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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947711
Clone id YMU02A01NGRL0016_M08
Library
Length 390
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_M08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GTAACTTATGCAGAGGAGGAACATCCCGACTGGGAGATTTCCAAAGGTTGCATTTATTTT
CAGCGAGCGAAAGAGACAGTACACAGGGAGATTCCCTCTTTACCGCTAATCAACCAAACG
CTGGGTTATGCTAGGGAGCTAGAGCGGATCGTGTGAAGAACTGATTAGAAGGTCGATGAG
ACATACAAGCGGGCTGTGGCAGTGCAAAGGACGGGCCAAATTTTTTTGCAACTGAGCTTT
TGACATGCATTTCTGCTGATTGTGTCTCTCATTATTTTGAATGTCGTCCAATGCACTTCT
TATAATATTTTCAATGAGGGCGGCCTCACAAAATTTAATCAAAAAACCGTCCGTGTCTGT
NAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P02889
Definition sp|P02889|PSMD8_DICDI Probable 26S proteasome non-ATPase regulatory subunit 8 OS=Dictyostelium discoideum
Align length 43
Score (bit) 38.9
E-value 0.008
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947711|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_M08, 5'
         (361 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P02889|PSMD8_DICDI Probable 26S proteasome non-ATPase regulat...    39   0.008
sp|P03331|GAG_FRSF5 Gag polyprotein OS=Friend spleen focus-formi...    32   1.3  
sp|Q96UR9|AOX_MONFR Alternative oxidase, mitochondrial OS=Monili...    30   4.9  
sp|A1JRR0|Y2421_YERE8 Putative hydrolase YE2421 OS=Yersinia ente...    29   6.4  
sp|A7FIE8|Y2053_YERP3 Putative hydrolase YpsIP31758_2053 OS=Yers...    29   8.4  
sp|Q8ZEW6|Y2037_YERPE Putative hydrolase YPO2037/y2275/YP_1880 O...    29   8.4  
sp|Q66AW1|Y2019_YERPS Putative hydrolase YPTB2019 OS=Yersinia ps...    29   8.4  
sp|Q1CJI6|Y1514_YERPN Putative hydrolase YPN_1514 OS=Yersinia pe...    29   8.4  
sp|Q1C836|Y1419_YERPA Putative hydrolase YPA_1419 OS=Yersinia pe...    29   8.4  
sp|A4TJM2|Y1086_YERPP Putative hydrolase YPDSF_1086 OS=Yersinia ...    29   8.4  

>sp|P02889|PSMD8_DICDI Probable 26S proteasome non-ATPase regulatory
           subunit 8 OS=Dictyostelium discoideum GN=psmD8-1 PE=2
           SV=2
          Length = 263

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = +1

Query: 28  DWEISKGCIYF-QRAKETVHREIPSLPLINQTLGYARELERIV 153
           +W++    I F     +TV  EIPSL LI+QTL YA+ELERIV
Sbjct: 223 NWKVQGDVIQFGNNDNQTV--EIPSLQLIHQTLHYAKELERIV 263


>sp|P03331|GAG_FRSF5 Gag polyprotein OS=Friend spleen focus-forming
           virus (isolate 502) GN=gag PE=3 SV=3
          Length = 187

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 27/81 (33%), Positives = 37/81 (45%)
 Frame = -1

Query: 244 VKSSVAKKFGPSFALPQPACMSHRPSNQFFTRSALAP*HNPAFG*LAVKRESPCVLSLSL 65
           VK  V+ K  PS   P    +   PS Q   RSAL P   P+         SP +  LSL
Sbjct: 97  VKPFVSPKLSPS---PTAPILPSGPSTQPPPRSALYPALTPSIK----PGPSPIMADLSL 149

Query: 64  AENKCNLWKSPSRDVPPLHKL 2
             ++  L ++  RD PPL ++
Sbjct: 150 TFSQKTLRRTEDRDRPPLTEM 170


>sp|Q96UR9|AOX_MONFR Alternative oxidase, mitochondrial OS=Monilinia
           fructicola GN=AOX1 PE=3 SV=1
          Length = 358

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 238 SSVAKKFGPSFALPQPACMSHRPSNQFFTRSA 143
           S  A  F  S+ALP   C +H PS + FT  A
Sbjct: 20  SKAAAFFAQSYALPSTKCTAHVPSRRPFTSGA 51


>sp|A1JRR0|Y2421_YERE8 Putative hydrolase YE2421 OS=Yersinia
           enterocolitica serotype O:8 / biotype 1B (strain 8081)
           GN=YE2421 PE=3 SV=1
          Length = 245

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -2

Query: 225 KNLARPLHCHSPLVCLIDLLISSSHDPL*LP----SITQRLVD*R*RGNLPV 82
           KNL   + C  P++  IDLLI+  H+P+  P    + TQ ++    +GN+ +
Sbjct: 77  KNLDGDIDCTGPMLDAIDLLIAGFHEPVFPPQDKAANTQAMIATMAQGNVHI 128


>sp|A7FIE8|Y2053_YERP3 Putative hydrolase YpsIP31758_2053
           OS=Yersinia pseudotuberculosis serotype O:1b (strain IP
           31758) GN=YpsIP31758_2053 PE=3 SV=1
          Length = 245

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -2

Query: 225 KNLARPLHCHSPLVCLIDLLISSSHDPL*LP----SITQRLVD*R*RGNLPV 82
           KNL   + C  P++  +DLLI+  H+P+  P    + TQ ++    +GN+ +
Sbjct: 77  KNLDGDIDCTGPMLDAVDLLIAGFHEPVFPPQDKAANTQAMIATMAQGNVHI 128


>sp|Q8ZEW6|Y2037_YERPE Putative hydrolase YPO2037/y2275/YP_1880
           OS=Yersinia pestis GN=YPO2037 PE=3 SV=1
          Length = 245

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -2

Query: 225 KNLARPLHCHSPLVCLIDLLISSSHDPL*LP----SITQRLVD*R*RGNLPV 82
           KNL   + C  P++  +DLLI+  H+P+  P    + TQ ++    +GN+ +
Sbjct: 77  KNLDGDIDCTGPMLDAVDLLIAGFHEPVFPPQDKAANTQAMIATMAQGNVHI 128


>sp|Q66AW1|Y2019_YERPS Putative hydrolase YPTB2019 OS=Yersinia
           pseudotuberculosis GN=YPTB2019 PE=3 SV=1
          Length = 245

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -2

Query: 225 KNLARPLHCHSPLVCLIDLLISSSHDPL*LP----SITQRLVD*R*RGNLPV 82
           KNL   + C  P++  +DLLI+  H+P+  P    + TQ ++    +GN+ +
Sbjct: 77  KNLDGDIDCTGPMLDAVDLLIAGFHEPVFPPQDKAANTQAMIATMAQGNVHI 128


>sp|Q1CJI6|Y1514_YERPN Putative hydrolase YPN_1514 OS=Yersinia
           pestis bv. Antiqua (strain Nepal516) GN=YPN_1514 PE=3
           SV=1
          Length = 245

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -2

Query: 225 KNLARPLHCHSPLVCLIDLLISSSHDPL*LP----SITQRLVD*R*RGNLPV 82
           KNL   + C  P++  +DLLI+  H+P+  P    + TQ ++    +GN+ +
Sbjct: 77  KNLDGDIDCTGPMLDAVDLLIAGFHEPVFPPQDKAANTQAMIATMAQGNVHI 128


>sp|Q1C836|Y1419_YERPA Putative hydrolase YPA_1419 OS=Yersinia
           pestis bv. Antiqua (strain Antiqua) GN=YPA_1419 PE=3
           SV=1
          Length = 245

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -2

Query: 225 KNLARPLHCHSPLVCLIDLLISSSHDPL*LP----SITQRLVD*R*RGNLPV 82
           KNL   + C  P++  +DLLI+  H+P+  P    + TQ ++    +GN+ +
Sbjct: 77  KNLDGDIDCTGPMLDAVDLLIAGFHEPVFPPQDKAANTQAMIATMAQGNVHI 128


>sp|A4TJM2|Y1086_YERPP Putative hydrolase YPDSF_1086 OS=Yersinia
           pestis (strain Pestoides F) GN=YPDSF_1086 PE=3 SV=1
          Length = 245

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -2

Query: 225 KNLARPLHCHSPLVCLIDLLISSSHDPL*LP----SITQRLVD*R*RGNLPV 82
           KNL   + C  P++  +DLLI+  H+P+  P    + TQ ++    +GN+ +
Sbjct: 77  KNLDGDIDCTGPMLDAVDLLIAGFHEPVFPPQDKAANTQAMIATMAQGNVHI 128
tr_hit_id B8LPE5
Definition tr|B8LPE5|B8LPE5_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 50
Score (bit) 79.3
E-value 9.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947711|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_M08, 5'
         (361 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LPE5|B8LPE5_PICSI Putative uncharacterized protein OS=Picea...    79   9e-14
tr|Q9SGW3|Q9SGW3_ARATH F1N19.9 (26S proteasome subunit RPN12) (A...    72   1e-11
tr|Q6XJF4|Q6XJF4_ARATH 26S proteasome subunit RPN12 OS=Arabidops...    72   1e-11
tr|B7FL82|B7FL82_MEDTR Putative uncharacterized protein OS=Medic...    72   1e-11
tr|A7QU47|A7QU47_VITVI Chromosome chr2 scaffold_176, whole genom...    72   1e-11
tr|B4FR70|B4FR70_MAIZE 26S proteasome non-ATPase regulatory subu...    72   2e-11
tr|Q0GEA1|Q0GEA1_CAMSI 26S proteasome regulatory particle non-AT...    71   2e-11
tr|B6TTI7|B6TTI7_MAIZE 26S proteasome non-ATPase regulatory subu...    71   3e-11
tr|B4FCY9|B4FCY9_MAIZE 26S proteasome non-ATPase regulatory subu...    71   3e-11
tr|B8B5M9|B8B5M9_ORYSI Putative uncharacterized protein OS=Oryza...    70   4e-11
tr|A9PI71|A9PI71_POPTR Putative uncharacterized protein OS=Popul...    70   4e-11
tr|Q8W423|Q8W423_ORYSJ Os07g0435100 protein OS=Oryza sativa subs...    70   5e-11
tr|Q9FHY0|Q9FHY0_ARATH Similarity to 26S proteasome regulatory c...    68   2e-10
tr|A9SDG8|A9SDG8_PHYPA Predicted protein OS=Physcomitrella paten...    68   2e-10
tr|A9S4T6|A9S4T6_PHYPA Predicted protein OS=Physcomitrella paten...    68   2e-10
tr|A9PA93|A9PA93_POPTR Putative uncharacterized protein OS=Popul...    62   2e-08
tr|A3BJ58|A3BJ58_ORYSJ Methionine aminopeptidase OS=Oryza sativa...    44   0.003
tr|B3L474|B3L474_PLAKH 26S proteasome non-ATPase regulatory subu...    43   0.007
tr|A5KBD6|A5KBD6_PLAVI 26S proteasome regulatory particle non-AT...    43   0.009
tr|A8IR87|A8IR87_CHLRE 26S proteasome regulatory subunit OS=Chla...    42   0.012
tr|Q7RNU7|Q7RNU7_PLAYO Putative uncharacterized protein PY01718 ...    42   0.015
tr|Q4Z6R6|Q4Z6R6_PLABE 26S proteasome regulatory subunit S14, pu...    41   0.034
tr|Q4XWB6|Q4XWB6_PLACH 26S proteasome regulatory subunit S14, pu...    40   0.045
tr|A4S226|A4S226_OSTLU Predicted protein OS=Ostreococcus lucimar...    39   0.13 
tr|B8BQK4|B8BQK4_THAPS 26S proteasome regulatory subunit OS=Thal...    38   0.22 
tr|A7ERG0|A7ERG0_SCLS1 Putative uncharacterized protein OS=Scler...    37   0.65 
tr|Q1GU63|Q1GU63_SPHAL Membrane protein OS=Sphingopyxis alaskens...    37   0.65 
tr|Q4UD14|Q4UD14_THEAN 26S proteasome regulatory subunit, putati...    35   1.4  
tr|A4QRQ5|A4QRQ5_MAGGR Putative uncharacterized protein OS=Magna...    35   1.9  
tr|B2VSK9|B2VSK9_PYRTR 26S proteasome non-ATPase regulatory subu...    35   2.5  

>tr|B8LPE5|B8LPE5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 267

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 37/50 (74%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
 Frame = +1

Query: 7   YAEEEHPDWEISKGCIYFQRAKETV-HREIPSLPLINQTLGYARELERIV 153
           Y  EEHP+WEI  GC+YFQ+AKE+   +EIPSL LINQTLGYARELERIV
Sbjct: 218 YVTEEHPEWEIRNGCVYFQKAKESAPSKEIPSLQLINQTLGYARELERIV 267


>tr|Q9SGW3|Q9SGW3_ARATH F1N19.9 (26S proteasome subunit RPN12)
           (At1g64520/F1N19_10) OS=Arabidopsis thaliana GN=RPN12
           PE=2 SV=1
          Length = 267

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 34/52 (65%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
 Frame = +1

Query: 1   VTYAEEEHPDWEISKGCIYFQRAKETVH-REIPSLPLINQTLGYARELERIV 153
           +TY  +EHP+WE+ +G + FQ+AKET   +EIPSL LINQTL YARELERIV
Sbjct: 216 LTYVTDEHPEWEVKEGFVVFQKAKETAPCKEIPSLQLINQTLSYARELERIV 267


>tr|Q6XJF4|Q6XJF4_ARATH 26S proteasome subunit RPN12 OS=Arabidopsis
           thaliana GN=RPN12 PE=2 SV=1
          Length = 267

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 34/52 (65%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
 Frame = +1

Query: 1   VTYAEEEHPDWEISKGCIYFQRAKETVH-REIPSLPLINQTLGYARELERIV 153
           +TY  +EHP+WE+ +G + FQ+AKET   +EIPSL LINQTL YARELERIV
Sbjct: 216 LTYVTDEHPEWEVKEGFVVFQKAKETAPCKEIPSLQLINQTLSYARELERIV 267


>tr|B7FL82|B7FL82_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 267

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 34/50 (68%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
 Frame = +1

Query: 7   YAEEEHPDWEISKGCIYFQRAKETVH-REIPSLPLINQTLGYARELERIV 153
           Y +EEHP+WEI  G +YFQ+AK++   +EIPSL LINQTL YARELERIV
Sbjct: 218 YIKEEHPEWEIKNGSVYFQKAKDSAPCKEIPSLQLINQTLSYARELERIV 267


>tr|A7QU47|A7QU47_VITVI Chromosome chr2 scaffold_176, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00006696001
           PE=4 SV=1
          Length = 267

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 35/50 (70%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
 Frame = +1

Query: 7   YAEEEHPDWEISKGCIYFQRAKETVH-REIPSLPLINQTLGYARELERIV 153
           Y +EEHP+WEI  G ++FQRAKE+   +EIPSL LINQTL YARELERIV
Sbjct: 218 YIKEEHPEWEIKNGHVFFQRAKESAPCKEIPSLQLINQTLSYARELERIV 267


>tr|B4FR70|B4FR70_MAIZE 26S proteasome non-ATPase regulatory subunit
           8 OS=Zea mays PE=2 SV=1
          Length = 267

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 33/50 (66%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
 Frame = +1

Query: 7   YAEEEHPDWEISKGCIYFQRAKETV-HREIPSLPLINQTLGYARELERIV 153
           Y  EEHP+WE+  G ++FQ+AKE+  ++EIPSL LINQTL YARELERIV
Sbjct: 218 YITEEHPEWELKNGAVFFQKAKESQPYKEIPSLQLINQTLSYARELERIV 267


>tr|Q0GEA1|Q0GEA1_CAMSI 26S proteasome regulatory particle
           non-ATPase subunit 12 OS=Camellia sinensis PE=2 SV=1
          Length = 267

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 35/50 (70%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
 Frame = +1

Query: 7   YAEEEHPDWEISKGCIYFQRAKETVH-REIPSLPLINQTLGYARELERIV 153
           Y +EEHP+WEI  G + FQRAKE+   +EIPSL LINQTL YARELERIV
Sbjct: 218 YIKEEHPEWEIKNGFVIFQRAKESAPCKEIPSLQLINQTLSYARELERIV 267


>tr|B6TTI7|B6TTI7_MAIZE 26S proteasome non-ATPase regulatory subunit
           8 OS=Zea mays PE=2 SV=1
          Length = 267

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 34/50 (68%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
 Frame = +1

Query: 7   YAEEEHPDWEISKGCIYFQRAKETVH-REIPSLPLINQTLGYARELERIV 153
           Y  EEHP+WEI  G ++FQ+AKE+   +EIPSL LINQTL YARELERIV
Sbjct: 218 YITEEHPEWEIKNGAVFFQKAKESQPCKEIPSLQLINQTLSYARELERIV 267


>tr|B4FCY9|B4FCY9_MAIZE 26S proteasome non-ATPase regulatory subunit
           8 OS=Zea mays PE=2 SV=1
          Length = 267

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 34/50 (68%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
 Frame = +1

Query: 7   YAEEEHPDWEISKGCIYFQRAKETVH-REIPSLPLINQTLGYARELERIV 153
           Y  EEHP+WEI  G ++FQ+AKE+   +EIPSL LINQTL YARELERIV
Sbjct: 218 YITEEHPEWEIKNGAVFFQKAKESQPCKEIPSLQLINQTLSYARELERIV 267


>tr|B8B5M9|B8B5M9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25803 PE=4 SV=1
          Length = 267

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 34/50 (68%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
 Frame = +1

Query: 7   YAEEEHPDWEISKGCIYFQRAKETVH-REIPSLPLINQTLGYARELERIV 153
           Y  EEHP+WEI  G ++FQ+AKET   +EIPSL +INQTL YARELERIV
Sbjct: 218 YIAEEHPEWEIKDGSVFFQKAKETQPCKEIPSLQVINQTLSYARELERIV 267