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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946704
Clone id YMU02A01NGRL0013_H09
Library
Length 206
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_H09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GCATGAACTTCTTTAGGAGGCTTCCCGCACTCTCAGACAGAATGCTCTGATGCCGTTCCT
TGTGTGTGTGCAGTAGTAGCAGTGTCTTAGATCTGTAGGATGGCATGCCAATCGTCATAT
TTACTGTAAATTTTGTATCTTGCTAGTGGCATCCATTCAATTTTTTGCTTACAACCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q7W6P7
Definition sp|Q7W6P7|SYH_BORPA Histidyl-tRNA synthetase OS=Bordetella parapertussis
Align length 37
Score (bit) 28.9
E-value 8.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946704|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_H09, 5'
         (176 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7W6P7|SYH_BORPA Histidyl-tRNA synthetase OS=Bordetella parap...    29   8.3  
sp|Q7WHN1|SYH_BORBR Histidyl-tRNA synthetase OS=Bordetella bronc...    29   8.3  

>sp|Q7W6P7|SYH_BORPA Histidyl-tRNA synthetase OS=Bordetella
           parapertussis GN=hisS PE=3 SV=2
          Length = 428

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 142 QDTKFTVNMTIGMPSYRSKTLLLLHTHKERHQSILSE 32
           QD +  +N ++G P+ R+     L  H ERHQ IL E
Sbjct: 162 QDVRLELN-SLGQPAERAAHRAALIEHLERHQDILDE 197


>sp|Q7WHN1|SYH_BORBR Histidyl-tRNA synthetase OS=Bordetella
           bronchiseptica GN=hisS PE=3 SV=1
          Length = 428

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 142 QDTKFTVNMTIGMPSYRSKTLLLLHTHKERHQSILSE 32
           QD +  +N ++G P+ R+     L  H ERHQ IL E
Sbjct: 162 QDVRLELN-SLGQPAERAAHRAALIEHLERHQDILDE 197
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946704|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_H09, 5'
         (176 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******