DK947280
Clone id YMU02A01NGRL0015_G07
Library
Length 392
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_G07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
GAAGGAAGCTATTGATTATATCGAAGTGTCAGGTTGAGAAATCATAAGATTGATCAAGGC
CTGCGGGAATTGTATACAAAATGGGTGTGACATTAAAAGCCTTCTACAGTGTATGTTGTA
TATTGATGTGCTTACAAGAAAAAGGATTAAAAAAGTGGGCTGTGTATAGTCAGGTATAAT
AATGATGATGAATTTGTACAGAACGCGTCTCCTCCACTTTTGGAGGTTTGGGCCAGCAGT
CAAATACCACTAAGGTCTCAGCTTGATCACCTGGGTTGACATGTTGCCCACTGCTGACAG
CCATTTGTATTCTCCATGTACAAATTAATACATCCGAGAGTGGAAGTCTTGACATAGCAN
AAAAAAAAAAAAAAAAAAAAAAAAAAAACTGT
■■Homology search results ■■ -
sp_hit_id Q9UTL8
Definition sp|Q9UTL8|AP3D_SCHPO AP-3 complex subunit delta OS=Schizosaccharomyces pombe
Align length 49
Score (bit) 29.6
E-value 4.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947280|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_G07, 5'
(360 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9UTL8|AP3D_SCHPO AP-3 complex subunit delta OS=Schizosacchar... 30 4.9
sp|Q6F7Y9|MNMC_ACIAD tRNA 5-methylaminomethyl-2-thiouridine bios... 29 8.4

>sp|Q9UTL8|AP3D_SCHPO AP-3 complex subunit delta
OS=Schizosaccharomyces pombe GN=apl5 PE=2 SV=1
Length = 834

Score = 29.6 bits (65), Expect = 4.9
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Frame = -1

Query: 147 ILFLVSTSIYNIHCRRLLMSHPFCIQFPQAL------INLMISQPDTSI 19
+L L++ S+ + R +L+ + C+Q+P+A+ + + PDTS+
Sbjct: 140 VLILLNHSVPYVRKRTILLLYRLCLQYPEAISACIPKLRERLDDPDTSV 188


>sp|Q6F7Y9|MNMC_ACIAD tRNA 5-methylaminomethyl-2-thiouridine
biosynthesis bifunctional protein mnmC OS=Acinetobacter
sp. (strain ADP1) GN=mnmC PE=3 SV=1
Length = 623

Score = 28.9 bits (63), Expect = 8.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1

Query: 217 LLEVWASSQIPLRSQLDHLG*HVAHC*QPFVFSMYKLIHPRVE 345
+L+ ++ Q PL +Q D+L H A P +F L HP +E
Sbjct: 367 VLDAHSAQQSPLETQYDYLTLHYAGVISPQLFCNQVLQHPLIE 409


tr_hit_id Q70AZ7
Definition tr|Q70AZ7|Q70AZ7_ACTTI Non-ribosomal peptide synthetase OS=Actinoplanes teichomyceticus
Align length 51
Score (bit) 32.7
E-value 9.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947280|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_G07, 5'
(360 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q70AZ7|Q70AZ7_ACTTI Non-ribosomal peptide synthetase OS=Actin... 33 9.4
tr|Q6ZZJ4|Q6ZZJ4_ACTTI Peptide synthetase, module 4-6 OS=Actinop... 33 9.4

>tr|Q70AZ7|Q70AZ7_ACTTI Non-ribosomal peptide synthetase
OS=Actinoplanes teichomyceticus GN=tcp11 PE=3 SV=1
Length = 4067

Score = 32.7 bits (73), Expect = 9.4
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Frame = -3

Query: 343 PLSDVLICTWRIQMAVSSGQHVN---------PGDQAETLVVFDCWPKPPK 218
P D+L R Q+A+ + QH+ PG +TLVVF+ +P+PP+
Sbjct: 3312 PFLDMLTDLQRRQVAMMAHQHLGLSEIKQVAGPGAAFDTLVVFENYPRPPR 3362


>tr|Q6ZZJ4|Q6ZZJ4_ACTTI Peptide synthetase, module 4-6 OS=Actinoplanes
teichomyceticus GN=teiC PE=3 SV=1
Length = 4067

Score = 32.7 bits (73), Expect = 9.4
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Frame = -3

Query: 343 PLSDVLICTWRIQMAVSSGQHVN---------PGDQAETLVVFDCWPKPPK 218
P D+L R Q+A+ + QH+ PG +TLVVF+ +P+PP+
Sbjct: 3312 PFLDMLTDLQRRQVAMMAHQHLGLSEIKQVAGPGAAFDTLVVFENYPRPPR 3362