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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947609
Clone id YMU02A01NGRL0016_H05
Library
Length 384
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_H05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GAATTATATCCCCTTGTTTTAGCAAACCCGTTCTTTCTCTTCCTCATGTCTCGTTCTGTT
TGAGGTTTCGATTGCCCCTTGCTTATGTTGAAACTTTCACTCCCAGTCATAGCCATCGTT
TTGTTGTGTAGGTCTCCTTTGCTTTTCTTTTATTGTTGCTGTCTTATTGCTGGTCCTCGT
AAGTGGTGTTCGTAACTTCATTATGTTTTGTGTTTCTTGAACCAGCCTTTTTGGAGACCT
TCCTTTGCAATGCTCTTATATCCCGAATGTGGAGTGTAGTTTGCACGATCAACTATGGAA
ACTTCCTTTTCACGTTCGTTTGGCGCGCGGGCCCAATAGGTAAGTTGTCGTCCGCCTCGC
TCTTTCCTAAGATATCCAGACCAT
■■Homology search results ■■ -
sp_hit_id A1JRH8
Definition sp|A1JRH8|AAEB_YERE8 p-hydroxybenzoic acid efflux pump subunit aaeB OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081)
Align length 29
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947609|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_H05, 5'
         (384 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1JRH8|AAEB_YERE8 p-hydroxybenzoic acid efflux pump subunit a...    30   4.9  
sp|P15924|DESP_HUMAN Desmoplakin OS=Homo sapiens GN=DSP PE=1 SV=3      29   6.5  
sp|P34672|YO22_CAEEL Uncharacterized protein ZK688.2 OS=Caenorha...    29   8.2  
sp|Q9GZR1|SENP6_HUMAN Sentrin-specific protease 6 OS=Homo sapien...    29   8.2  
sp|Q70KF4|CMYA5_MOUSE Cardiomyopathy-associated protein 5 OS=Mus...    29   8.2  
sp|Q8BZL4|GPR22_MOUSE Probable G-protein coupled receptor 22 OS=...    29   8.4  
sp|O08788|DCTN1_MOUSE Dynactin subunit 1 OS=Mus musculus GN=Dctn...    29   8.4  
sp|Q665H2|AAEB_YERPS p-hydroxybenzoic acid efflux pump subunit a...    29   8.4  
sp|A4THF0|AAEB_YERPP p-hydroxybenzoic acid efflux pump subunit a...    29   8.4  
sp|Q1CDW7|AAEB_YERPN p-hydroxybenzoic acid efflux pump subunit a...    29   8.4  
sp|Q8ZAU8|AAEB_YERPE p-hydroxybenzoic acid efflux pump subunit a...    29   8.4  
sp|Q1C1L1|AAEB_YERPA p-hydroxybenzoic acid efflux pump subunit a...    29   8.4  
sp|A7FDT6|AAEB_YERP3 p-hydroxybenzoic acid efflux pump subunit a...    29   8.4  

>sp|A1JRH8|AAEB_YERE8 p-hydroxybenzoic acid efflux pump subunit aaeB
           OS=Yersinia enterocolitica serotype O:8 / biotype 1B
           (strain 8081) GN=aaeB PE=3 SV=1
          Length = 651

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 106 VIAIVLLCRSPLLFFYCCCLIAGPRKWCS 192
           +I IVL  R+P+L    CCL AG   W S
Sbjct: 80  LIIIVLTIRAPVLTLMLCCLWAGVCTWIS 108


>sp|P15924|DESP_HUMAN Desmoplakin OS=Homo sapiens GN=DSP PE=1 SV=3
          Length = 2871

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
 Frame = -1

Query: 231  KRLVQETQNIMKLRTPLTRT-SNKTATIKEKQRRPTQ----QNDGYDWE*KFQHKQGAIE 67
            K L Q+   + +L   L R  S   A  + KQR   +    QND   W+ ++  K+ AI 
Sbjct: 1820 KVLEQDKARLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQNDLNQWKTQYSRKEEAIR 1879

Query: 66   TSNRTRHEEEKER 28
                 R + E+E+
Sbjct: 1880 KIESEREKSEREK 1892


>sp|P34672|YO22_CAEEL Uncharacterized protein ZK688.2
           OS=Caenorhabditis elegans GN=ZK688.2 PE=2 SV=1
          Length = 632

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = -2

Query: 194 YEHHLRGPAIRQQQ*KKSKGDLHNKTM----AMTGSESFNISKGQSKPQTERDMRKRKNG 27
           ++HH+    +   +  +++  +  K+     A+T  E FN + GQ + + +RD +K+K  
Sbjct: 516 FQHHVLDDVLEDDESDENQLTIRKKSSVLQPAITLVERFNEATGQLETEVKRDEKKKKEE 575

Query: 26  FAKTRGYN 3
             +  G N
Sbjct: 576 ELREEGDN 583


>sp|Q9GZR1|SENP6_HUMAN Sentrin-specific protease 6 OS=Homo sapiens
            GN=SENP6 PE=1 SV=2
          Length = 1112

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 211  TKHNEVTNTTYEDQQ*DSNNKRKAKETYTTK 119
            TK  E+ N   + Q+  S  KRK K+TY+T+
Sbjct: 1066 TKREEIRNIILKLQEDQSKEKRKHKDTYSTE 1096


>sp|Q70KF4|CMYA5_MOUSE Cardiomyopathy-associated protein 5 OS=Mus
            musculus GN=Cmya5 PE=1 SV=2
          Length = 3739

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = -3

Query: 382  GLDILGKSEADDNLPIGPARQTNVKRKFP*LIVQTTLHI----RDIRALQRKVSKKAGSR 215
            GL  +GKSE    LP+     + V R  P L V + + +     +   LQ   + K    
Sbjct: 1560 GLKGIGKSELGSGLPLPSMSASEVLRPEPKLPVNSGVEVEREDNEPPPLQVSPTSKPTVP 1619

Query: 214  NTKHNEVTNT 185
            N KH E+T +
Sbjct: 1620 NDKHEEITRS 1629


>sp|Q8BZL4|GPR22_MOUSE Probable G-protein coupled receptor 22 OS=Mus
           musculus GN=Gpr22 PE=2 SV=1
          Length = 432

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +1

Query: 85  MLKLSLPVIAIVLLCRSPLLFFYCCCLIAGPRKWCS*LHYVLCFLNQPFWRPSFAMLLY 261
           + K+SL +I+  LLC +P+       L  GP      L   LCFL   +    F  LLY
Sbjct: 310 VFKMSLLIISTFLLCWTPISVLNTTILCLGPSDLLVKLR--LCFLVMAYGTTIFHPLLY 366


>sp|O08788|DCTN1_MOUSE Dynactin subunit 1 OS=Mus musculus GN=Dctn1
           PE=1 SV=2
          Length = 1281

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -1

Query: 198 KLRTPLTRTSNKTATIKEKQRRPTQQNDGYDWE*KFQHKQGAIETSNRTRHEEEKE 31
           KL T   + S   A +KE ++   Q     +W+ K Q +Q  ++   +   +E KE
Sbjct: 230 KLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKE 285


>sp|Q665H2|AAEB_YERPS p-hydroxybenzoic acid efflux pump subunit aaeB
           OS=Yersinia pseudotuberculosis GN=aaeB PE=3 SV=1
          Length = 651

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 106 VIAIVLLCRSPLLFFYCCCLIAGPRKWCS 192
           ++ IVL  R+P+L    CCL AG   W S
Sbjct: 80  LVIIVLTIRAPVLTLMLCCLWAGICTWIS 108


>sp|A4THF0|AAEB_YERPP p-hydroxybenzoic acid efflux pump subunit aaeB
           OS=Yersinia pestis (strain Pestoides F) GN=aaeB PE=3
           SV=1
          Length = 651

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 106 VIAIVLLCRSPLLFFYCCCLIAGPRKWCS 192
           ++ IVL  R+P+L    CCL AG   W S
Sbjct: 80  LVIIVLTIRAPVLTLMLCCLWAGICTWIS 108


>sp|Q1CDW7|AAEB_YERPN p-hydroxybenzoic acid efflux pump subunit aaeB
           OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=aaeB
           PE=3 SV=1
          Length = 651

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 106 VIAIVLLCRSPLLFFYCCCLIAGPRKWCS 192
           ++ IVL  R+P+L    CCL AG   W S
Sbjct: 80  LVIIVLTIRAPVLTLMLCCLWAGICTWIS 108
tr_hit_id B2IXP0
Definition tr|B2IXP0|B2IXP0_NOSP7 Putative transposase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
Align length 89
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947609|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_H05, 5'
         (384 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2IXP0|B2IXP0_NOSP7 Putative transposase OS=Nostoc punctiform...    35   1.4  
tr|B3M0U7|B3M0U7_DROAN GF17176 OS=Drosophila ananassae GN=GF1717...    34   4.2  
tr|Q86IV3|Q86IV3_DICDI Putative uncharacterized protein (Putativ...    33   9.3  
tr|A1RPG0|A1RPG0_SHESW Alanine-glyoxylate aminotransferase OS=Sh...    33   9.4  

>tr|B2IXP0|B2IXP0_NOSP7 Putative transposase OS=Nostoc punctiforme
           (strain ATCC 29133 / PCC 73102) GN=Npun_F3080 PE=4 SV=1
          Length = 370

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
 Frame = -1

Query: 279 LHSTFGI*EHCKGRSPKRLVQET------QNIMKLRTPLTRTSNKTATIKEKQRRPTQQN 118
           LHS   I E  KG+S   L Q+       Q + K  TP  +   + A  KE ++RP +Q 
Sbjct: 45  LHSALAI-EPEKGQSLGLLWQKLWNREPKQKLPKDETPTQKKQRQAAARKEARKRPFEQK 103

Query: 117 DGYDWE*KFQHKQGAIETSNRTRHEEEKE 31
           + Y W       +  +  S R  H  ++E
Sbjct: 104 ESYRWVEALTTVENEVSKSTRVIHVFDRE 132


>tr|B3M0U7|B3M0U7_DROAN GF17176 OS=Drosophila ananassae GN=GF17176
           PE=4 SV=1
          Length = 872

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -3

Query: 247 QRKVSKKAGSRNTKHNEVTNTTYEDQQ*DSNNKRKAKETYTTK 119
           Q++  ++ GS  T+HN+  N T + Q    +NK+K KET T K
Sbjct: 246 QQQQQQQNGSPKTQHNQANNKTKQQQ----HNKQKQKETLTAK 284


>tr|Q86IV3|Q86IV3_DICDI Putative uncharacterized protein (Putative
           U4/U6.U5 small nuclear ribonucleoparticle-associated
           protein) OS=Dictyostelium discoideum GN=prpf38a PE=4
           SV=1
          Length = 515

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/64 (26%), Positives = 34/64 (53%)
 Frame = -1

Query: 219 QETQNIMKLRTPLTRTSNKTATIKEKQRRPTQQNDGYDWE*KFQHKQGAIETSNRTRHEE 40
           +E   I+KL++  T TS+ +++I       T +N+  + + K +HK+   E  N   ++ 
Sbjct: 235 EEYDKILKLKSKSTTTSSSSSSITTTTTTTTIENENENEKHKEKHKEKHKENENENENKR 294

Query: 39  EKER 28
            KE+
Sbjct: 295 YKEK 298


>tr|A1RPG0|A1RPG0_SHESW Alanine-glyoxylate aminotransferase
           OS=Shewanella sp. (strain W3-18-1) GN=Sputw3181_3750
           PE=3 SV=1
          Length = 377

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 344 LTYWARAPNEREKEVSIVDRANYTPHSGYKSIAKEGLQKGWFKKH 210
           + YWA A  +R    +    A Y  H   + +A EGL+  W + H
Sbjct: 241 MAYWASAGGKRSYHHTAPVNALYALHESLRMLAAEGLENAWQRHH 285