GLI3 OS=Pan troglodytes
GN=GLI3 PE=2 SV=1
Length = 1580

Score = 31.2 bits (69), Expect = 4.9
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Frame = -3

Query: 118 LPSQGLLPRRHPCSRG---FSPPHPHLHD-----RASHSNPKTSLV 5
LP + P R+P + FSPPHP+++ R+ HS+P S++
Sbjct: 171 LPFIRISPHRNPAAASESPFSPPHPYINPYMDYIRSLHSSPSLSMI 216


>sp|P10071|GLI3_HUMAN Zinc finger protein GLI3 OS=Homo sapiens
GN=GLI3 PE=1 SV=5
Length = 1580

Score = 31.2 bits (69), Expect = 4.9
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Frame = -3

Query: 118 LPSQGLLPRRHPCSRG---FSPPHPHLHD-----RASHSNPKTSLV 5
LP + P R+P + FSPPHP+++ R+ HS+P S++
Sbjct: 171 LPFIRISPHRNPAAASESPFSPPHPYINPYMDYIRSLHSSPSLSMI 216


>sp|Q8WXX7|AUTS2_HUMAN Autism susceptibility gene 2 protein OS=Homo
sapiens GN=AUTS2 PE=2 SV=1
Length = 1259

Score = 31.2 bits (69), Expect = 4.9
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -2

Query: 422 PAASDERQPKKPFCNILQSLHSKAASRTNTQGTTRDVVDLELHKCCLLP----TPKPQPL 255
P+A QP + + SL+S ++SR++T T+ H P P PL
Sbjct: 382 PSAQSLSQPLSAYNSSSLSLNSLSSSRSSTPAKTQPAPPHISHHPSASPFPLSLPNHSPL 441

Query: 254 H*KTPSEVTRPQHCQHCNSF 195
H TP+ + P H H N F
Sbjct: 442 HSFTPT-LQPPAHSHHPNMF 460


>sp|P19622|HME2_HUMAN Homeobox protein engrailed-2 OS=Homo sapiens
GN=EN2 PE=2 SV=3
Length = 333

Score = 31.2 bits (69), Expect = 4.9
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +1

Query: 25 CCVRLCHANGGEVGKSLGYRGASGGEGPGWATQCLPGWSARVPVSKAP*SP 177
CC GG G G GA GG G G + Q L G +R P P +P
Sbjct: 88 CCAGAGGGRGGGAGGEGGASGAEGGGGAGGSEQLL-GSGSREPRQNPPCAP 137


tr_hit_id Q4T900
Definition tr|Q4T900|Q4T900_TETNG Chromosome 1 SCAF7673, whole genome shotgun sequence OS=Tetraodon nigroviridis
Align length 44
Score (bit) 38.5
E-value 0.35
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947950|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_A04, 5'
(648 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q4T900|Q4T900_TETNG Chromosome 1 SCAF7673, whole genome shotg... 39 0.35
tr|A3MXB4|A3MXB4_PYRCJ Putative uncharacterized protein OS=Pyrob... 35 3.9
tr|Q39RB4|Q39RB4_GEOMG Nitroreductase OS=Geobacter metallireduce... 35 4.0
tr|B3NU30|B3NU30_DROER GG18707 (Fragment) OS=Drosophila erecta G... 35 5.1
tr|B7G6L2|B7G6L2_PHATR Predicted protein OS=Phaeodactylum tricor... 35 5.2
tr|Q4QIC5|Q4QIC5_LEIMA Putative uncharacterized protein OS=Leish... 35 5.2
tr|B2WJJ6|B2WJJ6_PYRTR Putative uncharacterized protein OS=Pyren... 35 5.2
tr|Q392G5|Q392G5_BURS3 Putative uncharacterized protein OS=Burkh... 34 6.7
tr|A2QVY5|A2QVY5_ASPNC Contig An11c0120, complete genome OS=Aspe... 34 6.7
tr|B2B690|B2B690_PODAN Predicted CDS Pa_2_7070 OS=Podospora anse... 34 6.7
tr|B2ASG2|B2ASG2_PODAN Predicted CDS Pa_1_23390 OS=Podospora ans... 34 6.7
tr|A1ZDJ0|A1ZDJ0_9SPHI Membrane protein, putative OS=Microscilla... 34 8.8
tr|B2WAU3|B2WAU3_PYRTR CHCH domain containing protein OS=Pyrenop... 34 8.8

>tr|Q4T900|Q4T900_TETNG Chromosome 1 SCAF7673, whole genome shotgun
sequence OS=Tetraodon nigroviridis GN=GSTENG00004986001
PE=4 SV=1
Length = 164

Score = 38.5 bits (88), Expect = 0.35
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2

Query: 458 LFSYMW*CVGVGGSGLLMWQMLSSLVAPSFLPCSVCRGSSVMVC 589
L +Y+W C G+GG GLLM ++ ++V + CS C S+M+C
Sbjct: 12 LSTYIWYCGGLGGGGLLM--LVPAVVFITLGKCSCCWNESIMMC 53


>tr|A3MXB4|A3MXB4_PYRCJ Putative uncharacterized protein
OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1)
GN=Pcal_1864 PE=4 SV=1
Length = 626

Score = 35.0 bits (79), Expect = 3.9
Identities = 49/184 (26%), Positives = 67/184 (36%), Gaps = 14/184 (7%)
Frame = -3

Query: 511 HEQPTPSNPHTSPHVGEQHDRTS*SKRHKIQQQVMNANPRSPSAIFYNPFILRQQVAPTP 332
H P P + H +PH+ H RT ++ H +Q+ + P P N L + P P
Sbjct: 154 HVPPNPKHHHPTPHIAHPHGRTP-TRLHSRRQEAPHTLPPQP-----NTLRLPSRQNPKP 207

Query: 331 KGQLGT**TSNSTNVACSPRPSR----NPCIRRLRPKSHD----HXXXXXXXAFLA*RRA 176
+ T + + P P R NP RR P H H + RRA
Sbjct: 208 HKHIPQPHTPHKERL---PTPKRLEGDNP--RRAAPLHHQRVPHHLYPRLRVGHVLLRRA 262

Query: 175 ---DFKEP*IRGREHSNQVDTGLPSQG-LLPRRHPCSRGFSPPHPH--LHDRASHSNPKT 14
FK +R P Q PRR P PPHP +H SNP
Sbjct: 263 GGTSFKHREVR------------PVQAQAAPRRLP----HHPPHPQRLVHAEDPLSNPPQ 306

Query: 13 SLVI 2
+L++
Sbjct: 307 NLLL 310


>tr|Q39RB4|Q39RB4_GEOMG Nitroreductase OS=Geobacter metallireducens
(strain GS-15 / ATCC 53774 / DSM 7210) GN=Gmet_2995 PE=4
SV=1
Length = 271

Score = 35.0 bits (79), Expect = 4.0
Identities = 30/123 (24%), Positives = 43/123 (34%), Gaps = 30/123 (24%)
Frame = -1

Query: 306 PRTPQMLLAPHAQAATLALEDSVRSHTTTALP---------------------ALQQLSL 190
P P+ L P A L + S+R T A+P A++ L +
Sbjct: 70 PPPPEAPLPPEILDAYLRMRRSIRRFRTEAVPRKTIESLLDVVRYAPTSSNRQAVRWLVI 129

Query: 189 HEGERTSRSL---------RYGDASTPTR*TLGCPARAFSPGGTPVAEAFPHLTPICMTE 37
H+ R R D S P R TL R+++ G P+ PHL C
Sbjct: 130 HDTAEVRRLTGLVIDWFRSRLADPSCPNRTTLAAMIRSWNNGSDPICRNAPHLVIPCTPR 189

Query: 36 PHT 28
H+
Sbjct: 190 QHS 192


>tr|B3NU30|B3NU30_DROER GG18707 (Fragment) OS=Drosophila erecta
GN=GG18707 PE=4 SV=1
Length = 523

Score = 34.7 bits (78), Expect = 5.1
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3

Query: 589 ADHNTRTSTHRARQEGGCH**AEHLPHEQPTPSNPHTSPHVGEQHDRTS 443
A H+ T H Q+ H +H H+QP S+PH H+ H T+
Sbjct: 472 AQHHHHTQAHHQHQQHQSHHQQQH--HQQPAQSHPHHQTHLHSHHGATT 518


>tr|B7G6L2|B7G6L2_PHATR Predicted protein OS=Phaeodactylum tricornutum
CCAP 1055/1 GN=PHATRDRAFT_48282 PE=4 SV=1
Length = 1567

Score = 34.7 bits (78), Expect = 5.2
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 6/138 (4%)
Frame = -1

Query: 405 TPTQEALLQYFTIPSF*GSKSHQHPRDNSGRSRP-RTPQMLLAPHAQAATLALEDSVRSH 229
+P+ L F++PS S+S R + + P +P + L+ A+ L + S
Sbjct: 1140 SPSLTPSLFPFSLPSTTPSRSPAFERSPTPSTTPSNSPSLQLSEEPSASPLVAQSRSPST 1199

Query: 228 TTTALPALQ-QLSLHEGERTSRSLRYGDASTPTR*TLGCPARAFS--PGGTPVAE--AFP 64
+ P+ + + S+ E S + YG S P+ PAR S P TP + A P
Sbjct: 1200 VPSLSPSSRPESSIRPSEGPSSTPSYGPVSPPSTTPSRSPAREPSRVPSTTPSSSPSALP 1259

Query: 63 HLTPICMTEPHTATLKQA 10
T I P TAT +A
Sbjct: 1260 STTQITTGVPTTATPGEA 1277


>tr|Q4QIC5|Q4QIC5_LEIMA Putative uncharacterized protein OS=Leishmania
major GN=LmjF08.0440 PE=4 SV=1
Length = 2434

Score = 34.7 bits (78), Expect = 5.2
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Frame = -1

Query: 315 RSRPRTPQMLLAPHAQAATLALEDSVRSHTT--TALPALQQLSL---HEGERTSRSLRYG 151
RS PR ++L TLA E +V S + T++P L + + + T + G
Sbjct: 1445 RSEPRAAEVL---RRVLLTLARESAVGSSSAAGTSVPVLSRSGMSVAYVKALTVPAASLG 1501

Query: 150 DASTPTR*TLGCPARAFSPGGTP-VAEAFPHLT 55
D STPT T P A GGTP V A LT
Sbjct: 1502 DLSTPTMLTTSDPTTAADGGGTPEVVAALKELT 1534


>tr|B2WJJ6|B2WJJ6_PYRTR Putative uncharacterized protein
OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
GN=PTRG_10342 PE=4 SV=1
Length = 284

Score = 34.7 bits (78), Expect = 5.2
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -1

Query: 333 PRDNSGRSRPRTPQMLLAPHAQAATLALEDSVRSHTTTALPALQQLSLHEGERTS 169
P DNS +P P L PH QA+ + + TT+ L+LHEG +++
Sbjct: 164 PEDNSSPKQPDRPMRLDIPHPQASRFDSQQDISGSTTSNTTVF--LALHEGPKSA 216


>tr|Q392G5|Q392G5_BURS3 Putative uncharacterized protein
OS=Burkholderia sp. (strain 383) GN=Bcep18194_B2540 PE=4
SV=1
Length = 233

Score = 34.3 bits (77), Expect = 6.7
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2

Query: 242 ESSNARVAAWAWGASNICGVRGLLRPELSLGCWCDLLP*NEGIV 373
++S + WA G+ +CG+ L +LSLG LLP N G+V
Sbjct: 114 DASTQLIPQWAGGSLQLCGIAFQLFAKLSLGRSFGLLPANRGVV 157


>tr|A2QVY5|A2QVY5_ASPNC Contig An11c0120, complete genome
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=An11g03070 PE=4 SV=1
Length = 457

Score = 34.3 bits (77), Expect = 6.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3

Query: 468 TCGDVWGLEGVGCSCGRCSAH--*WHPPSCLARCVEVRVLWSANGH 599
+C W EG+ C CG C+ H PP ++R LW +GH
Sbjct: 95 SCTTAWTREGLICVCGHCNPHHDSARPPLSSRDRAKMRKLWKDSGH 140


>tr|B2B690|B2B690_PODAN Predicted CDS Pa_2_7070 OS=Podospora
anserina PE=4 SV=1
Length = 317

Score = 34.3 bits (77), Expect = 6.7
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Frame = -1

Query: 327 DNSGRSRPRTPQMLLAPHAQAATL-ALEDSVRSHTTTALPALQQLSLHEGERTSRSLRYG 151
D S + P L+P + +L +L++S R + LP+L LSL E E +R L
Sbjct: 122 DFSSPTSPSLSPPALSPSSSPTSLPSLDESPRPSSRPELPSLITLSLPENETATRPLSVH 181

Query: 150 DASTPTR*TLGCPARAFSPGGTPVAEAFPHLTPICMTEPHTATL 19
A + T LG R++ P L+P E H L
Sbjct: 182 SARSGTGSALGSRPRSYKRIDRPTI-----LSPTATAELHALLL 220