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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946883
Clone id YMU02A01NGRL0014_B03
Library
Length 610
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_B03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGAAGCAGTGGTATCAACGCAG
AGTGGCCATTACGGCCGGAAGGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGA
TGAGGCTGCACGCTTACGACAATGTTCGCAATCTACCAGCTCATTAGCTGGGTGGGTCTC
ACGCGGCTTCTCTGGAAATGGTCAGCTGCGTGCTTGCACCTGTCTCCCAATTTCTCCTGA
AGCACAATTTAGAATCAGGTGGTCTCTCAGTGTGTCCAGTTCGCCCTCACTCCTACCTCT
TCTTTTGCTTGACAAGGTAACTTTGGAGGCTGCTGCCCCATCTACATATACATGCAGAAC
TCCACGTCTACCTAACTTATCAAATGCTTTGAAATCTGATGCACAACTGGAGGATGTTGC
TCATTTGAAACAAGTTGAAAGCTTAACAATATTAAGGGCAAGGGAAAAGAGTGTGTCAGA
TGGTCGTTCAACTTATGTGGGTGTAGAAGGTGAACTTGAACAAGTTCATGAACCTCACAT
CAAGAGTGTTGACATGAAGAGACCCTCTTTTTTTGGTTGGCTGTTTCATCAAAAAGGACA
GTTGGACTAG
■■Homology search results ■■ -
sp_hit_id Q47125
Definition sp|Q47125|CE10_ECOLX Colicin-10 OS=Escherichia coli
Align length 74
Score (bit) 32.7
E-value 0.93
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946883|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_B03, 5'
         (492 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q47125|CE10_ECOLX Colicin-10 OS=Escherichia coli GN=cta PE=3 ...    33   0.93 
sp|Q47500|CE05_ECOLX Colicin-5 OS=Escherichia coli GN=cfa PE=3 SV=1    33   0.93 
sp|P24279|MCM3_YEAST DNA replication licensing factor MCM3 OS=Sa...    31   2.7  
sp|O35615|FOG1_MOUSE Zinc finger protein ZFPM1 OS=Mus musculus G...    30   4.5  
sp|Q9BS34|ZN670_HUMAN Zinc finger protein 670 OS=Homo sapiens GN...    30   5.9  
sp|Q6DFF9|MABP1_XENLA Mitogen-activated protein kinase-binding p...    30   5.9  
sp|Q6NS57|MABP1_MOUSE Mitogen-activated protein kinase-binding p...    30   5.9  
sp|O60336|MABP1_HUMAN Mitogen-activated protein kinase-binding p...    30   5.9  
sp|Q9PKW4|DPO3B_CHLMU DNA polymerase III subunit beta OS=Chlamyd...    30   6.0  
sp|Q47502|CEAK_ECOLX Colicin-K OS=Escherichia coli GN=cka PE=3 SV=1    30   6.0  

>sp|Q47125|CE10_ECOLX Colicin-10 OS=Escherichia coli GN=cta PE=3
           SV=1
          Length = 490

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 24/74 (32%), Positives = 33/74 (44%)
 Frame = +1

Query: 256 NLSNALKSDAQLEDVAHLKQVESLTILRAREKSVSDGRSTYVGVEGELEQVHEPHIKSVD 435
           N  ++L  + +  +VA  K  E+   L   E  V   ++    V GELE       KSVD
Sbjct: 191 NRQDSLDEEHRAVEVAEKKLAEAKAELAKAESDVQSKQAIVSRVAGELENAQ----KSVD 246

Query: 436 MKRPSFFGWLFHQK 477
           +K   F GW   QK
Sbjct: 247 VKVTGFPGWRDVQK 260


>sp|Q47500|CE05_ECOLX Colicin-5 OS=Escherichia coli GN=cfa PE=3 SV=1
          Length = 490

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 24/74 (32%), Positives = 33/74 (44%)
 Frame = +1

Query: 256 NLSNALKSDAQLEDVAHLKQVESLTILRAREKSVSDGRSTYVGVEGELEQVHEPHIKSVD 435
           N  ++L  + +  +VA  K  E+   L   E  V   ++    V GELE       KSVD
Sbjct: 191 NRQDSLDEEHRAVEVAEKKLAEAKAELAKAESDVQSKQAIVSRVAGELENAQ----KSVD 246

Query: 436 MKRPSFFGWLFHQK 477
           +K   F GW   QK
Sbjct: 247 VKVTGFPGWRDVQK 260


>sp|P24279|MCM3_YEAST DNA replication licensing factor MCM3
           OS=Saccharomyces cerevisiae GN=MCM3 PE=1 SV=1
          Length = 971

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 241 TPRLPNLSNALKSDAQLEDVAHLKQVESLTILRAREKSVS 360
           TPRLPN+S+A + D Q + V     VE  TI   R   +S
Sbjct: 868 TPRLPNVSSAGQDDEQQQSVISFDNVEPGTISTGRLSLIS 907


>sp|O35615|FOG1_MOUSE Zinc finger protein ZFPM1 OS=Mus musculus
           GN=Zfpm1 PE=1 SV=1
          Length = 995

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 152 LRDHLILNCASGE-IGRQVQARS*PFPEKPRETHPANELVDCEHCRKRAAS 3
           L+ HL+  CAS +  G  V A      EKP+ET+P   +     CRK   S
Sbjct: 270 LQAHLLYYCASRQRAGSPVSATE----EKPKETYPNERVCPFPQCRKSCPS 316


>sp|Q9BS34|ZN670_HUMAN Zinc finger protein 670 OS=Homo sapiens
           GN=ZNF670 PE=1 SV=1
          Length = 389

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
 Frame = -2

Query: 326 KLSTCFK*ATSSSCASDFKAFDKLGRRGVLHV---YVDGAAASKVTLSSKRRGRSEGELD 156
           K+ST  K    S C   F     L R  + H+     +     +     K+ G++   L 
Sbjct: 95  KVSTGVKPCECSVCGKVFICHSALHRHILSHIGNKLFECEECPEKLYHCKQCGKAFISLT 154

Query: 155 TLRDHLILNCASGEIGRQVQARS*PFP---EKPRETHPANELVDCEHCRK 15
           ++  H++ + ++G     V  +   FP   + P+ T+   +   C+HC K
Sbjct: 155 SVDRHMVTHTSNGPYKGPVYEKPFDFPSVFQMPQSTYTGEKTYKCKHCDK 204


>sp|Q6DFF9|MABP1_XENLA Mitogen-activated protein kinase-binding
           protein 1 OS=Xenopus laevis GN=mapkbp1 PE=2 SV=1
          Length = 1580

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 22/62 (35%), Positives = 31/62 (50%)
 Frame = -2

Query: 299 TSSSCASDFKAFDKLGRRGVLHVYVDGAAASKVTLSSKRRGRSEGELDTLRDHLILNCAS 120
           T+ S + D   F   G R V   Y+D A +SKV  +    GRS G L  LR++   + A 
Sbjct: 183 TAVSFSEDSSYFVTAGNRHVKFWYLDEAKSSKVNSTIPLLGRS-GLLGELRNNFFTDVAC 241

Query: 119 GE 114
           G+
Sbjct: 242 GK 243


>sp|Q6NS57|MABP1_MOUSE Mitogen-activated protein kinase-binding
           protein 1 OS=Mus musculus GN=Mapkbp1 PE=1 SV=1
          Length = 1503

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -2

Query: 299 TSSSCASDFKAFDKLGRRGVLHVYVDGAAASKVTLSSKRRGRSEGELDTLRDHLILNCAS 120
           T+ S + D   F   G R +   Y+D +  SKV  +    GRS G L  LR++L  + A 
Sbjct: 182 TAVSFSEDCSYFVTAGNRHIKFWYLDDSKTSKVNATVPLLGRS-GLLGELRNNLFTDVAC 240

Query: 119 G 117
           G
Sbjct: 241 G 241


>sp|O60336|MABP1_HUMAN Mitogen-activated protein kinase-binding
           protein 1 OS=Homo sapiens GN=MAPKBP1 PE=2 SV=4
          Length = 1514

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -2

Query: 299 TSSSCASDFKAFDKLGRRGVLHVYVDGAAASKVTLSSKRRGRSEGELDTLRDHLILNCAS 120
           T+ S + D   F   G R +   Y+D +  SKV  +    GRS G L  LR++L  + A 
Sbjct: 181 TAVSFSEDCSYFVTAGNRHIKFWYLDDSKTSKVNATVPLLGRS-GLLGELRNNLFTDVAC 239

Query: 119 G 117
           G
Sbjct: 240 G 240


>sp|Q9PKW4|DPO3B_CHLMU DNA polymerase III subunit beta OS=Chlamydia
           muridarum GN=dnaN PE=3 SV=1
          Length = 366

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
 Frame = +1

Query: 244 PRLPNLSNALKSDAQLEDVAHLKQVESLTILRAREK--------SVSDGRSTYVGVEGEL 399
           P LP++ NAL+     E +  + Q  S  + R   +        S+S+G  T VG +G+ 
Sbjct: 116 PMLPDMQNALRFTLDSEQLKDMFQRTSFAVSREESRYVLTGVLLSISNGTMTVVGTDGKR 175

Query: 400 EQVHEPHIKSVDMKRPSFFG 459
               + +I S+D   PSF G
Sbjct: 176 LAKIDTNI-SLD---PSFSG 191


>sp|Q47502|CEAK_ECOLX Colicin-K OS=Escherichia coli GN=cka PE=3 SV=1
          Length = 548

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 23/69 (33%), Positives = 29/69 (42%)
 Frame = +1

Query: 271 LKSDAQLEDVAHLKQVESLTILRAREKSVSDGRSTYVGVEGELEQVHEPHIKSVDMKRPS 450
           L  + Q    A  +  E+   L   E  V   ++T   V GELE       KSVD+K   
Sbjct: 254 LNEEKQAVAEAEKRLAEAKAELAKAESDVQSKQATVSRVAGELENAQ----KSVDVKVTG 309

Query: 451 FFGWLFHQK 477
           F GW   QK
Sbjct: 310 FPGWRDVQK 318
tr_hit_id A1SAQ6
Definition tr|A1SAQ6|A1SAQ6_SHEAM HlyD family secretion protein OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Align length 90
Score (bit) 37.4
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946883|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_B03, 5'
         (492 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A1SAQ6|A1SAQ6_SHEAM HlyD family secretion protein OS=Shewanel...    37   0.38 
tr|B1S5T8|B1S5T8_9BIFI Putative uncharacterized protein OS=Bifid...    35   2.5  
tr|A7A964|A7A964_BIFAD Putative uncharacterized protein OS=Bifid...    35   2.5  

>tr|A1SAQ6|A1SAQ6_SHEAM HlyD family secretion protein OS=Shewanella
           amazonensis (strain ATCC BAA-1098 / SB2B) GN=Sama_3260
           PE=4 SV=1
          Length = 460

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 23/90 (25%), Positives = 47/90 (52%)
 Frame = -2

Query: 359 DTLFSLALNIVKLSTCFK*ATSSSCASDFKAFDKLGRRGVLHVYVDGAAASKVTLSSKRR 180
           + +FSL  N++++ T     T S  ASD++   ++ ++ +  ++ D  +A K  L ++++
Sbjct: 112 EEVFSLQANVIRMRTELNSITVSDMASDWREQVRIVKQEL--IFPDALSAQKAELVARQQ 169

Query: 179 GRSEGELDTLRDHLILNCASGEIGRQVQAR 90
               G LD L + L +      + RQ+Q R
Sbjct: 170 AEYNGRLDNLENQLEI------LARQIQQR 193


>tr|B1S5T8|B1S5T8_9BIFI Putative uncharacterized protein
           OS=Bifidobacterium dentium ATCC 27678 GN=BIFDEN_01443
           PE=4 SV=1
          Length = 1050

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +1

Query: 247 RLPNLSNALKSDAQLEDVAHLKQVESLTILRAREKSVSDGRSTYVGVEGELEQVHEPH 420
           R+P L +  + DA L      K  + L+ +R+REKS+S GR        +LE   E H
Sbjct: 673 RIPMLMDIARRDASLVYTMAAKNDDYLSFVRSREKSLSRGRHATASYLEQLEPTSEVH 730


>tr|A7A964|A7A964_BIFAD Putative uncharacterized protein
           OS=Bifidobacterium adolescentis L2-32 GN=BIFADO_02409
           PE=4 SV=1
          Length = 1055

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = +1

Query: 247 RLPNLSNALKSDAQLEDVAHLKQVESLTILRAREKSVSDGRSTYVGVEGELEQVHEPH 420
           R+P L +  + DA L      K  + L+ +R+REKS+S G++  V    +LE   + H
Sbjct: 678 RIPMLMDFARRDASLVFTMASKNDDYLSFVRSREKSLSRGKNATVSYLEQLESTSDAH 735