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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947278
Clone id YMU02A01NGRL0015_G05
Library
Length 443
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_G05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GCATGGATAAAGGTGTGACAGAGGACCAATTTAAGGATTCACCCGGGCCAGGATCAGGTG
CCGGCCGAGGCAGCGATGCATTGCAGACCATGCTTGCCAATTCAAAGCTGTAAAAGGATC
TAAATCATTACATCAATTCTCATTGATTTCATGCTGCTGCATTATGCAGCCAGCCAGTGA
TGAAACCTCCATTGGCGGCATCTTGAGCCCACCGGATTATGTTATATGCTATATTTCGAT
TCATTTTGGTGTAGTTATTTACCATTTAGTGTCGGCAGCCCTCATCATATAAGAAGCTAT
TCGAATCTACGACGTACTAGTTGTACCCAAATCTCAAATTTCATGTACTCCCGTCTGCAA
GTTTTTTATCATAAATTTTCCCACCCCCACTCTTGCAGAGTGGGTGCATTCATTGTGTAA
AAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P0ADM7
Definition sp|P0ADM7|YIDX_SHIFL Uncharacterized protein yidX OS=Shigella flexneri
Align length 38
Score (bit) 32.0
E-value 0.97
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947278|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_G05, 5'
         (405 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0ADM7|YIDX_SHIFL Uncharacterized protein yidX OS=Shigella fl...    32   0.97 
sp|P0ADM6|YIDX_ECOLI Uncharacterized protein yidX OS=Escherichia...    32   0.97 
sp|P06882|THYG_RAT Thyroglobulin OS=Rattus norvegicus GN=Tg PE=1...    30   2.8  
sp|Q9ZEU4|EFG_APPPP Elongation factor G OS=Apple proliferation p...    30   3.7  
sp|Q4UNJ5|Y011_RICFE Putative ankyrin repeat protein RF_0011 OS=...    29   6.3  
sp|Q8N7K9|CS064_HUMAN Uncharacterized protein C19orf64 OS=Homo s...    29   6.3  
sp|Q03172|ZEP1_MOUSE Zinc finger protein 40 OS=Mus musculus GN=H...    29   8.2  
sp|P15822|ZEP1_HUMAN Zinc finger protein 40 OS=Homo sapiens GN=H...    29   8.2  
sp|P32550|VGLG_RABVT Glycoprotein G OS=Rabies virus (isolate Hum...    29   8.2  

>sp|P0ADM7|YIDX_SHIFL Uncharacterized protein yidX OS=Shigella
           flexneri GN=yidX PE=4 SV=1
          Length = 218

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 252 FSVGSPHHIRSYSNLRRTSCTQISNFMYSRLQVFYHKF 365
           F+ G  H  RS  NL+ T   +  N  YS++  FYH F
Sbjct: 136 FACGVQHCTRSLENLKGTIHEKNKNMDYSKVMAFYHPF 173


>sp|P0ADM6|YIDX_ECOLI Uncharacterized protein yidX OS=Escherichia
           coli (strain K12) GN=yidX PE=4 SV=1
          Length = 218

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 252 FSVGSPHHIRSYSNLRRTSCTQISNFMYSRLQVFYHKF 365
           F+ G  H  RS  NL+ T   +  N  YS++  FYH F
Sbjct: 136 FACGVQHCTRSLENLKGTIHEKNKNMDYSKVMAFYHPF 173


>sp|P06882|THYG_RAT Thyroglobulin OS=Rattus norvegicus GN=Tg PE=1 SV=4
          Length = 2768

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
 Frame = +1

Query: 118  HQFSLISC----CC---IMQPASDETSIGGILSPPDYVICYIS 225
            H F L++C    CC   I+    +  +I G+LS PD ++C+I+
Sbjct: 1720 HLFCLLACDQDSCCDGFIVTQVKEGPTICGLLSAPDILVCHIN 1762


>sp|Q9ZEU4|EFG_APPPP Elongation factor G OS=Apple proliferation
           phytoplasma GN=fusA PE=3 SV=1
          Length = 688

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -2

Query: 182 PMEVSSLAGCIMQQHEINEN*CNDLDPFTAL 90
           PM+VSS+ GC  +  EI     +D +PFTAL
Sbjct: 281 PMDVSSIVGCNFENKEIIRK-TSDNEPFTAL 310


>sp|Q4UNJ5|Y011_RICFE Putative ankyrin repeat protein RF_0011
           OS=Rickettsia felis GN=RF_0011 PE=4 SV=1
          Length = 325

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 91  KAVKGSKSLHQFSLISCCCIMQPASDETSIGGILSPPDYVICYIS 225
           K +     LH F++   C I+QPA + +S+     P + + C IS
Sbjct: 264 KTMNNFIKLHLFAIAGVCKIIQPAFETSSLHLSCLPKEAICCIIS 308


>sp|Q8N7K9|CS064_HUMAN Uncharacterized protein C19orf64 OS=Homo
           sapiens GN=C19orf64 PE=1 SV=1
          Length = 584

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 276 IRSYSNLRRTSCTQISNFMYSRLQVFYHKFSHPH 377
           I+SYS  + +S TQ+     SR Q   H  +HPH
Sbjct: 20  IKSYSRTQTSSETQVHTAAQSRSQPQLHPSAHPH 53


>sp|Q03172|ZEP1_MOUSE Zinc finger protein 40 OS=Mus musculus
           GN=Hivep1 PE=1 SV=1
          Length = 2688

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 237 CSYLPFSVGSPH----HIRSYSNLRRTSCTQISNFMYSRLQVFYHKFSHPHSCRVG 392
           C Y   +   P     HIRS++  R   C        ++  ++ HK SH H+ ++G
Sbjct: 409 CEYCNRACAKPSVLLKHIRSHTGERPYPCVTCGFSFKTKSNLYKHKKSHAHTIKLG 464


>sp|P15822|ZEP1_HUMAN Zinc finger protein 40 OS=Homo sapiens
           GN=HIVEP1 PE=1 SV=2
          Length = 2717

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 237 CSYLPFSVGSPH----HIRSYSNLRRTSCTQISNFMYSRLQVFYHKFSHPHSCRVG 392
           C Y   +   P     HIRS++  R   C        ++  ++ HK SH H+ ++G
Sbjct: 408 CEYCNRACAKPSVLLKHIRSHTGERPYPCVTCGFSFKTKSNLYKHKKSHAHTIKLG 463


>sp|P32550|VGLG_RABVT Glycoprotein G OS=Rabies virus (isolate
           Human/Algeria/1991) GN=G PE=1 SV=1
          Length = 524

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = +3

Query: 204 LCYMLYFDSFWCSYLPFSVG--SP---HHIRSYSNL--RRTSCTQISNFMYSRLQVFY 356
           L + L F  F    +P  +G  SP   HH+R  +NL      CT +S F Y  L+V Y
Sbjct: 12  LVFPLCFGKFPIYTIPDKLGPWSPIDIHHLRCPNNLVVEDEGCTNLSGFSYMELKVGY 69
tr_hit_id A8XMQ7
Definition tr|A8XMQ7|A8XMQ7_CAEBR Putative uncharacterized protein OS=Caenorhabditis briggsae
Align length 70
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947278|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_G05, 5'
         (405 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8XMQ7|A8XMQ7_CAEBR Putative uncharacterized protein OS=Caeno...    35   1.9  
tr|Q9XWV6|Q9XWV6_CAEEL Protein Y37D8A.16, confirmed by transcrip...    35   2.5  
tr|B6MI42|B6MI42_BRAFL Putative uncharacterized protein OS=Branc...    33   5.5  
tr|A9TIP9|A9TIP9_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.4  

>tr|A8XMQ7|A8XMQ7_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG15761 PE=4 SV=1
          Length = 163

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +1

Query: 187 ILSPPDYVICYISIHFGVVIYHLVSAALII*EAIRI-YDVLVVPKSQISCTPVCKFFIIN 363
           IL  P YV  YISI++ +VI +LVSA  ++   + +    L+  + + +    C F  I 
Sbjct: 26  ILLDPAYVTAYISINYEIVIIYLVSALTLLYCIVSVLMSFLLAKRGEDTPLTNCAFSEII 85

Query: 364 FPTPTLAEWV 393
           F T  +  W+
Sbjct: 86  FATAGIMGWL 95


>tr|Q9XWV6|Q9XWV6_CAEEL Protein Y37D8A.16, confirmed by transcript
           evidence OS=Caenorhabditis elegans GN=Y37D8A.16 PE=2
           SV=1
          Length = 163

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +1

Query: 187 ILSPPDYVICYISIHFGVVIYHLVSAALII*EAIRI-YDVLVVPKSQISCTPVCKFFIIN 363
           IL  P YV  YISI++ +VI ++VSA  ++   + I    L+  + + +    C F  I 
Sbjct: 26  ILLDPAYVTAYISINYDIVIIYIVSALTLLYCLVSILMSFLLAKRGEDTPLTNCGFAEII 85

Query: 364 FPTPTLAEWV 393
           F T  +  W+
Sbjct: 86  FSTAGIIGWL 95


>tr|B6MI42|B6MI42_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_82668 PE=4 SV=1
          Length = 1731

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = +3

Query: 177 HWRHLEPTGLCYMLYFDSFWCSYLPFSVGSPHHIRSYSNLRRTSCTQISNFMYSRLQVFY 356
           ++RHL P  LCY      +    +PF  G              + T +    YS L+  Y
Sbjct: 108 YYRHLAPAPLCYRCGCRVYHVKTIPFCAGE-------------TSTWLPQLFYSVLRSSY 154

Query: 357 HKFSHP 374
           H++ HP
Sbjct: 155 HRYPHP 160


>tr|A9TIP9|A9TIP9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_93271 PE=4 SV=1
          Length = 203

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +1

Query: 82  CQFKAVKGSKSLHQFSLIS----CCCIMQPASDETSIGGILSPPDYVICYISIHFG 237
           C  + +KG KS      IS    C CI++  + E    GI+S P  VI YIS   G
Sbjct: 91  CSSRLLKGCKSTIDNGNISFIIRCLCIVRSTTHEALFFGIISLPHSVISYISDEAG 146