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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947133
Clone id YMU02A01NGRL0014_O15
Library
Length 304
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_O15. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GATGAACAATGGGCCTGGTGCCTCTGTGACAGCTCGTGTGCCATGGGAAGGCGTGCATCC
TGCCCTTTCCACATCGGAGGCCTCGAAGTACACAGTCAATAGCGTCTTTCCGAATGTGAG
CTTCATCCCCTCTGATATCCCTATCAAGGCCTCTTTGTGAGGGAAATAGCTTATAGGGGC
AGTTTTGGCATTACAGAGTTAAAACACACACACACATACACTCGCTAAAAAGACTAAGTC
TTGGAATTTTAAACTTTCTTCGAAAAAAGCCTAAAACAAAAAAAAAAATTTAAAAAAAAC
TTGT
■■Homology search results ■■ -
sp_hit_id Q43867
Definition sp|Q43867|PME1_ARATH Pectinesterase-1 OS=Arabidopsis thaliana
Align length 43
Score (bit) 45.8
E-value 7.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947133|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_O15, 5'
         (272 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q43867|PME1_ARATH Pectinesterase-1 OS=Arabidopsis thaliana GN...    46   7e-05
sp|O04887|PME2_CITSI Pectinesterase-2 OS=Citrus sinensis GN=PECS...    44   3e-04
sp|Q43111|PME3_PHAVU Pectinesterase-3 OS=Phaseolus vulgaris GN=M...    40   0.004
sp|P09607|PME21_SOLLC Pectinesterase-2 OS=Solanum lycopersicum G...    40   0.005
sp|Q96576|PME3_SOLLC Pectinesterase-3 OS=Solanum lycopersicum GN...    39   0.006
sp|Q96575|PME22_SOLLC Pectinesterase-2 OS=Solanum lycopersicum G...    39   0.008
sp|P14280|PME1_SOLLC Pectinesterase-1 OS=Solanum lycopersicum GN...    38   0.018
sp|P85076|PME_ACTDE Pectinesterase OS=Actinidia deliciosa PE=1 SV=1    35   0.12 
sp|Q43062|PME_PRUPE Pectinesterase PPE8B OS=Prunus persica PE=2 ...    34   0.20 
sp|P41510|PME_BRANA Probable pectinesterase OS=Brassica napus GN...    34   0.20 
sp|Q5MFV6|PMEL_ARATH Probable pectinesterase VGDH2 OS=Arabidopsi...    34   0.26 
sp|P83947|PME1_FICAW Pectinesterase OS=Ficus awkeotsang PE=1 SV=1      33   0.34 
sp|O04886|PME1_CITSI Pectinesterase-1 OS=Citrus sinensis GN=PECS...    32   0.76 
sp|Q42608|PME_BRACM Pectinesterase (Fragment) OS=Brassica campes...    32   1.3  
sp|Q43043|PME_PETIN Pectinesterase OS=Petunia integrifolia GN=PP...    31   2.2  
sp|P83218|PME_DAUCA Pectinesterase OS=Daucus carota PE=1 SV=1          31   2.2  
sp|Q43143|PMEU1_SOLLC Pectinesterase U1 OS=Solanum lycopersicum ...    30   2.9  
sp|P35444|COMP_RAT Cartilage oligomeric matrix protein OS=Rattus...    30   2.9  
sp|Q9R0G6|COMP_MOUSE Cartilage oligomeric matrix protein OS=Mus ...    30   2.9  
sp|Q42920|PME_MEDSA Pectinesterase OS=Medicago sativa PE=2 SV=1        30   4.9  
sp|Q96MC9|CA147_HUMAN Uncharacterized protein C1orf147 OS=Homo s...    29   6.4  
sp|P35442|TSP2_HUMAN Thrombospondin-2 OS=Homo sapiens GN=THBS2 P...    29   8.4  
sp|P35448|TSP1_XENLA Thrombospondin-1 OS=Xenopus laevis GN=thbs1...    29   8.4  
sp|P49747|COMP_HUMAN Cartilage oligomeric matrix protein OS=Homo...    29   8.4  

>sp|Q43867|PME1_ARATH Pectinesterase-1 OS=Arabidopsis thaliana
           GN=PME1 PE=2 SV=1
          Length = 586

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 19/43 (44%), Positives = 28/43 (65%)
 Frame = +2

Query: 5   NNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIPS 133
           N GPG+ VT RV W G  P +S +EA+K+TV ++     +IP+
Sbjct: 536 NTGPGSDVTQRVKWAGYKPVMSDAEAAKFTVATLLHGADWIPA 578


>sp|O04887|PME2_CITSI Pectinesterase-2 OS=Citrus sinensis
           GN=PECS-2.1 PE=2 SV=1
          Length = 510

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +2

Query: 2   MNNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIP-SDIPIKASL 157
           MN GPG+S   RV W G H   S S+ S++TV +     S++P +++P  + L
Sbjct: 458 MNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 510


>sp|Q43111|PME3_PHAVU Pectinesterase-3 OS=Phaseolus vulgaris GN=MPE3
           PE=2 SV=1
          Length = 581

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 5   NNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIPS 133
           N+GPGA V+ RV W G  P ++   A ++TV S      ++P+
Sbjct: 530 NSGPGADVSQRVKWAGYKPTITDRNAEEFTVQSFIQGPEWLPN 572


>sp|P09607|PME21_SOLLC Pectinesterase-2 OS=Solanum lycopersicum
           GN=PME2.1 PE=2 SV=2
          Length = 550

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 2   MNNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIPS 133
           MNNGPGA  + RV W G H     +EA  +TV  +    S++ S
Sbjct: 496 MNNGPGAGTSKRVKWPGYHVITDPAEAMSFTVAKLIQGGSWLRS 539


>sp|Q96576|PME3_SOLLC Pectinesterase-3 OS=Solanum lycopersicum
           GN=PME3 PE=3 SV=1
          Length = 544

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 2   MNNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIPS 133
           MNNGPGA  + RV W G H     +EA  +TV  +    S++ S
Sbjct: 490 MNNGPGAGTSKRVKWPGYHVITDPNEAMPFTVAELIQGGSWLNS 533


>sp|Q96575|PME22_SOLLC Pectinesterase-2 OS=Solanum lycopersicum
           GN=PME2 PE=3 SV=1
          Length = 550

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 2   MNNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIPS 133
           MNNGPGA  + RV W G H     +EA  +TV  +    S++ S
Sbjct: 496 MNNGPGAGTSKRVKWPGYHCITDPAEAMPFTVAKLIQGGSWLRS 539


>sp|P14280|PME1_SOLLC Pectinesterase-1 OS=Solanum lycopersicum
           GN=PME1.9 PE=1 SV=5
          Length = 546

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 2   MNNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIPS 133
           MNNGPGA  + RV W G H     ++A  +TV  +    S++ S
Sbjct: 492 MNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRS 535


>sp|P85076|PME_ACTDE Pectinesterase OS=Actinidia deliciosa PE=1 SV=1
          Length = 321

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 5   NNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIPS-DIPIKASL 157
           N GPG++ TARV W G     + +E  ++TV +      ++ S +IP+  +L
Sbjct: 269 NTGPGSNTTARVTWPGYAVTTNETEVIQFTVGNFIQGSQWLTSYNIPVYLNL 320


>sp|Q43062|PME_PRUPE Pectinesterase PPE8B OS=Prunus persica PE=2
           SV=1
          Length = 522

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 2   MNNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIPS 133
           MN GPGA + +RV W G      +++A  YTV        ++PS
Sbjct: 468 MNYGPGAGLGSRVKWPGYQVFNESTQAKNYTVAQFIEGNLWLPS 511


>sp|P41510|PME_BRANA Probable pectinesterase OS=Brassica napus
           GN=BP19 PE=2 SV=1
          Length = 584

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +2

Query: 5   NNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFI-PSDIPIKASL 157
           N GPGA+  ARVPW  +  A S +E  ++TV +     ++I  +++P++  L
Sbjct: 535 NRGPGANTAARVPWAKM--AKSAAEVERFTVANWLTPANWIQEANVPVQLGL 584
tr_hit_id Q570I2
Definition tr|Q570I2|Q570I2_ARATH Pectinesterase like protein OS=Arabidopsis thaliana
Align length 51
Score (bit) 50.1
E-value 6.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947133|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_O15, 5'
         (272 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q570I2|Q570I2_ARATH Pectinesterase like protein OS=Arabidopsi...    50   6e-05
tr|O22149|O22149_ARATH Putative pectinesterase (At2g45220/F4L23....    50   6e-05
tr|Q9SKX2|Q9SKX2_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    50   7e-05
tr|Q9LYT5|Q9LYT5_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    49   9e-05
tr|A9NW72|A9NW72_PICSI Pectinesterase OS=Picea sitchensis PE=2 SV=1    49   9e-05
tr|A7PYC6|A7PYC6_VITVI Pectinesterase OS=Vitis vinifera GN=GSVIV...    48   2e-04
tr|A7PFV8|A7PFV8_VITVI Pectinesterase OS=Vitis vinifera GN=GSVIV...    48   2e-04
tr|A5BFN1|A5BFN1_VITVI Putative uncharacterized protein OS=Vitis...    48   2e-04
tr|A7PFV6|A7PFV6_VITVI Pectinesterase OS=Vitis vinifera GN=GSVIV...    48   3e-04
tr|A5B8K9|A5B8K9_VITVI Putative uncharacterized protein OS=Vitis...    47   4e-04
tr|A7PFV3|A7PFV3_VITVI Pectinesterase OS=Vitis vinifera GN=GSVIV...    47   6e-04
tr|A5BWW2|A5BWW2_VITVI Putative uncharacterized protein OS=Vitis...    47   6e-04
tr|Q8LA06|Q8LA06_ARATH Pectinesterase OS=Arabidopsis thaliana PE...    46   0.001
tr|Q0WWC7|Q0WWC7_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    46   0.001
tr|Q9STY3|Q9STY3_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    45   0.002
tr|Q6K7E3|Q6K7E3_ORYSJ Pectinesterase OS=Oryza sativa subsp. jap...    45   0.002
tr|Q0DX02|Q0DX02_ORYSJ Pectinesterase OS=Oryza sativa subsp. jap...    45   0.002
tr|A7PFV5|A7PFV5_VITVI Pectinesterase OS=Vitis vinifera GN=GSVIV...    45   0.002
tr|A3AC07|A3AC07_ORYSJ Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A5YW26|A5YW26_HUMLU Pectin methylesterase (Fragment) OS=Humul...    45   0.002
tr|Q8RVX1|Q8RVX1_SESRO Pectinesterase OS=Sesbania rostrata GN=pm...    44   0.004
tr|Q8H223|Q8H223_9ROSI Putative pectin methylesterase (Fragment)...    44   0.004
tr|Q27U81|Q27U81_EUCGG Pectin methylesterase (Fragment) OS=Eucal...    44   0.004
tr|Q94FS6|Q94FS6_LINUS Putative pectin methylesterase LuPME1 OS=...    44   0.005
tr|Q9LXK7|Q9LXK7_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    42   0.012
tr|A7P3R9|A7P3R9_VITVI Pectinesterase OS=Vitis vinifera GN=GSVIV...    42   0.012
tr|A5BNB1|A5BNB1_VITVI Putative uncharacterized protein OS=Vitis...    42   0.012
tr|Q9FK05|Q9FK05_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    42   0.015
tr|Q9FF78|Q9FF78_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    42   0.015
tr|Q84W31|Q84W31_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    42   0.015

>tr|Q570I2|Q570I2_ARATH Pectinesterase like protein OS=Arabidopsis
           thaliana GN=At2g45220 PE=3 SV=1
          Length = 83

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 24/51 (47%), Positives = 30/51 (58%)
 Frame = +2

Query: 5   NNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIPSDIPIKASL 157
           N GPGAS + RV W G     S SEASK+TV +     S+IPS +P  + L
Sbjct: 33  NTGPGASTSGRVTWPGFRVLGSASEASKFTVGTFLAGGSWIPSSVPFTSGL 83


>tr|O22149|O22149_ARATH Putative pectinesterase (At2g45220/F4L23.27)
           OS=Arabidopsis thaliana GN=At2g45220 PE=2 SV=2
          Length = 511

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 24/51 (47%), Positives = 30/51 (58%)
 Frame = +2

Query: 5   NNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIPSDIPIKASL 157
           N GPGAS + RV W G     S SEASK+TV +     S+IPS +P  + L
Sbjct: 461 NTGPGASTSGRVTWPGFRVLGSASEASKFTVGTFLAGGSWIPSSVPFTSGL 511


>tr|Q9SKX2|Q9SKX2_ARATH Pectinesterase OS=Arabidopsis thaliana
           GN=At2g43050 PE=2 SV=1
          Length = 518

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 21/43 (48%), Positives = 30/43 (69%)
 Frame = +2

Query: 5   NNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIPS 133
           N+GPG+SV+ RV W G HP+L+ +EA K+TV S      ++PS
Sbjct: 465 NSGPGSSVSGRVKWSGCHPSLTVTEAEKFTVASFIDGNIWLPS 507


>tr|Q9LYT5|Q9LYT5_ARATH Pectinesterase OS=Arabidopsis thaliana
           GN=F17J16_60 PE=2 SV=1
          Length = 529

 Score = 49.3 bits (116), Expect = 9e-05
 Identities = 21/43 (48%), Positives = 30/43 (69%)
 Frame = +2

Query: 5   NNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIPS 133
           N+GPG+SV+ RV W G HPAL+ +EA  +TV+      S++PS
Sbjct: 477 NSGPGSSVSGRVSWAGYHPALTLTEAQGFTVSGFIDGNSWLPS 519


>tr|A9NW72|A9NW72_PICSI Pectinesterase OS=Picea sitchensis PE=2 SV=1
          Length = 571

 Score = 49.3 bits (116), Expect = 9e-05
 Identities = 23/44 (52%), Positives = 27/44 (61%)
 Frame = +2

Query: 2   MNNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIPS 133
           MN GPGA   +RV W G H   ST+EASKYTV       S++PS
Sbjct: 516 MNTGPGAGTASRVNWPGYHRITSTAEASKYTVAEFISGNSWLPS 559


>tr|A7PYC6|A7PYC6_VITVI Pectinesterase OS=Vitis vinifera
           GN=GSVIVT00026388001 PE=3 SV=1
          Length = 513

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +2

Query: 2   MNNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIP-SDIPIKASL 157
           MN GPG+S + RV W G H   S+SEASK+TV +     S++P +++P  + L
Sbjct: 461 MNTGPGSSTSNRVNWAGYHVITSSSEASKFTVGNFIAGNSWLPATNVPFTSGL 513


>tr|A7PFV8|A7PFV8_VITVI Pectinesterase OS=Vitis vinifera
           GN=GSVIVT00017269001 PE=3 SV=1
          Length = 512

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +2

Query: 2   MNNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIPS-DIPIKASL 157
           MN GPG+S + RV W G H   S++EA+K+TV +     S++PS ++P  + L
Sbjct: 460 MNTGPGSSTSGRVDWAGYHVITSSTEAAKFTVGNFISGNSWLPSTNVPFTSGL 512


>tr|A5BFN1|A5BFN1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043176 PE=4 SV=1
          Length = 497

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +2

Query: 2   MNNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIPS-DIPIKASL 157
           MN GPG+S + RV W G H   S++EA+K+TV +     S++PS ++P  + L
Sbjct: 445 MNTGPGSSTSGRVDWAGYHVITSSTEAAKFTVGNFISGNSWLPSTNVPFTSGL 497


>tr|A7PFV6|A7PFV6_VITVI Pectinesterase OS=Vitis vinifera
           GN=GSVIVT00017266001 PE=3 SV=1
          Length = 513

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +2

Query: 2   MNNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIPS-DIPIKASL 157
           MN GPG+S + RV W G H   S++EA+K+TV +     S++PS ++P  + L
Sbjct: 461 MNTGPGSSTSGRVNWTGYHVITSSTEAAKFTVGNFISGNSWLPSTNVPFTSGL 513


>tr|A5B8K9|A5B8K9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_000562 PE=4 SV=1
          Length = 513

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = +2

Query: 2   MNNGPGASVTARVPWEGVHPALSTSEASKYTVNSVFPNVSFIPS-DIPIKASL 157
           MN GPG+S + RV W G H   S++EA+K+TV +     S++PS  +P  + L
Sbjct: 461 MNTGPGSSTSGRVDWAGYHVITSSTEAAKFTVGNFISGNSWLPSTKVPFTSGL 513