DK947833 |
Clone id |
YMU02A01NGRM0001_E08 |
Library |
YMU02 |
Length |
609 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRM0001_E08. 5' end sequence. |
Accession |
DK947833 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
- |
Sequence |
AAATTCGAGTTGAATTTGGTGATTGAGAGAAGAGATTGCTAGCTCAAGAGTGCGTCTTCG ATACACTGTTCATCACTAATCCCTTTCCTTCTTCTCTCTCTCTCTCTGAGTGCTTGCTGC CATGGCGTCTACCGAGGTTGCCCCCCTCTCTGCGGAAAAGAAAGGCAAGAAGACTACTAC TCCGAAGAAGGCCAAGCCTCCTGCTGCCAAGAAGCCCAAGACGGAGCCGCTTCATCCCAG CTACTTCCAGATGATCAGTGAAGCTATTTTGGCATTGAAGGAGAGAACCGGCTCAAGCCA GATCGCCATAACCAAGTTCATCGAGGCCAAGTACAAGAGTGTTCTGCCTGCAAACTTTAA GAAACTACTGCTAGTGCAGCTGAGGAATCTTGTGAAGCAGAACAAGCTAGTGAAGGTCAA GGGGTCTTATAAGCTCTCACCAGAAGTGAAGAAGCAGGTAGCGCCCAAGAAGTTAAGGTC AAAGAAGGCGACATACGAGGGAGAGACGAAGAAGGCAGCCCCTAAGAAAGCGACCACTGC AAAGAAGGTGCCGCCGAAGAAGCCCAAGTCGCCCAAGAAGGCAGCGCCCAAAGCCGCTAA ACCTGTTGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P27806 |
Definition |
sp|P27806|H1_WHEAT Histone H1 OS=Triticum aestivum |
Align length |
85 |
Score (bit) |
82.0 |
E-value |
2.0e-15 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947833|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRM0001_E08, 5' (609 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P27806|H1_WHEAT Histone H1 OS=Triticum aestivum PE=2 SV=2 82 2e-15 sp|P37218|H1_SOLLC Histone H1 OS=Solanum lycopersicum PE=3 SV=1 79 2e-14 sp|P23444|H1_MAIZE Histone H1 OS=Zea mays PE=2 SV=2 76 1e-13 sp|P40267|H1_SOLPN Histone H1 OS=Solanum pennellii PE=2 SV=1 75 3e-13 sp|P08283|H1_PEA Histone H1 OS=Pisum sativum PE=2 SV=1 74 8e-13 sp|Q9M5W4|H1_EUPES Histone H1 OS=Euphorbia esula PE=2 SV=1 72 2e-12 sp|P26569|H12_ARATH Histone H1.2 OS=Arabidopsis thaliana GN=At2g... 71 5e-12 sp|P26568|H11_ARATH Histone H1.1 OS=Arabidopsis thaliana GN=At1g... 69 2e-11 sp|Q08865|H12_VOLCA Histone H1-II OS=Volvox carteri GN=H1-II PE=... 61 4e-09 sp|Q08864|H11_VOLCA Histone H1-I OS=Volvox carteri GN=H1-I PE=2 ... 60 7e-09 sp|P54671|H1_DICDI Histone H1 OS=Dictyostelium discoideum GN=H1 ... 59 3e-08 sp|Q9UV33|H1_ASCIM Histone H1 OS=Ascobolus immersus PE=3 SV=1 52 3e-06 sp|P40278|H1E_CHITE Histone H1E OS=Chironomus tentans PE=3 SV=1 50 9e-06 sp|P40262|H1E_CHIPA Histone H1E OS=Chironomus pallidivittatus PE... 50 9e-06 sp|P40263|H11_GLYBA Histone H1-I OS=Glyptotendipes barbipes PE=3... 49 2e-05 sp|Q07134|H1O_CHITH Histone H1, orphon OS=Chironomus thummi thum... 48 4e-05 sp|P40266|H11_GLYSA Histone H1-I OS=Glyptotendipes salinus PE=3 ... 47 1e-04 sp|P02255|H1_DROME Histone H1 OS=Drosophila melanogaster GN=His1... 45 3e-04 sp|P17268|H1_DROHY Histone H1 OS=Drosophila hydei GN=His1 PE=3 SV=2 45 3e-04 sp|P06894|H1A_PLADU Histone H1A, sperm OS=Platynereis dumerilii ... 45 3e-04 sp|Q94972|H13_DROVI Histone H1.3 OS=Drosophila virilis GN=His1.3... 45 3e-04 sp|O01833|H15_CAEEL Histone H1.5 OS=Caenorhabditis elegans GN=hi... 45 4e-04 sp|O16277|H16_CAEEL Putative histone H1.6 OS=Caenorhabditis eleg... 44 5e-04 sp|Q94555|H12_DROVI Histone H1.2 OS=Drosophila virilis GN=His1.2... 44 5e-04 sp|P15796|H12_CAEEL Histone H1.2 OS=Caenorhabditis elegans GN=hi... 44 5e-04 sp|Q8J0U2|H1_NEUCR Histone H1 OS=Neurospora crassa GN=hh1 PE=3 SV=1 44 8e-04 sp|Q24704|H11_DROVI Histone H1.1 OS=Drosophila virilis GN=His1.1... 44 8e-04 sp|P82898|H1A_OLILU Histone H1A (Fragment) OS=Olisthodiscus lute... 43 0.001 sp|P35060|H1_TIGCA Histone H1 OS=Tigriopus californicus PE=3 SV=1 42 0.002 sp|P21895|H1_CHITH Histone H1 OS=Chironomus thummi thummi PE=3 SV=1 42 0.002
>sp|P27806|H1_WHEAT Histone H1 OS=Triticum aestivum PE=2 SV=2 Length = 238
Score = 82.0 bits (201), Expect = 2e-15 Identities = 45/85 (52%), Positives = 56/85 (65%) Frame = +2
Query: 233 HPSYFQMISEAILALKERTGSSQIAITKFIEAKYKSVLPANFKKLLLVQLRXXXXXXXXX 412 HPSY +M+SEAI ALKER+GSS IAI KFIE K+K+ LPANF+K+LL Q++ Sbjct: 55 HPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLT 114
Query: 413 XXXGSYKLSPEVKKQVAPKKLRSKK 487 GSYKL+ + V PK KK Sbjct: 115 KVKGSYKLA-KAPAAVKPKTATKKK 138
>sp|P37218|H1_SOLLC Histone H1 OS=Solanum lycopersicum PE=3 SV=1 Length = 287
Score = 79.0 bits (193), Expect = 2e-14 Identities = 46/86 (53%), Positives = 52/86 (60%) Frame = +2
Query: 233 HPSYFQMISEAILALKERTGSSQIAITKFIEAKYKSVLPANFKKLLLVQLRXXXXXXXXX 412 HP YF+MI +AI+ LKERTGSSQ AITKFIE K KS LP+NFKKLLL QL+ Sbjct: 56 HPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKS-LPSNFKKLLLTQLKKFVASEKLV 114
Query: 413 XXXGSYKLSPEVKKQVAPKKLRSKKA 490 SYKL K A + K A Sbjct: 115 KVKNSYKLPSGSKPAAAAVPAKKKPA 140
>sp|P23444|H1_MAIZE Histone H1 OS=Zea mays PE=2 SV=2 Length = 246
Score = 76.3 bits (186), Expect = 1e-13 Identities = 43/84 (51%), Positives = 52/84 (61%), Gaps = 4/84 (4%) Frame = +2
Query: 233 HPSYFQMISEAILALKERTGSSQIAITKFIEAKYKSVLPANFKKLLLVQLRXXXXXXXXX 412 H Y +M+SEAI +LKERTGSS AI KF+E K+K+ LP NF+KLL VQL+ Sbjct: 50 HLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLT 109
Query: 413 XXXGSYKLS----PEVKKQVAPKK 472 SYKLS P K + APKK Sbjct: 110 KVKNSYKLSSATKPNPKPKAAPKK 133
>sp|P40267|H1_SOLPN Histone H1 OS=Solanum pennellii PE=2 SV=1 Length = 202
Score = 74.7 bits (182), Expect = 3e-13 Identities = 39/84 (46%), Positives = 50/84 (59%) Frame = +2
Query: 233 HPSYFQMISEAILALKERTGSSQIAITKFIEAKYKSVLPANFKKLLLVQLRXXXXXXXXX 412 HP YFQMI EA+LAL E+ GSS A+ K++E K+K LPANF+K+L +QL+ Sbjct: 49 HPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLI 108
Query: 413 XXXGSYKLSPEVKKQVAPKKLRSK 484 SYKLS KK+ K K Sbjct: 109 KIKASYKLSEAGKKETTTKTSTKK 132
>sp|P08283|H1_PEA Histone H1 OS=Pisum sativum PE=2 SV=1 Length = 265
Score = 73.6 bits (179), Expect = 8e-13 Identities = 41/79 (51%), Positives = 49/79 (62%) Frame = +2
Query: 233 HPSYFQMISEAILALKERTGSSQIAITKFIEAKYKSVLPANFKKLLLVQLRXXXXXXXXX 412 HP+Y +MI +AI++LKE+ GSSQ AI KFIE K K LPANFKKLLL L+ Sbjct: 62 HPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQ-LPANFKKLLLQNLKKNVASGKLI 120
Query: 413 XXXGSYKLSPEVKKQVAPK 469 GS+KLS KK K Sbjct: 121 KVKGSFKLSAAAKKPAVAK 139
>sp|Q9M5W4|H1_EUPES Histone H1 OS=Euphorbia esula PE=2 SV=1 Length = 229
Score = 72.4 bits (176), Expect = 2e-12 Identities = 42/87 (48%), Positives = 53/87 (60%) Frame = +2
Query: 233 HPSYFQMISEAILALKERTGSSQIAITKFIEAKYKSVLPANFKKLLLVQLRXXXXXXXXX 412 HPS+F+MIS+AI LKERTGSSQ AI KF+E K+K LP+NF+KLLL L+ Sbjct: 51 HPSFFEMISDAISTLKERTGSSQYAINKFVEDKHKQ-LPSNFRKLLLFHLKKLVASGKLV 109
Query: 413 XXXGSYKLSPEVKKQVAPKKLRSKKAT 493 S+KL + AP +KK T Sbjct: 110 KVKNSFKLP---SARAAPAPALAKKPT 133
>sp|P26569|H12_ARATH Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=2 SV=1 Length = 273
Score = 70.9 bits (172), Expect = 5e-12 Identities = 43/89 (48%), Positives = 53/89 (59%), Gaps = 2/89 (2%) Frame = +2
Query: 233 HPSYFQMISEAILALKERTGSSQIAITKFIEAKYKSVLPANFKKLLLVQLRXXXXXXXXX 412 HP+Y +MI +AI+ LKERTGSSQ AI KFIE K+KS LP F+KLLLV L+ Sbjct: 62 HPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKS-LPPTFRKLLLVNLKRLVASEKLV 120
Query: 413 XXXGSYKLSPEVKKQVAPKKLR--SKKAT 493 S+K+ P + PK KKAT Sbjct: 121 KVKASFKI-PSARSAATPKPAAPVKKKAT 148
>sp|P26568|H11_ARATH Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1 Length = 274
Score = 68.9 bits (167), Expect = 2e-11 Identities = 40/86 (46%), Positives = 49/86 (56%) Frame = +2
Query: 233 HPSYFQMISEAILALKERTGSSQIAITKFIEAKYKSVLPANFKKLLLVQLRXXXXXXXXX 412 HP+Y +MI +AI+ LKERTGSSQ AI KFIE K K LP F+KLLL+ L+ Sbjct: 62 HPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKE-LPPTFRKLLLLNLKRLVASGKLV 120
Query: 413 XXXGSYKLSPEVKKQVAPKKLRSKKA 490 S+KL K +PK K A Sbjct: 121 KVKASFKLPSASAKASSPKAAAEKSA 146
>sp|Q08865|H12_VOLCA Histone H1-II OS=Volvox carteri GN=H1-II PE=2 SV=3 Length = 241
Score = 61.2 bits (147), Expect = 4e-09 Identities = 40/90 (44%), Positives = 48/90 (53%), Gaps = 4/90 (4%) Frame = +2
Query: 233 HPSYFQMISEAILALKERTGSSQIAITKFIEAKY-KSVLPANFKKLLLVQLRXXXXXXXX 409 HP Y QM+++AIL+LKER GSS A+ KFIEAKY K + F K L + L+ Sbjct: 25 HPPYIQMVTDAILSLKERDGSSLPALKKFIEAKYGKDIHDKKFPKTLSLALKTFVKNGKL 84
Query: 410 XXXXGSYKLSPEVK---KQVAPKKLRSKKA 490 SYKLS K K A K KKA Sbjct: 85 VKVKNSYKLSDAQKSKAKAAAKPKAAPKKA 114
>sp|Q08864|H11_VOLCA Histone H1-I OS=Volvox carteri GN=H1-I PE=2 SV=3 Length = 261
Score = 60.5 bits (145), Expect = 7e-09 Identities = 38/92 (41%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Frame = +2
Query: 233 HPSYFQMISEAILALKERTGSSQIAITKFIEAKY-KSVLPANFKKLLLVQLRXXXXXXXX 409 HP Y +M+ +AI LKER GSS A+ KFIE KY K + NF K L ++ Sbjct: 59 HPPYIEMVKDAITTLKERNGSSLPALKKFIENKYGKDIHDKNFAKTLSQVVKTFVKGGKL 118
Query: 410 XXXXGSYKLSPEVKKQVAPKKLRSKKATYEGE 505 GS+KLS +K + KK KKA +GE Sbjct: 119 VKVKGSFKLSEALKAKA--KKSTPKKAKADGE 148
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9ST40 |
Definition |
tr|Q9ST40|Q9ST40_LILLO Variant of histone H1 OS=Lilium longiflorum |
Align length |
88 |
Score (bit) |
95.1 |
E-value |
3.0e-18 |
Report |
|