DK947825 |
Clone id |
YMU02A01NGRM0001_D11 |
Library |
YMU02 |
Length |
559 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRM0001_D11. 5' end sequence. |
Accession |
DK947825 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL330Contig1 |
Sequence |
GCAGACGCTGGTTTCTCGTCTTCACTCAGGTAAGCTAGCAGCTTAGTACCTACATTGCCT GCAGAGAGAAGCTGAGGATGGCAGTCTCCAAGAAGATGGTCCTCGGACTTATGCTCTTGG CCCTTCTGGCCGTCACGTGCGTGCCATCTGCCAAGGCCATCCGTGGACTTGGTGTTGTGG ACTATACCCCTAGCCAGTCTCAAATGGAGGTTGGAGACCTTTCCTTGGATGCCCAACAGG AGGTCTTGCGCCTGCAGGAGGATATGGATGCTGTCAAGCGCCACCTTCTTTCCTATGATC CCTACTACACTAAATGGTACGGTGGAAAGAACTAGAGTTTCCCGCTTGCCCCCTTCTTTC ATCCGCCTCCCGCCCTTCATAATGTGGCTGTATTAGCGATTAGGTTTGTGCTTTTATTTT ACCATTGGCCTCCATTTTCCTCTTTATTCCAATTCCAATGTACCTATGTAGCCCCGCAGG TTGTCCATGATTTTATCTTTTGTACCTCCTATTGGTATGCTATGGCATTGTTTTTGAACC TGGAATCTCATGACGCTTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P09241 |
Definition |
sp|P09241|OPSD_OCTDO Rhodopsin OS=Octopus dofleini |
Align length |
74 |
Score (bit) |
35.4 |
E-value |
0.19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947825|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRM0001_D11, 5' (559 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P09241|OPSD_OCTDO Rhodopsin OS=Octopus dofleini GN=RHO PE=2 SV=1 35 0.19 sp|O16005|OPSD_SEPOF Rhodopsin OS=Sepia officinalis GN=RHO PE=2 ... 33 0.96 sp|Q8LCL8|U647B_ARATH UPF0467 protein B OS=Arabidopsis thaliana ... 33 1.2 sp|A5CXG4|NUOH_VESOH NADH-quinone oxidoreductase subunit H OS=Ve... 32 2.8 sp|O94620|CWF17_SCHPO Cell cycle control protein cwf17 OS=Schizo... 31 3.6 sp|Q14699|RFTN1_HUMAN Raftlin OS=Homo sapiens GN=RFTN1 PE=1 SV=4 31 4.7 sp|Q8S8M0|U647A_ARATH UPF0467 protein At2g41420 OS=Arabidopsis t... 31 4.7 sp|P39770|SALM_DROME Homeotic protein spalt-major OS=Drosophila ... 31 4.7 sp|Q8IN94|OSA_DROME Trithorax group protein osa OS=Drosophila me... 31 4.7 sp|A1AVR9|NUOH_RUTMC NADH-quinone oxidoreductase subunit H OS=Ru... 31 4.7 sp|Q2GQ93|DHH1_CHAGB ATP-dependent RNA helicase DHH1 OS=Chaetomi... 31 4.7 sp|P47749|PAR1_XENLA Proteinase-activated receptor 1 OS=Xenopus ... 30 6.2 sp|Q6BH13|MCA1_DEBHA Metacaspase-1 OS=Debaryomyces hansenii GN=M... 30 6.2 sp|Q0CJU8|HSE1_ASPTN Class E vacuolar protein-sorting machinery ... 30 6.2 sp|Q9UKP4|ATS7_HUMAN A disintegrin and metalloproteinase with th... 30 8.0 sp|Q9UPR6|ZFR2_HUMAN Zinc finger RNA-binding protein 2 OS=Homo s... 30 8.1 sp|P31356|OPSD_TODPA Rhodopsin OS=Todarodes pacificus GN=RHO PE=... 30 8.1 sp|P08194|GLPT_ECOLI Glycerol-3-phosphate transporter OS=Escheri... 30 8.1
>sp|P09241|OPSD_OCTDO Rhodopsin OS=Octopus dofleini GN=RHO PE=2 SV=1 Length = 455
Score = 35.4 bits (80), Expect = 0.19 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = -2
Query: 366 ADERRGQAGNSSSFHRTI*CSRDHRKEGGA*QHPYPPAGARPPVGHPRKGLQPPFETG*G 187 A ER G++ +++ + + + + A Q P PP G PP G+P +G PP + G Sbjct: 357 ASERGGESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY-PPQGYPPQGAYPPPQ---G 412
Query: 186 YSPQ-HQVHGWPWQ 148 Y PQ + G+P Q Sbjct: 413 YPPQGYPPQGYPPQ 426
>sp|O16005|OPSD_SEPOF Rhodopsin OS=Sepia officinalis GN=RHO PE=2 SV=1 Length = 464
Score = 33.1 bits (74), Expect = 0.96 Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = -2
Query: 273 QHPYPPAGARPPV-GHPRKGLQPPFETG*GYSPQ 175 Q YPP GA PP G+P +G PP G GY PQ Sbjct: 384 QAAYPPQGAYPPQGGYPPQGYPPPPAQG-GYPPQ 416
>sp|Q8LCL8|U647B_ARATH UPF0467 protein B OS=Arabidopsis thaliana PE=3 SV=1 Length = 101
Score = 32.7 bits (73), Expect = 1.2 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = -2
Query: 267 PYPPAGARPPVGHPRKGLQPPFETG*GYSPQ-HQVHGWPWQ 148 PYP G PP G+P++G P GY PQ + G+P Q Sbjct: 32 PYPQQGYPPPQGYPQQGYPPQ-----GYPPQGYPEQGYPQQ 67
>sp|A5CXG4|NUOH_VESOH NADH-quinone oxidoreductase subunit H OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=nuoH PE=3 SV=1 Length = 357
Score = 31.6 bits (70), Expect = 2.8 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Frame = +1
Query: 178 WTIPLASLKWRLETFPWMPNRRSCACRRIWMLSSATFFPMIPTTLNGTVERTRVSRLPPS 357 W P ++ + F W+P IW+L+ TFF + + T R R ++ Sbjct: 277 WHSPFEAIPYLESVFSWIPGM-------IWLLAKTTFFMFLYLWVRATFPRFRYDQIMHL 329
Query: 358 F--IRLPPFIMWLY 393 + LP I+W++ Sbjct: 330 SWKVFLPITIIWIF 343
>sp|O94620|CWF17_SCHPO Cell cycle control protein cwf17 OS=Schizosaccharomyces pombe GN=cwf17 PE=1 SV=1 Length = 340
Score = 31.2 bits (69), Expect = 3.6 Identities = 21/75 (28%), Positives = 37/75 (49%) Frame = -3
Query: 242 LLLGIQGKVSNLHLRLARGIVHNTKSTDGLGRWHARDGQKGQEHKSEDHLLGDCHPQLLS 63 +L G +G +++L +V+ + S L W A GQK ++HK ++ L Sbjct: 88 VLNGCKGAITDLQWSRDSRVVYCSSSDTHLMSWDAVSGQKIRKHKGHAGVV-----NALD 142
Query: 62 AGNVGTKLLAYLSED 18 VG++LL +S+D Sbjct: 143 VLKVGSELLTSVSDD 157
>sp|Q14699|RFTN1_HUMAN Raftlin OS=Homo sapiens GN=RFTN1 PE=1 SV=4 Length = 578
Score = 30.8 bits (68), Expect = 4.7 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 7/90 (7%) Frame = -3
Query: 263 ILLQAQDLLLGIQGKVSNLHLRLARGIVHNTKSTDGLGRWHARDGQKGQEHKS--EDHL- 93 + LQ L I+ K S R +R +HN + G+ ARD Q+ +E++ ED Sbjct: 427 VFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSS 486
Query: 92 ----LGDCHPQLLSAGNVGTKLLAYLSEDE 15 +G+C G V ++ + ED+ Sbjct: 487 KAGDMGNCVSGQQQEGGVSEEMKGPVQEDK 516
>sp|Q8S8M0|U647A_ARATH UPF0467 protein At2g41420 OS=Arabidopsis thaliana GN=At2g41420 PE=2 SV=1 Length = 98
Score = 30.8 bits (68), Expect = 4.7 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -2
Query: 273 QHPYPPAGARPPVGHPRKGLQPPFETG*GYSPQHQ 169 Q YPP G P G+P++G PP+ PQHQ Sbjct: 39 QQGYPPQGY-PQQGYPQQGYPPPYAPQYPPPPQHQ 72
Score = 30.0 bits (66), Expect = 8.1 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = -2
Query: 273 QHPYPPAGARPPVGHPRKGLQPPFETG*GYSPQHQVHGWPWQ 148 Q+ PP G PP G+P +G GY PQ G+P Q Sbjct: 3 QYNQPPVGVPPPQGYPPEGYPKDAYPPQGYPPQ----GYPQQ 40
>sp|P39770|SALM_DROME Homeotic protein spalt-major OS=Drosophila melanogaster GN=salm PE=1 SV=3 Length = 1365
Score = 30.8 bits (68), Expect = 4.7 Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Frame = -2
Query: 306 SRDHRKEGG--A*QHPYPPAGARPPVG-HPRKGLQPPFET 196 +RD R+EGG A P P GARPP G P L PP T Sbjct: 1218 ARDQRQEGGPGAGPPPNPLMGARPPFGMFPNLPLFPPATT 1257
>sp|Q8IN94|OSA_DROME Trithorax group protein osa OS=Drosophila melanogaster GN=osa PE=1 SV=1 Length = 2716
Score = 30.8 bits (68), Expect = 4.7 Identities = 24/77 (31%), Positives = 32/77 (41%) Frame = -2
Query: 297 HRKEGGA*QHPYPPAGARPPVGHPRKGLQPPFETG*GYSPQHQVHGWPWQMART*RPEGP 118 H+++ QHP P P ++G QPP G G P Q HG P Q+ P P Sbjct: 1277 HQQQHPQHQHPGLPGPPPPQQQQGQQGQQPPPSVGGGPPPAPQQHG-PGQV-----PPSP 1330
Query: 117 RA*VRGPSSWRLPSSAS 67 + VR + P S Sbjct: 1331 QQHVRPAAGAPYPPGGS 1347
>sp|A1AVR9|NUOH_RUTMC NADH-quinone oxidoreductase subunit H OS=Ruthia magnifica subsp. Calyptogena magnifica GN=nuoH PE=3 SV=1 Length = 357
Score = 30.8 bits (68), Expect = 4.7 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Frame = +1
Query: 178 WTIPLASLKWRLETFPWMPNRRSCACRRIWMLSSATFFPMIPTTLNGTVERTRVSRLPPS 357 W P ++ + F W+P IW+L+ TFF + + T R R ++ Sbjct: 277 WHSPFEAIPYLESAFSWVPGI-------IWLLAKTTFFMFLYLWVRATFPRFRYDQIMRL 329
Query: 358 F--IRLPPFIMWLY 393 + LP I+W++ Sbjct: 330 SWKVFLPITIIWIF 343
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A2EVN2 |
Definition |
tr|A2EVN2|A2EVN2_TRIVA XYPPX repeat family protein OS=Trichomonas vaginalis G3 |
Align length |
56 |
Score (bit) |
36.6 |
E-value |
0.95 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947825|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRM0001_D11, 5' (559 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A2EVN2|A2EVN2_TRIVA XYPPX repeat family protein OS=Trichomona... 37 0.95 tr|B6MXU8|B6MXU8_BRAFL Putative uncharacterized protein OS=Branc... 36 1.6 tr|Q39115|Q39115_ARATH GPRP protein (Putative uncharacterized pr... 35 2.1 tr|Q6QE96|Q6QE96_9MOLL Rhodopsin (Fragment) OS=Octopus bimaculoi... 35 2.1 tr|A2DBY2|A2DBY2_TRIVA XYPPX repeat family protein OS=Trichomona... 35 2.1 tr|A3MU76|A3MU76_PYRCJ Chromosome segregation ATPase-like protei... 35 2.1 tr|B4VLJ5|B4VLJ5_9CYAN Putative uncharacterized protein OS=Micro... 35 2.8 tr|B8C761|B8C761_THAPS Predicted protein OS=Thalassiosira pseudo... 35 2.8 tr|Q3BDN3|Q3BDN3_9MOLL Rhodopsin (Fragment) OS=Octopus ornatus P... 35 2.8 tr|Q0RQ37|Q0RQ37_FRAAA Putative uncharacterized protein OS=Frank... 35 3.6 tr|B6Q7Z7|B6Q7Z7_PENMA Annexin ANXC3.2 OS=Penicillium marneffei ... 35 3.6 tr|A1D4S9|A1D4S9_NEOFI Putative uncharacterized protein OS=Neosa... 35 3.6 tr|A4FJP6|A4FJP6_SACEN Putative uncharacterized protein OS=Sacch... 33 7.9 tr|B6T2F1|B6T2F1_MAIZE Rhodopsin OS=Zea mays PE=4 SV=1 33 8.1 tr|B6SHT2|B6SHT2_MAIZE Rhodopsin OS=Zea mays PE=4 SV=1 33 8.1 tr|A5BDW1|A5BDW1_VITVI Putative uncharacterized protein OS=Vitis... 33 8.1 tr|Q6QEA1|Q6QEA1_9MOLL Rhodopsin (Fragment) OS=Tremoctopus viola... 33 8.1 tr|Q6QE83|Q6QE83_9MOLL Rhodopsin (Fragment) OS=Sthenoteuthis oua... 33 8.1 tr|B8M3T5|B8M3T5_9EURO Putative uncharacterized protein OS=Talar... 33 8.1
>tr|A2EVN2|A2EVN2_TRIVA XYPPX repeat family protein OS=Trichomonas vaginalis G3 GN=TVAG_193820 PE=4 SV=1 Length = 231
Score = 36.6 bits (83), Expect = 0.95 Identities = 22/56 (39%), Positives = 26/56 (46%) Frame = -2
Query: 285 GGA*QHPYPPAGARPPVGHPRKGLQPPFETG*GYSPQHQVHGWPWQMART*RPEGP 118 GG Q YPP G PP G+P+ G P GY PQ G+P Q +P P Sbjct: 141 GGYPQAGYPPQGGYPPQGYPQAGYPPQGYPQPGYPPQ---QGYPPQPGYPPQPGYP 193
>tr|B6MXU8|B6MXU8_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_88113 PE=4 SV=1 Length = 222
Score = 35.8 bits (81), Expect = 1.6 Identities = 16/24 (66%), Positives = 17/24 (70%) Frame = -2
Query: 273 QHPYPPAGARPPVGHPRKGLQPPF 202 Q PYPPAGA PP G P G QPP+ Sbjct: 158 QPPYPPAGAPPPTGTPPPG-QPPY 180
>tr|Q39115|Q39115_ARATH GPRP protein (Putative uncharacterized protein) (AT5g45350/MFC19_1) (Genomic DNA, chromosome 5, P1 clone:MFC19) OS=Arabidopsis thaliana GN=GPRP PE=2 SV=1 Length = 177
Score = 35.4 bits (80), Expect = 2.1 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%) Frame = -2
Query: 300 DHRKEGGA*QHP---YPPAGARPPVGHPRKGLQPP 205 D+ K+ G +P YPP GA PP G+P++G PP Sbjct: 6 DNDKDKGFHGYPPAGYPPPGAYPPAGYPQQGYPPP 40
>tr|Q6QE96|Q6QE96_9MOLL Rhodopsin (Fragment) OS=Octopus bimaculoides PE=4 SV=1 Length = 294
Score = 35.4 bits (80), Expect = 2.1 Identities = 20/41 (48%), Positives = 23/41 (56%) Frame = -2
Query: 264 YPPAGARPPVGHPRKGLQPPFETG*GYSPQHQVHGWPWQMA 142 YPP GA PP G+P +G PP GY PQ G+P Q A Sbjct: 260 YPPQGAYPPQGYPPQGAYPPQ----GYPPQ----GYPPQGA 292
>tr|A2DBY2|A2DBY2_TRIVA XYPPX repeat family protein OS=Trichomonas vaginalis G3 GN=TVAG_456580 PE=4 SV=1 Length = 383
Score = 35.4 bits (80), Expect = 2.1 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = -2
Query: 267 PYPPAGARPPVGHPRKGLQPPFETG*GYSPQ--HQVHGWPWQ 148 PYPP G PP G+P +G PP GY PQ + G+P Q Sbjct: 146 PYPPQGGYPPQGYPPQGGYPPQ----GYPPQGAYPPQGYPPQ 183
Score = 35.0 bits (79), Expect = 2.8 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = -2
Query: 288 EGGA*QHPYPPAGARPPVGHPRKGLQPPFETG*GYSPQ 175 +GG YPP G PP G+P +G PP GY PQ Sbjct: 150 QGGYPPQGYPPQGGYPPQGYPPQGAYPPQ----GYPPQ 183
Score = 33.5 bits (75), Expect = 8.1 Identities = 17/35 (48%), Positives = 18/35 (51%) Frame = -2
Query: 273 QHPYPPAGARPPVGHPRKGLQPPFETG*GYSPQHQ 169 Q YPP G PP G P +G QPP Y PQ Q Sbjct: 301 QGAYPPQGQYPPQGQPHQGQQPPQGQ---YPPQGQ 332
>tr|A3MU76|A3MU76_PYRCJ Chromosome segregation ATPase-like protein OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=Pcal_0767 PE=4 SV=1 Length = 5058
Score = 35.4 bits (80), Expect = 2.1 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Frame = +1
Query: 79 WQSPRRWSSDLCSWPFWPSRACHLPRPSVDLVL--WTIPLASL-KWRLETFPWMPNRRSC 249 W R+ + +W P R HL PS +V WT +A + KWR E PW P++ Sbjct: 584 WNYTTRYYNATVAWVDKPWRPSHLAHPSSKVVQVPWTEAIAVVVKWR-EAGPWWPDQPGN 642
Query: 250 ACRRIW 267 C W Sbjct: 643 YCANWW 648
>tr|B4VLJ5|B4VLJ5_9CYAN Putative uncharacterized protein OS=Microcoleus chthonoplastes PCC 7420 GN=MC7420_533 PE=4 SV=1 Length = 503
Score = 35.0 bits (79), Expect = 2.8 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = +1
Query: 109 LCSWPFWPSRACHLPRPSVDLVLWTIPLASLKWRLETFPWM 231 +C W FW S+ LP P + L++ T+PL SL+ +PW+ Sbjct: 393 VCGWEFWRSQQQFLPSPQL-LIIATLPLPSLE-----YPWV 427
>tr|B8C761|B8C761_THAPS Predicted protein OS=Thalassiosira pseudonana CCMP1335 GN=THAPSDRAFT_23803 PE=4 SV=1 Length = 382
Score = 35.0 bits (79), Expect = 2.8 Identities = 16/38 (42%), Positives = 18/38 (47%) Frame = -2
Query: 264 YPPAGARPPVGHPRKGLQPPFETG*GYSPQHQVHGWPW 151 YPP G PP P G PP+ GY P HG P+ Sbjct: 271 YPPYGGPPPHYDPYAGYPPPYPPHGGYYPPPPGHGGPY 308
>tr|Q3BDN3|Q3BDN3_9MOLL Rhodopsin (Fragment) OS=Octopus ornatus PE=4 SV=1 Length = 287
Score = 35.0 bits (79), Expect = 2.8 Identities = 19/39 (48%), Positives = 22/39 (56%) Frame = -2
Query: 264 YPPAGARPPVGHPRKGLQPPFETG*GYSPQHQVHGWPWQ 148 YPP GA PP G+P +G PP GY PQ G+P Q Sbjct: 257 YPPQGAYPPQGYPPQGAYPPQ----GYPPQ----GYPPQ 287
>tr|Q0RQ37|Q0RQ37_FRAAA Putative uncharacterized protein OS=Frankia alni (strain ACN14a) GN=FRAAL1686 PE=4 SV=1 Length = 2041
Score = 34.7 bits (78), Expect = 3.6 Identities = 22/58 (37%), Positives = 26/58 (44%) Frame = +1
Query: 100 SSDLCSWPFWPSRACHLPRPSVDLVLWTIPLASLKWRLETFPWMPNRRSCACRRIWML 273 S SWP W R P P VD VL PL L + TF R+ RR+WM+ Sbjct: 1725 SEPTSSWPLWADR----PWPLVDRVLSARPLWRLDGQRATFVRRRRWRAWERRRLWMI 1778
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