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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946829
Clone id YMU02A01NGRL0013_O01
Library
Length 455
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_O01. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGTTATAAAATAAAACTGATAAGCACTGTGCACCTGTGGTGAGAAAGAGTGGGAGCGATG
GAGAAAATGTTTGGGCCTGCGTACGCTGGGGACCCTGGCGTTCCCCACTCTGGCAAAGAT
GGGTTTGCTAATCTCTTCTGGGGCTGCGTCACCTTCTCTGCCATTTCCTGGTTCAACCCA
TATTACTGGCAGTACACCAACTGCTACAACTGGCATGACTTGACCATGGTGTGTGAGAAT
CACAGGATGAAAAATGTCATCAAGGAGAACAAGCTATACTAGCCTCTGTGGAATGAGTAT
ATGCCGAAGTTGGTGCGAGACAGTTATTTTCTGAATTGGTCAGACTATTTCCCATAGTTT
ATCTGAACTGTTTCCATGACTCACTGCCTTCTTGGAAGTTTATGAGGTTGGCACATTCTG
GGTGATTTTCAAGCATGAGCAGGTTTTTTGGTTTT
■■Homology search results ■■ -
sp_hit_id P33154
Definition sp|P33154|PR1_ARATH Pathogenesis-related protein 1 OS=Arabidopsis thaliana
Align length 59
Score (bit) 31.2
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946829|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_O01, 5'
         (441 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P33154|PR1_ARATH Pathogenesis-related protein 1 OS=Arabidopsi...    31   2.0  
sp|P04181|OAT_HUMAN Ornithine aminotransferase, mitochondrial OS...    31   2.6  
sp|Q0IIC4|ZMAT3_BOVIN Zinc finger matrin-type protein 3 OS=Bos t...    31   2.6  
sp|Q50319|SYM_MYCPU Methionyl-tRNA synthetase OS=Mycoplasma pulm...    30   3.4  
sp|Q4P0P3|MED14_USTMA Mediator of RNA polymerase II transcriptio...    30   4.4  
sp|P21436|ENV_MLVHO Envelope glycoprotein OS=Hortulanus murine l...    30   4.5  
sp|Q9QYF3|MYO5A_RAT Myosin-Va OS=Rattus norvegicus GN=Myo5a PE=2...    29   9.8  

>sp|P33154|PR1_ARATH Pathogenesis-related protein 1 OS=Arabidopsis
           thaliana GN=At2g14610 PE=1 SV=1
          Length = 161

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +1

Query: 37  W*ERVGAMEKMFGPAYAGDPGVPHSGKDGFANLFWGCVTFSAISWFNPYYWQYTNCYNW 213
           W ERV A  + +     G+  + HSG     NL WG    S +S  N +  +  N YN+
Sbjct: 51  WDERVAAYARSYAEQLRGNCRLIHSGGPYGENLAWGSGDLSGVSAVNMWVSEKAN-YNY 108


>sp|P04181|OAT_HUMAN Ornithine aminotransferase, mitochondrial
           OS=Homo sapiens GN=OAT PE=1 SV=1
          Length = 439

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 44  KEWERWRKCLGLRTLGTLAFPT 109
           K+W+ W+ CL LR  G LA PT
Sbjct: 386 KDWDAWKVCLRLRDNGLLAKPT 407


>sp|Q0IIC4|ZMAT3_BOVIN Zinc finger matrin-type protein 3 OS=Bos
           taurus GN=ZMAT3 PE=2 SV=1
          Length = 289

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 174 EPGNGREGDAAPEEISKPIFARVGNARVPSVRRPK-HFLHRSH 49
           EP  G E D A EE+ KP++ ++ N  + S ++ + H+  ++H
Sbjct: 52  EPPKGGEQDTALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNH 94


>sp|Q50319|SYM_MYCPU Methionyl-tRNA synthetase OS=Mycoplasma
           pulmonis GN=metG PE=3 SV=2
          Length = 509

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 181 YYWQYTNCYNWHDLTMVCENHRMKNVIKENKLY*PLWNEYMPKLVRDSYFLN 336
           Y  +Y   Y+  D   + E   +K   K+NK + P+ N  + K+  +SYF N
Sbjct: 118 YLDKYVGLYSVSDEEFLTETQALK---KDNKFFHPVSNHELIKIEEESYFFN 166


>sp|Q4P0P3|MED14_USTMA Mediator of RNA polymerase II transcription
           subunit 14 OS=Ustilago maydis GN=RGR1 PE=3 SV=1
          Length = 1439

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +2

Query: 44  KEWERWRKCLGLRTLGTLAF--PTLAKMGL-LISSGAASPSLPFP 169
           +EWER    LGLR++  LA     LAK+G   ++S  A+P L  P
Sbjct: 735 QEWERMASYLGLRSVRKLALRPQDLAKLGASTLASAEAAPQLFLP 779


>sp|P21436|ENV_MLVHO Envelope glycoprotein OS=Hortulanus murine
           leukemia virus GN=env PE=1 SV=1
          Length = 666

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
 Frame = +1

Query: 7   KIKLISTVHLW*ERVGAMEKMFGPAYAGDPGVPHSGKDGFANLFWGCVTFSAISWFNPYY 186
           ++KL+ T H   +          P +A + G    G D F    WGC T     W     
Sbjct: 133 RLKLVLTTHHLNQGFYVCPGPHRPRHARNCG----GPDDFYCAHWGCETTGQAYWKPSSS 188

Query: 187 WQY---TNCYNWHDLTMVCENH 243
           W Y   +N  +  D T  C+N+
Sbjct: 189 WDYIRVSNNASSSDATTACKNN 210


>sp|Q9QYF3|MYO5A_RAT Myosin-Va OS=Rattus norvegicus GN=Myo5a PE=2 SV=1
          Length = 1828

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 173  NQEMAEKVTQPQKRLANPSLPEWGTPGSPAY 81
            N+++  ++ + +K L+  S PE   PG+PAY
Sbjct: 1215 NKKLKNELNELRKALSEKSAPEVNAPGAPAY 1245
tr_hit_id A7PT72
Definition tr|A7PT72|A7PT72_VITVI Chromosome chr8 scaffold_29, whole genome shotgun sequence OS=Vitis vinifera
Align length 99
Score (bit) 121.0
E-value 2.0e-26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946829|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_O01, 5'
         (441 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PT72|A7PT72_VITVI Chromosome chr8 scaffold_29, whole genome...   121   2e-26
tr|A9NZ45|A9NZ45_PICSI Putative uncharacterized protein OS=Picea...   110   5e-23
tr|A9PEF9|A9PEF9_POPTR Putative uncharacterized protein OS=Popul...   108   1e-22
tr|A9S548|A9S548_PHYPA Predicted protein OS=Physcomitrella paten...   107   4e-22
tr|Q6IDB3|Q6IDB3_ARATH At3g09860 (Putative uncharacterized prote...   106   7e-22
tr|Q9SF88|Q9SF88_ARATH F8A24.9 protein OS=Arabidopsis thaliana G...    71   3e-11
tr|B8AL51|B8AL51_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.83 
tr|Q10HR9|Q10HR9_ORYSJ Os03g0578200 protein OS=Oryza sativa subs...    36   1.1  
tr|Q24YL6|Q24YL6_DESHY Putative uncharacterized protein OS=Desul...    34   3.1  
tr|A6BEV5|A6BEV5_9FIRM Putative uncharacterized protein OS=Dorea...    34   3.2  
tr|B8B1D8|B8B1D8_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.4  
tr|P92050|P92050_PERAM Lectin-related protein (Fragment) OS=Peri...    33   5.4  
tr|A3XME9|A3XME9_9FLAO Putative outer membrane protein, probably...    33   7.0  
tr|B6UG61|B6UG61_MAIZE Pathogenesis-related protein PR-1 OS=Zea ...    33   7.0  

>tr|A7PT72|A7PT72_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023238001
           PE=4 SV=1
          Length = 99

 Score =  121 bits (303), Expect = 2e-26
 Identities = 50/99 (50%), Positives = 66/99 (66%)
 Frame = +1

Query: 58  MEKMFGPAYAGDPGVPHSGKDGFANLFWGCVTFSAISWFNPYYWQYTNCYNWHDLTMVCE 237
           MEK FG AY GDPGVPH+  D F N++ G + FSA++W NPY WQ +N +NWHD  M+ E
Sbjct: 1   MEKYFGNAYRGDPGVPHADPDRFVNIWIGSIAFSALTWVNPYMWQLSNQFNWHDKAMLFE 60

Query: 238 NHRMKNVIKENKLY*PLWNEYMPKLVRDSYFLNWSDYFP 354
            H  K  + + + Y   WN+YM + +RDSY+ NW  YFP
Sbjct: 61  QHHWKKALAKKQPYKFKWNQYMDRDLRDSYYFNWPVYFP 99


>tr|A9NZ45|A9NZ45_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 99

 Score =  110 bits (274), Expect = 5e-23
 Identities = 48/99 (48%), Positives = 65/99 (65%)
 Frame = +1

Query: 58  MEKMFGPAYAGDPGVPHSGKDGFANLFWGCVTFSAISWFNPYYWQYTNCYNWHDLTMVCE 237
           M+K+FGPAY+GDPG+PHSGK+ F    W  V FS  S FNPYYWQ     NWHD  MV E
Sbjct: 1   MDKIFGPAYSGDPGIPHSGKEMFHTTIWAPVIFSIASIFNPYYWQSATEVNWHDWAMVHE 60

Query: 238 NHRMKNVIKENKLY*PLWNEYMPKLVRDSYFLNWSDYFP 354
           N + K  +K+ + Y P +N+ + K  R+S++ +W  +FP
Sbjct: 61  NTQRKRALKKKQPYEPKFNKLLNKPQRESFYHSWPVFFP 99


>tr|A9PEF9|A9PEF9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 98

 Score =  108 bits (270), Expect = 1e-22
 Identities = 48/99 (48%), Positives = 62/99 (62%)
 Frame = +1

Query: 58  MEKMFGPAYAGDPGVPHSGKDGFANLFWGCVTFSAISWFNPYYWQYTNCYNWHDLTMVCE 237
           MEK FG AY GDPGVPH+  D F N++ G   FS ++W NPY W  TN +NWHD   + E
Sbjct: 1   MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSILTWSNPYLWTLTNQFNWHDKAFLFE 60

Query: 238 NHRMKNVIKENKLY*PLWNEYMPKLVRDSYFLNWSDYFP 354
            +  K  +K+ + Y   WN+ M + VRDSY+ NW  YFP
Sbjct: 61  QYHWKKAMKKKEPYKFKWNK-MDREVRDSYYFNWPIYFP 98


>tr|A9S548|A9S548_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_74716 PE=4 SV=1
          Length = 165

 Score =  107 bits (266), Expect = 4e-22
 Identities = 58/148 (39%), Positives = 70/148 (47%), Gaps = 46/148 (31%)
 Frame = +1

Query: 49  VGAMEKMFGPAYAGDPGVPHSGKDGFANLFWGCVTFSAISWFNPYYWQYTN--------- 201
           V  MEKMFGPAY GDPGVPHS K+ F ++FWG V FSA S   PYYW+  N         
Sbjct: 18  VTKMEKMFGPAYTGDPGVPHSDKEAFGSIFWGSVAFSAYSIACPYYWEQCNNMFKWVSVF 77

Query: 202 -------CY------------------------------NWHDLTMVCENHRMKNVIKEN 270
                  C+                              +WHDL MV E H  K   K+ 
Sbjct: 78  TLFLDVLCFLVDFECFPGGGFRGLCVYIALTMSLDDVYRSWHDLAMVHEQHHWKRAQKKG 137

Query: 271 KLY*PLWNEYMPKLVRDSYFLNWSDYFP 354
           K Y   WN+ + K  R+SY+ NW+DYFP
Sbjct: 138 KDYEFKWNKILNKTQRESYYHNWADYFP 165


>tr|Q6IDB3|Q6IDB3_ARATH At3g09860 (Putative uncharacterized protein
           At3g09860) OS=Arabidopsis thaliana GN=At3g09860 PE=4
           SV=1
          Length = 98

 Score =  106 bits (264), Expect = 7e-22
 Identities = 48/99 (48%), Positives = 63/99 (63%)
 Frame = +1

Query: 58  MEKMFGPAYAGDPGVPHSGKDGFANLFWGCVTFSAISWFNPYYWQYTNCYNWHDLTMVCE 237
           MEK FG AY GDPGVPH+  D F N++ G   FS ++W NPY WQ +N +N+HD  M+ E
Sbjct: 1   MEKYFGNAYRGDPGVPHADADRFVNIWIGSAAFSVLTWVNPYMWQLSNQFNYHDKWMLFE 60

Query: 238 NHRMKNVIKENKLY*PLWNEYMPKLVRDSYFLNWSDYFP 354
            +  K    + + Y   WN+ +PK VRDSY+ NW  YFP
Sbjct: 61  QYHWKKARAKKQPYEFKWNK-IPKEVRDSYYYNWPVYFP 98


>tr|Q9SF88|Q9SF88_ARATH F8A24.9 protein OS=Arabidopsis thaliana
           GN=F8A24.9 PE=4 SV=1
          Length = 102

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 29/60 (48%), Positives = 39/60 (65%)
 Frame = +1

Query: 58  MEKMFGPAYAGDPGVPHSGKDGFANLFWGCVTFSAISWFNPYYWQYTNCYNWHDLTMVCE 237
           MEK FG AY GDPGVPH+  D F N++ G   FS ++W NPY WQ +N + +  L++  E
Sbjct: 1   MEKYFGNAYRGDPGVPHADADRFVNIWIGSAAFSVLTWVNPYMWQLSNQFKYFSLSLSLE 60


>tr|B8AL51|B8AL51_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12350 PE=4 SV=1
          Length = 83

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
 Frame = +1

Query: 49  VGAMEKMFGPAYAGDPGVPHSGKDGFANLFWGCVTFSAISWFN-------------PYYW 189
           +G  +  +  AY GD GVPHS        + G     A +  +             P+YW
Sbjct: 1   MGEFDDYWARAYRGDSGVPHSDSQRLVTTWTGAFALGAAACVHHHASALASNIKSLPHYW 60

Query: 190 QYTNCYNWHDLTMVCENHRMKNVIKENK 273
           Q        D+TM+ +  R K ++++ +
Sbjct: 61  Q--------DMTMMLDQKRWKKILEKKQ 80


>tr|Q10HR9|Q10HR9_ORYSJ Os03g0578200 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0578200 PE=4 SV=1
          Length = 83

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
 Frame = +1

Query: 49  VGAMEKMFGPAYAGDPGVPHSGKDGFANLFWGCVTFSAISWFN-------------PYYW 189
           +G  +  +  AY GD GVPHS        + G     A +  +             P+YW
Sbjct: 1   MGEFDDYWARAYRGDSGVPHSDPQRLVTTWTGAFALGAAACVHHHASALASNIKSLPHYW 60

Query: 190 QYTNCYNWHDLTMVCENHRMKNVIKENK 273
           Q        D+TM+ +  R K ++++ +
Sbjct: 61  Q--------DMTMMLDQKRWKKILEKKQ 80


>tr|Q24YL6|Q24YL6_DESHY Putative uncharacterized protein
           OS=Desulfitobacterium hafniense (strain Y51) GN=DSY1087
           PE=4 SV=1
          Length = 305

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 157 SAISWFNPYYWQYTNCYNWHDLTMVCENHRMKNV-IKENKLY 279
           S I WFNP  W Y   Y   D+ + C+   +KN+ I E K Y
Sbjct: 204 SCIHWFNPLSWVYLK-YFLEDMELACDEKALKNMDIDERKKY 244


>tr|A6BEV5|A6BEV5_9FIRM Putative uncharacterized protein OS=Dorea
           longicatena DSM 13814 GN=DORLON_00825 PE=4 SV=1
          Length = 70

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 44  KEWERWRKCLGLRTLGTLAFPTLAKMGLLISSGAASPSL 160
           K+W++W KC G+R + T+A   +A +G +   G     L
Sbjct: 4   KDWKKWAKCAGIRAIKTVAQTAIATIGTVTVLGQIDTKL 42