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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947105
Clone id YMU02A01NGRL0014_M24
Library
Length 380
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_M24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GATGGCAGTTGCAGATCAAGAAAGCCGCTGGTGCTCTATGGTGATGATGATGATGTGCAG
AGACTGTTAAGAGAAGGCGCCATGGAAGCTGTGGAAAAGCAATCAGTAAACCCGTATCTG
GATTTTAGGGAGAGTATGTTGCAGATGATGGTTGCGGTGTGCTGCGGCAGGAGGAGCCAA
GAAGCAATTGTCGTGTCTTGTGTGAATGATGACAACACGAGTATAGAGGATGTTCTGTAT
TGCTACTTGCGGCTCAACTCTATGGAGCTGTATGAGCTCATCACACAAGCTTTCTCTGAC
ACTTGCTCTGATTTGCTAGCAATGGAATAGTGAGCTAATCCTTCTAACGAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P04020
Definition sp|P04020|VE7_HPV11 Protein E7 OS=Human papillomavirus type 11
Align length 55
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947105|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_M24, 5'
         (349 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04020|VE7_HPV11 Protein E7 OS=Human papillomavirus type 11 G...    30   3.7  
sp|Q5R4L1|PLK2_PONAB Serine/threonine-protein kinase PLK2 OS=Pon...    30   4.8  
sp|Q555I8|KIF9_DICDI Kinesin-related protein 9 OS=Dictyostelium ...    29   6.3  
sp|Q6Q7X9|KLH31_DANRE Kelch-like protein 31 OS=Danio rerio GN=kl...    29   6.3  

>sp|P04020|VE7_HPV11 Protein E7 OS=Human papillomavirus type 11
           GN=E7 PE=1 SV=1
          Length = 98

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 73  EGAMEAVEKQSVNPYLDFRESMLQMMVAVCCGRRSQEAIVVSCVNDDNTSIEDVL 237
           E  ++ V+KQ   P     +     ++  CCG  S   +VV C + D   ++D+L
Sbjct: 34  EDEVDKVDKQDAQPLTQHYQ-----ILTCCCGCDSNVRLVVECTDGDIRQLQDLL 83


>sp|Q5R4L1|PLK2_PONAB Serine/threonine-protein kinase PLK2 OS=Pongo
           abelii GN=PLK2 PE=3 SV=1
          Length = 685

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 174 PPAAAHRNHHLQHTLPKI 121
           PPAAAH +HH  H+ P+I
Sbjct: 52  PPAAAHHHHHHSHSGPEI 69


>sp|Q555I8|KIF9_DICDI Kinesin-related protein 9 OS=Dictyostelium
           discoideum GN=kif9 PE=2 SV=1
          Length = 1222

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +1

Query: 76  GAMEAVEKQSVNPYLDFRESMLQMMVAVCCGRRSQEAIVVSCVNDDNTSI 225
           G +E + K S   ++ +R+S L  ++  C G  S+  ++V+C + ++ S+
Sbjct: 655 GVIEDMSKNS--KHVRYRDSKLTQLLQQCFGGNSKTCLIVNCSSSNHESV 702


>sp|Q6Q7X9|KLH31_DANRE Kelch-like protein 31 OS=Danio rerio
           GN=klhl31 PE=2 SV=1
          Length = 635

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -3

Query: 299 SEKACVMSSYSSIELSRK*QYRTSSILVLSSFTQDTTIASWLLLPQHTATIICN 138
           S K   +S  S + L+    Y  S  L LS +T  +TI++ LLL  HT   +C+
Sbjct: 108 SLKKIELSDLSPVGLATVITYAYSGKLTLSLYTIGSTISAALLLQIHTLVKMCS 161
tr_hit_id B6SLZ3
Definition tr|B6SLZ3|B6SLZ3_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 88
Score (bit) 50.1
E-value 6.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947105|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_M24, 5'
         (349 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6SLZ3|B6SLZ3_MAIZE Putative uncharacterized protein OS=Zea m...    50   6e-05
tr|Q0WSS3|Q0WSS3_ARATH Putative uncharacterized protein At3g5252...    48   2e-04
tr|A9T2D3|A9T2D3_PHYPA Predicted protein OS=Physcomitrella paten...    48   2e-04
tr|A7P7D5|A7P7D5_VITVI Chromosome chr9 scaffold_7, whole genome ...    48   2e-04
tr|Q3EAL1|Q3EAL1_ARATH Uncharacterized protein At3g52525.1 OS=Ar...    47   6e-04
tr|B4FI23|B4FI23_MAIZE Putative uncharacterized protein OS=Zea m...    47   6e-04
tr|B7FMT7|B7FMT7_MEDTR Putative uncharacterized protein OS=Medic...    46   8e-04
tr|A9SGX0|A9SGX0_PHYPA Predicted protein OS=Physcomitrella paten...    46   8e-04
tr|A7PP66|A7PP66_VITVI Chromosome chr8 scaffold_23, whole genome...    45   0.001
tr|A9SC83|A9SC83_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|B3H6R4|B3H6R4_ARATH Uncharacterized protein At2g36026.1 OS=Ar...    45   0.002
tr|A9TY61|A9TY61_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|Q9LVL4|Q9LVL4_ARATH Gb|AAB63094.1 (Ovate family protein) OS=A...    44   0.004
tr|B6SHS0|B6SHS0_MAIZE Plant-specific domain TIGR01568 family pr...    44   0.004
tr|Q94CV1|Q94CV1_ORYSJ cDNA clone:002-115-D10, full insert seque...    44   0.005
tr|A2WX95|A2WX95_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.005
tr|Q9FMS7|Q9FMS7_ARATH Gb|AAD12216.1 OS=Arabidopsis thaliana GN=...    43   0.007
tr|Q5ZEA2|Q5ZEA2_ORYSJ cDNA clone:001-117-G11, full insert seque...    43   0.007
tr|Q5KQA2|Q5KQA2_ORYSJ Putative uncharacterized protein OSJNOa01...    43   0.007
tr|A2Y1P0|A2Y1P0_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.007
tr|A2WST3|A2WST3_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.007
tr|A7NY20|A7NY20_VITVI Chromosome chr6 scaffold_3, whole genome ...    43   0.009
tr|O23341|O23341_ARATH Putative uncharacterized protein dl3470w ...    42   0.015
tr|O04351|O04351_ARATH Putative uncharacterized protein At2g3040...    42   0.015
tr|B6U561|B6U561_MAIZE Plant-specific domain TIGR01568 family pr...    42   0.015
tr|B6SI20|B6SI20_MAIZE Ovate protein OS=Zea mays PE=2 SV=1             42   0.015
tr|A9RTP7|A9RTP7_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.015
tr|Q5W6T7|Q5W6T7_ORYSJ Os05g0324600 protein OS=Oryza sativa subs...    42   0.020
tr|B8AWM6|B8AWM6_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.020
tr|Q94JB6|Q94JB6_ORYSJ Putative uncharacterized protein P0710A02...    41   0.034

>tr|B6SLZ3|B6SLZ3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 256

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 33/88 (37%), Positives = 48/88 (54%)
 Frame = +1

Query: 40  GDDDDVQRLLREGAMEAVEKQSVNPYLDFRESMLQMMVAVCCGRRSQEAIVVSCVNDDNT 219
           G + D  + +  GA  AV   S  PY DFR SM +M+ A   G  S  A   +    D  
Sbjct: 127 GSEADEPKAVVRGAGVAVATLSAAPYEDFRRSMREMVEAAA-GTGSGGAAAAAV---DWD 182

Query: 220 SIEDVLYCYLRLNSMELYELITQAFSDT 303
            +E++L+CYLRLN   +++ I +AF+DT
Sbjct: 183 FMEELLFCYLRLNDRAVHKDILRAFTDT 210


>tr|Q0WSS3|Q0WSS3_ARATH Putative uncharacterized protein At3g52525
           (Fragment) OS=Arabidopsis thaliana GN=At3g52525 PE=2
           SV=1
          Length = 128

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 30/82 (36%), Positives = 46/82 (56%)
 Frame = +1

Query: 70  REGAMEAVEKQSVNPYLDFRESMLQMMVAVCCGRRSQEAIVVSCVNDDNTSIEDVLYCYL 249
           ++G  E VEK S +PYLDFR+SMLQM++         E  + S        + ++L C+L
Sbjct: 32  KKGLPEFVEKDSDDPYLDFRQSMLQMIL---------ENQIYS-----KDELRELLQCFL 77

Query: 250 RLNSMELYELITQAFSDTCSDL 315
            LNS   + +I +AFS+   D+
Sbjct: 78  SLNSHYHHGIIVRAFSEIWEDV 99


>tr|A9T2D3|A9T2D3_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_87111 PE=4 SV=1
          Length = 1146

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 29/74 (39%), Positives = 39/74 (52%)
 Frame = +1

Query: 88   AVEKQSVNPYLDFRESMLQMMVAVCCGRRSQEAIVVSCVNDDNTSIEDVLYCYLRLNSME 267
            A+ K S +PY DFR+SML+MM      +R  E             ++D+L C+L LN   
Sbjct: 1051 ALAKDSSDPYADFRDSMLEMMQEKNLWQRQDE-------------LQDLLLCFLHLNQPI 1097

Query: 268  LYELITQAFSDTCS 309
             + LI QAFSD  S
Sbjct: 1098 HHHLIHQAFSDVVS 1111


>tr|A7P7D5|A7P7D5_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034416001
           PE=4 SV=1
          Length = 228

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 31/84 (36%), Positives = 45/84 (53%)
 Frame = +1

Query: 49  DDVQRLLREGAMEAVEKQSVNPYLDFRESMLQMMVAVCCGRRSQEAIVVSCVNDDNTSIE 228
           +D++ +L      AV   S NPY+DFR SM +M+          EA + S    D   +E
Sbjct: 130 NDIKEVLAPHDCIAVLTNSPNPYVDFRLSMQEMI----------EARLHSHEKVDWDFME 179

Query: 229 DVLYCYLRLNSMELYELITQAFSD 300
           D+L+CYL LN  + ++ I QAF D
Sbjct: 180 DLLFCYLNLNDKDSHKYILQAFVD 203


>tr|Q3EAL1|Q3EAL1_ARATH Uncharacterized protein At3g52525.1
           OS=Arabidopsis thaliana GN=At3g52525 PE=4 SV=1
          Length = 159

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 30/79 (37%), Positives = 44/79 (55%)
 Frame = +1

Query: 79  AMEAVEKQSVNPYLDFRESMLQMMVAVCCGRRSQEAIVVSCVNDDNTSIEDVLYCYLRLN 258
           A  AVEK S +PYLDFR+SMLQM++         E  + S        + ++L C+L LN
Sbjct: 66  ASVAVEKDSDDPYLDFRQSMLQMIL---------ENQIYS-----KDELRELLQCFLSLN 111

Query: 259 SMELYELITQAFSDTCSDL 315
           S   + +I +AFS+   D+
Sbjct: 112 SHYHHGIIVRAFSEIWEDV 130


>tr|B4FI23|B4FI23_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 175

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
 Frame = +1

Query: 49  DDVQRLLREGAMEA---VEKQSVNPYLDFRESMLQMMVAVCCGRRSQEAIVVSCVNDDNT 219
           D V++L+  GA  A   V K+S NPYLDFR SM++M++    GRR      +  V     
Sbjct: 92  DSVKKLMTTGAASAGMAVVKRSSNPYLDFRSSMMEMVL----GRR------IGSVG---- 137

Query: 220 SIEDVLYCYLRLNSMELYELITQAFSD 300
           ++E++L  YL LNS   +  I  AF D
Sbjct: 138 NMEELLGSYLSLNSPRHHPAILAAFED 164


>tr|B7FMT7|B7FMT7_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 206

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 30/76 (39%), Positives = 40/76 (52%)
 Frame = +1

Query: 88  AVEKQSVNPYLDFRESMLQMMVAVCCGRRSQEAIVVSCVNDDNTSIEDVLYCYLRLNSME 267
           A+ K S NP  DFRESM++M+V        +  I  S        +ED+L CYL LNS E
Sbjct: 141 AIVKSSFNPQKDFRESMVEMIV--------ENNIRAS------KDLEDLLACYLSLNSDE 186

Query: 268 LYELITQAFSDTCSDL 315
            ++LI + F     DL
Sbjct: 187 YHDLIIKVFKQIWFDL 202


>tr|A9SGX0|A9SGX0_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_229652 PE=4 SV=1
          Length = 1111

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 27/71 (38%), Positives = 38/71 (53%)
 Frame = +1

Query: 88   AVEKQSVNPYLDFRESMLQMMVAVCCGRRSQEAIVVSCVNDDNTSIEDVLYCYLRLNSME 267
            A+ K S +PY DFR+SML+MM      +R  E             ++D+L C+L LN   
Sbjct: 1006 ALAKDSSDPYADFRDSMLEMMHEKNLWQRQDE-------------LQDLLQCFLHLNQPM 1052

Query: 268  LYELITQAFSD 300
             ++LI Q FSD
Sbjct: 1053 HHQLIHQVFSD 1063


>tr|A7PP66|A7PP66_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021531001
           PE=4 SV=1
          Length = 252

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 30/75 (40%), Positives = 44/75 (58%)
 Frame = +1

Query: 76  GAMEAVEKQSVNPYLDFRESMLQMMVAVCCGRRSQEAIVVSCVNDDNTSIEDVLYCYLRL 255
           G   AVEK S +PYLDFR SMLQM++         E  + S   DD   + ++L C+L+L
Sbjct: 102 GESMAVEKDSDDPYLDFRHSMLQMIL---------EKEIYS--KDD---LRELLNCFLQL 147

Query: 256 NSMELYELITQAFSD 300
           NS   + +I +AF++
Sbjct: 148 NSPYYHGVIVRAFTE 162


>tr|A9SC83|A9SC83_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_77394 PE=4 SV=1
          Length = 865

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 26/75 (34%), Positives = 40/75 (53%)
 Frame = +1

Query: 91  VEKQSVNPYLDFRESMLQMMVAVCCGRRSQEAIVVSCVNDDNTSIEDVLYCYLRLNSMEL 270
           V + S +PY DFRESM++M+V         + I  +C       +E++L CYL LN  E 
Sbjct: 800 VVESSYDPYNDFRESMIEMIV--------DQDIQETC------DLEELLQCYLSLNEAEY 845

Query: 271 YELITQAFSDTCSDL 315
           + +I   F+D   +L
Sbjct: 846 HNVIVDVFTDVWHEL 860