DK947950 |
Clone id |
TST38A01NGRL0002_A04 |
Library |
TST38 |
Length |
648 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_A04. 5' end sequence. |
Accession |
DK947950 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
CAATTACTAAGCTTGTTTTAGGGTTGCTGTGTGAGGCTCTGTCATGCAAATGGGGGTGAG GTGGGGAAAAGCCTCGGCTACAGGGGTGCCTCCGGGGGAGAAGGCCCTGGCTGGGCAACC CAGTGTCTACCTGGTTGGAGTGCTCGCGTCCCCGTATCTAAGGCTCCTTGAAGTCCGCTC GCCTTCATGCAAGGAAAGCTGTTGCAGTGCTGGCAGTGCTGTGGTCGTGTGACTTCGGAC GGAGTCTTCTAATGCAAGGGTTGCGGCTTGGGCGTGGGGAGCAAGCAACATTTGTGGAGT TCGAGGTCTACTACGTCCCGAGTTGTCCCTTGGGTGTTGGTGCGACTTGCTGCCTTAGAA TGAAGGGATTGTAAAATATTGCAGAAGGGCTTCTTGGGTTGGCGTTCATCACTTGCTGCT GGATCTTATGTCTCTTGGACTAGCTGGTTCTGTCATGTTGTTCTCCTACATGTGGTGATG TGTGGGGGTTGGAGGGAGTGGGTTGCTCATGTGGCAGATGCTCAGCTCACTAGTGGCACC CTCCTTCTTGCCTTGCTCGGTGTGTCGAGGTTCGAGTGTTATGGTCTGCTAATGGTCATC TGGAGGGAGGTGCTCATTGGGGGGTGGCAACCCTACTAGTATCTGTGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q24432 |
Definition |
sp|Q24432|OMB_DROME Optomotor-blind protein OS=Drosophila melanogaster |
Align length |
49 |
Score (bit) |
33.1 |
E-value |
1.3 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947950|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0002_A04, 5' (648 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q24432|OMB_DROME Optomotor-blind protein OS=Drosophila melano... 33 1.3 sp|O75909|CCNK_HUMAN Cyclin-K OS=Homo sapiens GN=CCNK PE=1 SV=2 33 1.3 sp|Q5VYM1|CI131_HUMAN Uncharacterized protein C9orf131 OS=Homo s... 33 1.7 sp|Q9Z2K1|K1C16_MOUSE Keratin, type I cytoskeletal 16 OS=Mus mus... 32 2.2 sp|P84550|LBXCO_HUMAN Ladybird homeobox corepressor 1 OS=Homo sa... 32 2.2 sp|Q91660|GLI3_XENLA Zinc finger protein GLI3 OS=Xenopus laevis ... 32 2.9 sp|Q5IS56|GLI3_PANTR Zinc finger protein GLI3 OS=Pan troglodytes... 31 4.9 sp|P10071|GLI3_HUMAN Zinc finger protein GLI3 OS=Homo sapiens GN... 31 4.9 sp|Q8WXX7|AUTS2_HUMAN Autism susceptibility gene 2 protein OS=Ho... 31 4.9 sp|P19622|HME2_HUMAN Homeobox protein engrailed-2 OS=Homo sapien... 31 4.9 sp|A2A5X5|KR10D_MOUSE Putative keratin-associated protein 10-lik... 31 6.4 sp|Q61602|GLI3_MOUSE Zinc finger protein GLI3 OS=Mus musculus GN... 31 6.4 sp|O87838|FCTA_STRCO Formyl-coenzyme A transferase OS=Streptomyc... 31 6.4 sp|Q82M40|FCTA_STRAW Formyl-coenzyme A transferase OS=Streptomyc... 31 6.4 sp|Q6NUA0|CHRD1_XENLA Cysteine and histidine-rich domain-contain... 31 6.4 sp|Q29RL2|CHRD1_BOVIN Cysteine and histidine-rich domain-contain... 31 6.4 sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=O... 30 8.4 sp|Q5RD91|CHRD1_PONAB Cysteine and histidine-rich domain-contain... 30 8.4 sp|Q9UHD1|CHRD1_HUMAN Cysteine and histidine-rich domain-contain... 30 8.4 sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein... 30 8.4
>sp|Q24432|OMB_DROME Optomotor-blind protein OS=Drosophila melanogaster GN=bi PE=1 SV=3 Length = 972
Score = 33.1 bits (74), Expect = 1.3 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = -3
Query: 589 ADHNTRTSTHRARQEGGCH**AEHLPHEQPTPSNPHTSPHVGEQHDRTS 443 A H+ T H +Q+ H +H H+QP +PH H+ H T+ Sbjct: 921 AQHHHHTQAHHQQQQHQSHHQQQH--HQQPAQPHPHHQTHLHSHHGATT 967
>sp|O75909|CCNK_HUMAN Cyclin-K OS=Homo sapiens GN=CCNK PE=1 SV=2 Length = 580
Score = 33.1 bits (74), Expect = 1.3 Identities = 42/169 (24%), Positives = 56/169 (33%), Gaps = 12/169 (7%) Frame = -3
Query: 520 HLPHE-------QPTPSNPHTSPHVGEQHDRTS*SKR----HKIQQQVMNANPRSPSAIF 374 H PH+ QPTP P Q S ++ QQQ P+ PS Sbjct: 268 HTPHQLQQPPSLQPTPQVPQVQQSQPSQSSEPSQPQQKDPQQPAQQQQPAQQPKKPSPQP 327
Query: 373 YNPFILRQQVAPTPKGQLGT**TSNSTNVACSPRPSRNPCIRRLRPKSHDHXXXXXXXAF 194 +P +++ V +PK + N A P P + P I P Sbjct: 328 SSPRQVKRAVVVSPKEE----------NKAAEPPPPKIPKIETTHPPLPPAHPPPDRKPP 377
Query: 193 LA*RRADFKEP*IRGREHSNQVD-TGLPSQGLLPRRHPCSRGFSPPHPH 50 LA + + P VD T LP + P HP PP PH Sbjct: 378 LAAALGEAEPP--------GPVDATDLPKVQIPPPAHPAPVHQPPPLPH 418
>sp|Q5VYM1|CI131_HUMAN Uncharacterized protein C9orf131 OS=Homo sapiens GN=C9orf131 PE=2 SV=3 Length = 1079
Score = 32.7 bits (73), Expect = 1.7 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 11/49 (22%) Frame = -2
Query: 272 PKPQPLH*KTPSEVTRPQHCQHCN--------SFPCMKAS---GLQGAL 159 P+ QP + S++ P+HC+HC SFP +KAS GLQ L Sbjct: 1015 PQDQPEAGRRASDILTPRHCKHCPWAHMEKYLSFPTLKASLTRGLQKVL 1063
>sp|Q9Z2K1|K1C16_MOUSE Keratin, type I cytoskeletal 16 OS=Mus musculus GN=Krt16 PE=1 SV=3 Length = 469
Score = 32.3 bits (72), Expect = 2.2 Identities = 20/48 (41%), Positives = 24/48 (50%) Frame = +2
Query: 485 GVGGSGLLMWQMLSSLVAPSFLPCSVCRGSSVMVC*WSSGGRCSLGGG 628 G+GG +M S L S S C G SV +SSGG C +GGG Sbjct: 19 GIGGGSS---RMSSILAGGSCRAPSTCGGMSVTSSRFSSGGVCGIGGG 63
>sp|P84550|LBXCO_HUMAN Ladybird homeobox corepressor 1 OS=Homo sapiens GN=LBXCOR1 PE=1 SV=1 Length = 965
Score = 32.3 bits (72), Expect = 2.2 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +1
Query: 46 ANGGEVGKSLGYRGASGGEGPGWATQCLPG 135 ANGG G+ G G GG GPG + PG Sbjct: 290 ANGGSGGQGKGGAGGGGGGGPGCGAEMAPG 319
>sp|Q91660|GLI3_XENLA Zinc finger protein GLI3 OS=Xenopus laevis GN=gli3 PE=2 SV=1 Length = 1569
Score = 32.0 bits (71), Expect = 2.9 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 8/46 (17%) Frame = -3
Query: 118 LPSQGLLPRRHPCSRG---FSPPHPHL-----HDRASHSNPKTSLV 5 LP + P R+P S FSPPHP++ + R+ HS+P S++ Sbjct: 172 LPFFRISPHRNPASASDSPFSPPHPYISPYMDYIRSLHSSPSLSMI 217
>sp|Q5IS56|GLI3_PANTR Zinc finger protein GLI3 OS=Pan troglodytes GN=GLI3 PE=2 SV=1 Length = 1580
Score = 31.2 bits (69), Expect = 4.9 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 8/46 (17%) Frame = -3
Query: 118 LPSQGLLPRRHPCSRG---FSPPHPHLHD-----RASHSNPKTSLV 5 LP + P R+P + FSPPHP+++ R+ HS+P S++ Sbjct: 171 LPFIRISPHRNPAAASESPFSPPHPYINPYMDYIRSLHSSPSLSMI 216
>sp|P10071|GLI3_HUMAN Zinc finger protein GLI3 OS=Homo sapiens GN=GLI3 PE=1 SV=5 Length = 1580
Score = 31.2 bits (69), Expect = 4.9 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 8/46 (17%) Frame = -3
Query: 118 LPSQGLLPRRHPCSRG---FSPPHPHLHD-----RASHSNPKTSLV 5 LP + P R+P + FSPPHP+++ R+ HS+P S++ Sbjct: 171 LPFIRISPHRNPAAASESPFSPPHPYINPYMDYIRSLHSSPSLSMI 216
>sp|Q8WXX7|AUTS2_HUMAN Autism susceptibility gene 2 protein OS=Homo sapiens GN=AUTS2 PE=2 SV=1 Length = 1259
Score = 31.2 bits (69), Expect = 4.9 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 4/80 (5%) Frame = -2
Query: 422 PAASDERQPKKPFCNILQSLHSKAASRTNTQGTTRDVVDLELHKCCLLP----TPKPQPL 255 P+A QP + + SL+S ++SR++T T+ H P P PL Sbjct: 382 PSAQSLSQPLSAYNSSSLSLNSLSSSRSSTPAKTQPAPPHISHHPSASPFPLSLPNHSPL 441
Query: 254 H*KTPSEVTRPQHCQHCNSF 195 H TP+ + P H H N F Sbjct: 442 HSFTPT-LQPPAHSHHPNMF 460
>sp|P19622|HME2_HUMAN Homeobox protein engrailed-2 OS=Homo sapiens GN=EN2 PE=2 SV=3 Length = 333
Score = 31.2 bits (69), Expect = 4.9 Identities = 19/51 (37%), Positives = 22/51 (43%) Frame = +1
Query: 25 CCVRLCHANGGEVGKSLGYRGASGGEGPGWATQCLPGWSARVPVSKAP*SP 177 CC GG G G GA GG G G + Q L G +R P P +P Sbjct: 88 CCAGAGGGRGGGAGGEGGASGAEGGGGAGGSEQLL-GSGSREPRQNPPCAP 137
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q4T900 |
Definition |
tr|Q4T900|Q4T900_TETNG Chromosome 1 SCAF7673, whole genome shotgun sequence OS=Tetraodon nigroviridis |
Align length |
44 |
Score (bit) |
38.5 |
E-value |
0.35 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947950|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0002_A04, 5' (648 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q4T900|Q4T900_TETNG Chromosome 1 SCAF7673, whole genome shotg... 39 0.35 tr|A3MXB4|A3MXB4_PYRCJ Putative uncharacterized protein OS=Pyrob... 35 3.9 tr|Q39RB4|Q39RB4_GEOMG Nitroreductase OS=Geobacter metallireduce... 35 4.0 tr|B3NU30|B3NU30_DROER GG18707 (Fragment) OS=Drosophila erecta G... 35 5.1 tr|B7G6L2|B7G6L2_PHATR Predicted protein OS=Phaeodactylum tricor... 35 5.2 tr|Q4QIC5|Q4QIC5_LEIMA Putative uncharacterized protein OS=Leish... 35 5.2 tr|B2WJJ6|B2WJJ6_PYRTR Putative uncharacterized protein OS=Pyren... 35 5.2 tr|Q392G5|Q392G5_BURS3 Putative uncharacterized protein OS=Burkh... 34 6.7 tr|A2QVY5|A2QVY5_ASPNC Contig An11c0120, complete genome OS=Aspe... 34 6.7 tr|B2B690|B2B690_PODAN Predicted CDS Pa_2_7070 OS=Podospora anse... 34 6.7 tr|B2ASG2|B2ASG2_PODAN Predicted CDS Pa_1_23390 OS=Podospora ans... 34 6.7 tr|A1ZDJ0|A1ZDJ0_9SPHI Membrane protein, putative OS=Microscilla... 34 8.8 tr|B2WAU3|B2WAU3_PYRTR CHCH domain containing protein OS=Pyrenop... 34 8.8
>tr|Q4T900|Q4T900_TETNG Chromosome 1 SCAF7673, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00004986001 PE=4 SV=1 Length = 164
Score = 38.5 bits (88), Expect = 0.35 Identities = 18/44 (40%), Positives = 28/44 (63%) Frame = +2
Query: 458 LFSYMW*CVGVGGSGLLMWQMLSSLVAPSFLPCSVCRGSSVMVC 589 L +Y+W C G+GG GLLM ++ ++V + CS C S+M+C Sbjct: 12 LSTYIWYCGGLGGGGLLM--LVPAVVFITLGKCSCCWNESIMMC 53
>tr|A3MXB4|A3MXB4_PYRCJ Putative uncharacterized protein OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=Pcal_1864 PE=4 SV=1 Length = 626
Score = 35.0 bits (79), Expect = 3.9 Identities = 49/184 (26%), Positives = 67/184 (36%), Gaps = 14/184 (7%) Frame = -3
Query: 511 HEQPTPSNPHTSPHVGEQHDRTS*SKRHKIQQQVMNANPRSPSAIFYNPFILRQQVAPTP 332 H P P + H +PH+ H RT ++ H +Q+ + P P N L + P P Sbjct: 154 HVPPNPKHHHPTPHIAHPHGRTP-TRLHSRRQEAPHTLPPQP-----NTLRLPSRQNPKP 207
Query: 331 KGQLGT**TSNSTNVACSPRPSR----NPCIRRLRPKSHD----HXXXXXXXAFLA*RRA 176 + T + + P P R NP RR P H H + RRA Sbjct: 208 HKHIPQPHTPHKERL---PTPKRLEGDNP--RRAAPLHHQRVPHHLYPRLRVGHVLLRRA 262
Query: 175 ---DFKEP*IRGREHSNQVDTGLPSQG-LLPRRHPCSRGFSPPHPH--LHDRASHSNPKT 14 FK +R P Q PRR P PPHP +H SNP Sbjct: 263 GGTSFKHREVR------------PVQAQAAPRRLP----HHPPHPQRLVHAEDPLSNPPQ 306
Query: 13 SLVI 2 +L++ Sbjct: 307 NLLL 310
>tr|Q39RB4|Q39RB4_GEOMG Nitroreductase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=Gmet_2995 PE=4 SV=1 Length = 271
Score = 35.0 bits (79), Expect = 4.0 Identities = 30/123 (24%), Positives = 43/123 (34%), Gaps = 30/123 (24%) Frame = -1
Query: 306 PRTPQMLLAPHAQAATLALEDSVRSHTTTALP---------------------ALQQLSL 190 P P+ L P A L + S+R T A+P A++ L + Sbjct: 70 PPPPEAPLPPEILDAYLRMRRSIRRFRTEAVPRKTIESLLDVVRYAPTSSNRQAVRWLVI 129
Query: 189 HEGERTSRSL---------RYGDASTPTR*TLGCPARAFSPGGTPVAEAFPHLTPICMTE 37 H+ R R D S P R TL R+++ G P+ PHL C Sbjct: 130 HDTAEVRRLTGLVIDWFRSRLADPSCPNRTTLAAMIRSWNNGSDPICRNAPHLVIPCTPR 189
Query: 36 PHT 28 H+ Sbjct: 190 QHS 192
>tr|B3NU30|B3NU30_DROER GG18707 (Fragment) OS=Drosophila erecta GN=GG18707 PE=4 SV=1 Length = 523
Score = 34.7 bits (78), Expect = 5.1 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = -3
Query: 589 ADHNTRTSTHRARQEGGCH**AEHLPHEQPTPSNPHTSPHVGEQHDRTS 443 A H+ T H Q+ H +H H+QP S+PH H+ H T+ Sbjct: 472 AQHHHHTQAHHQHQQHQSHHQQQH--HQQPAQSHPHHQTHLHSHHGATT 518
>tr|B7G6L2|B7G6L2_PHATR Predicted protein OS=Phaeodactylum tricornutum CCAP 1055/1 GN=PHATRDRAFT_48282 PE=4 SV=1 Length = 1567
Score = 34.7 bits (78), Expect = 5.2 Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 6/138 (4%) Frame = -1
Query: 405 TPTQEALLQYFTIPSF*GSKSHQHPRDNSGRSRP-RTPQMLLAPHAQAATLALEDSVRSH 229 +P+ L F++PS S+S R + + P +P + L+ A+ L + S Sbjct: 1140 SPSLTPSLFPFSLPSTTPSRSPAFERSPTPSTTPSNSPSLQLSEEPSASPLVAQSRSPST 1199
Query: 228 TTTALPALQ-QLSLHEGERTSRSLRYGDASTPTR*TLGCPARAFS--PGGTPVAE--AFP 64 + P+ + + S+ E S + YG S P+ PAR S P TP + A P Sbjct: 1200 VPSLSPSSRPESSIRPSEGPSSTPSYGPVSPPSTTPSRSPAREPSRVPSTTPSSSPSALP 1259
Query: 63 HLTPICMTEPHTATLKQA 10 T I P TAT +A Sbjct: 1260 STTQITTGVPTTATPGEA 1277
>tr|Q4QIC5|Q4QIC5_LEIMA Putative uncharacterized protein OS=Leishmania major GN=LmjF08.0440 PE=4 SV=1 Length = 2434
Score = 34.7 bits (78), Expect = 5.2 Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 6/93 (6%) Frame = -1
Query: 315 RSRPRTPQMLLAPHAQAATLALEDSVRSHTT--TALPALQQLSL---HEGERTSRSLRYG 151 RS PR ++L TLA E +V S + T++P L + + + T + G Sbjct: 1445 RSEPRAAEVL---RRVLLTLARESAVGSSSAAGTSVPVLSRSGMSVAYVKALTVPAASLG 1501
Query: 150 DASTPTR*TLGCPARAFSPGGTP-VAEAFPHLT 55 D STPT T P A GGTP V A LT Sbjct: 1502 DLSTPTMLTTSDPTTAADGGGTPEVVAALKELT 1534
>tr|B2WJJ6|B2WJJ6_PYRTR Putative uncharacterized protein OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=PTRG_10342 PE=4 SV=1 Length = 284
Score = 34.7 bits (78), Expect = 5.2 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = -1
Query: 333 PRDNSGRSRPRTPQMLLAPHAQAATLALEDSVRSHTTTALPALQQLSLHEGERTS 169 P DNS +P P L PH QA+ + + TT+ L+LHEG +++ Sbjct: 164 PEDNSSPKQPDRPMRLDIPHPQASRFDSQQDISGSTTSNTTVF--LALHEGPKSA 216
>tr|Q392G5|Q392G5_BURS3 Putative uncharacterized protein OS=Burkholderia sp. (strain 383) GN=Bcep18194_B2540 PE=4 SV=1 Length = 233
Score = 34.3 bits (77), Expect = 6.7 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = +2
Query: 242 ESSNARVAAWAWGASNICGVRGLLRPELSLGCWCDLLP*NEGIV 373 ++S + WA G+ +CG+ L +LSLG LLP N G+V Sbjct: 114 DASTQLIPQWAGGSLQLCGIAFQLFAKLSLGRSFGLLPANRGVV 157
>tr|A2QVY5|A2QVY5_ASPNC Contig An11c0120, complete genome OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=An11g03070 PE=4 SV=1 Length = 457
Score = 34.3 bits (77), Expect = 6.7 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = +3
Query: 468 TCGDVWGLEGVGCSCGRCSAH--*WHPPSCLARCVEVRVLWSANGH 599 +C W EG+ C CG C+ H PP ++R LW +GH Sbjct: 95 SCTTAWTREGLICVCGHCNPHHDSARPPLSSRDRAKMRKLWKDSGH 140
>tr|B2B690|B2B690_PODAN Predicted CDS Pa_2_7070 OS=Podospora anserina PE=4 SV=1 Length = 317
Score = 34.3 bits (77), Expect = 6.7 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 1/104 (0%) Frame = -1
Query: 327 DNSGRSRPRTPQMLLAPHAQAATL-ALEDSVRSHTTTALPALQQLSLHEGERTSRSLRYG 151 D S + P L+P + +L +L++S R + LP+L LSL E E +R L Sbjct: 122 DFSSPTSPSLSPPALSPSSSPTSLPSLDESPRPSSRPELPSLITLSLPENETATRPLSVH 181
Query: 150 DASTPTR*TLGCPARAFSPGGTPVAEAFPHLTPICMTEPHTATL 19 A + T LG R++ P L+P E H L Sbjct: 182 SARSGTGSALGSRPRSYKRIDRPTI-----LSPTATAELHALLL 220
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