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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946621
Clone id YMU02A01NGRL0013_D06
Library
Length 398
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_D06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCGGACCCCAGATCAGGCAAGGCTACCCGCTGAGTTTAAGCATATCACTAAGCGGAGGAA
AAGAAACTAACAAGGATTTCCCTAGTAGCGGCGAGCGAACCGGAAAGAGCCCAGCTTGAG
AATCGCGCGGCCCCGCCGTGCGAATTGTAGTCTGGATAGGCGTCCTCTGCGACGGACCGG
GCCCAAGTCCCCTGGAAAGGGGCGTCAGAGAGGGTGAGAGCCCCGTCGAGCTCGGACCCT
GTCGCTCCACGAGGCGCCGTCGACGAGTCGGGCTGTTTGGGAATGCAGCCCTAAGTGGGT
GGTAGATTCCATCCAAGGCTAAATACGGGCAAGAGACCGATAGCGAACAAGTACCGCGAG
GGAAAGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6CQE5
Definition sp|Q6CQE5|TAR1_KLULA Protein TAR1 OS=Kluyveromyces lactis
Align length 37
Score (bit) 60.5
E-value 3.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946621|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_D06, 5'
         (369 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6CQE5|TAR1_KLULA Protein TAR1 OS=Kluyveromyces lactis GN=TAR...    60   3e-09
sp|Q8TGM6|TAR1_YEAST Protein TAR1 OS=Saccharomyces cerevisiae GN...    60   4e-09
sp|Q80UW5|MRCKG_MOUSE Serine/threonine-protein kinase MRCK gamma...    32   0.75 
sp|Q6DT37|MRCKG_HUMAN Serine/threonine-protein kinase MRCK gamma...    32   0.75 
sp|Q8BII1|PROX2_MOUSE Prospero homeobox protein 2 OS=Mus musculu...    31   1.7  
sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattu...    31   1.7  
sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus...    31   1.7  
sp|Q99PJ7|ZN689_RAT Zinc finger protein 689 OS=Rattus norvegicus...    30   3.7  
sp|O83940|Y975_TREPA UPF0011 protein TP_0975 OS=Treponema pallid...    30   3.7  
sp|B0TS25|UBID_SHEHH 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    27   4.6  
sp|Q0HQV0|UBID_SHESR 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    25   5.9  
sp|Q0HMY1|UBID_SHESM 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    25   5.9  
sp|A0KSH7|UBID_SHESA 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    25   5.9  
sp|A9L4M9|UBID_SHEB9 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    25   5.9  
sp|A6WT44|UBID_SHEB8 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    25   5.9  
sp|A3CZT2|UBID_SHEB5 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    25   5.9  
sp|A1RFJ5|UBID_SHESW 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    25   7.6  
sp|A4YAT1|UBID_SHEPC 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    25   7.6  
sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein ...    29   8.3  

>sp|Q6CQE5|TAR1_KLULA Protein TAR1 OS=Kluyveromyces lactis GN=TAR1-A
           PE=4 SV=2
          Length = 109

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 29/37 (78%), Positives = 31/37 (83%)
 Frame = -3

Query: 367 SFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRR 257
           SF   TCSLSVS  YLALDGIYHPLRAAFPN+ TRR+
Sbjct: 25  SFHHCTCSLSVSRQYLALDGIYHPLRAAFPNNSTRRK 61


>sp|Q8TGM6|TAR1_YEAST Protein TAR1 OS=Saccharomyces cerevisiae
           GN=TAR1 PE=2 SV=1
          Length = 124

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 29/43 (67%), Positives = 32/43 (74%)
 Frame = -3

Query: 367 SFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRRRLVERQ 239
           SF   TCSLSVS  YLALDGIYHPLRAAFPN+ T RR   + +
Sbjct: 40  SFHHCTCSLSVSRQYLALDGIYHPLRAAFPNNSTLRRHFTKNR 82


>sp|Q80UW5|MRCKG_MOUSE Serine/threonine-protein kinase MRCK gamma
            OS=Mus musculus GN=Cdc42bpg PE=2 SV=2
          Length = 1551

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 120  ESRGPAVRIVVWIGVLCD--GPGPSPLERGVREGESPVELGPCRSTRRRRRVGLFGNAAL 293
            ++R P + + V   VLC   GPGP P +R +RE ++P  +        R  VG  G  AL
Sbjct: 1188 QARTPVLCVAVKRQVLCYQLGPGPGPWQRRIRELQAPAPVQSLGLLGDRLCVGAAGTFAL 1247


>sp|Q6DT37|MRCKG_HUMAN Serine/threonine-protein kinase MRCK gamma
            OS=Homo sapiens GN=CDC42BPG PE=1 SV=1
          Length = 1551

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 120  ESRGPAVRIVVWIGVLCD--GPGPSPLERGVREGESPVELGPCRSTRRRRRVGLFGNAAL 293
            ++R P + + V   VLC   GPGP P +R +RE ++P  +        R  VG  G  AL
Sbjct: 1189 QARTPVLCVAVKRQVLCYQLGPGPGPWQRRIRELQAPATVQSLGLLGDRLCVGAAGGFAL 1248


>sp|Q8BII1|PROX2_MOUSE Prospero homeobox protein 2 OS=Mus musculus
           GN=Prox2 PE=2 SV=1
          Length = 593

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 173 RTGPKSPGKGRQRG*EPRRARTLSLHEAPSTSRAVWECSPK 295
           R   + P KGR+R    +R ++L +H+ P  S   WE  PK
Sbjct: 89  RESLRCPEKGRER----KRKQSLPMHQGPLKSSPAWERGPK 125


>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus
           norvegicus GN=March11 PE=1 SV=1
          Length = 398

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +3

Query: 177 PGPSPLERGVREGESPVELGPCR 245
           P P+PLER V  GE PVEL P R
Sbjct: 45  PLPAPLERIVGSGEPPVELAPRR 67


>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus
           musculus GN=March11 PE=2 SV=2
          Length = 400

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +3

Query: 177 PGPSPLERGVREGESPVELGPCR 245
           P P+PLER V  GE PVEL P R
Sbjct: 45  PLPAPLERIVGSGEPPVELAPRR 67


>sp|Q99PJ7|ZN689_RAT Zinc finger protein 689 OS=Rattus norvegicus
           GN=Znf689 PE=2 SV=1
          Length = 500

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 219 SHPL*RPFPGDLGPVRRRGRLSR-LQFA 139
           S PL    PG++GP RRRGR  R L+FA
Sbjct: 5   SAPLLEQAPGEVGPTRRRGRRPRALKFA 32


>sp|O83940|Y975_TREPA UPF0011 protein TP_0975 OS=Treponema pallidum
           GN=TP_0975 PE=3 SV=1
          Length = 274

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 23/59 (38%), Positives = 29/59 (49%)
 Frame = -1

Query: 300 THLGLHSQTARLVDGASWSDRVRARRGSHPL*RPFPGDLGPVRRRGRLSRLQFARRGRA 124
           +H G+H    RLV   + ++   ARR  H L  P    L P + RGR    Q ARR RA
Sbjct: 44  SHFGIHK---RLVSCRAHNEAQAARRLIHFLSTPISAFLSPEKGRGR----QSARRTRA 95


>sp|B0TS25|UBID_SHEHH 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
           OS=Shewanella halifaxensis (strain HAW-EB4) GN=ubiD PE=3
           SV=1
          Length = 493

 Score = 26.9 bits (58), Expect(2) = 4.6
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = -2

Query: 362 PSRYLFAIGLLPVFSLGWNLPPT*GCIPKQPDSSTAPRGATGSELDGALTLSDAPFQGTW 183
           PS +  AI  +P+F    N+PP      + P      +  TG E+D    L+  P Q  W
Sbjct: 98  PSGFKDAIAKIPMFKQALNMPPK---TVRNPPCQQVVK--TGEEVD----LTKLPIQHCW 148

Query: 182 ARSVA 168
              VA
Sbjct: 149 PGDVA 153



 Score = 22.7 bits (47), Expect(2) = 4.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 139 TAGPRDSQAGLFPVRSPLLGKSLLV 65
           T GPR  +  L   R  LLGK  L+
Sbjct: 163 TKGPRQKRQNLGIYRQQLLGKDKLI 187
tr_hit_id A5BKB8
Definition tr|A5BKB8|A5BKB8_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 99
Score (bit) 116.0
E-value 6.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946621|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_D06, 5'
         (369 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BKB8|A5BKB8_VITVI Putative uncharacterized protein OS=Vitis...   116   6e-25
tr|Q6Z8F0|Q6Z8F0_ORYSJ Putative uncharacterized protein P0459B01...    90   6e-17
tr|A7TCL2|A7TCL2_NEMVE Predicted protein (Fragment) OS=Nematoste...    72   1e-11
tr|A7TAG1|A7TAG1_NEMVE Predicted protein (Fragment) OS=Nematoste...    72   1e-11
tr|A7T248|A7T248_NEMVE Predicted protein (Fragment) OS=Nematoste...    72   1e-11
tr|A7SUL8|A7SUL8_NEMVE Predicted protein (Fragment) OS=Nematoste...    72   1e-11
tr|A7SPY6|A7SPY6_NEMVE Predicted protein (Fragment) OS=Nematoste...    72   1e-11
tr|A8DVI0|A8DVI0_NEMVE Predicted protein (Fragment) OS=Nematoste...    72   1e-11
tr|A7SWL7|A7SWL7_NEMVE Predicted protein (Fragment) OS=Nematoste...    69   9e-11
tr|A7SQ02|A7SQ02_NEMVE Predicted protein (Fragment) OS=Nematoste...    69   9e-11
tr|A7S3R0|A7S3R0_NEMVE Predicted protein (Fragment) OS=Nematoste...    69   9e-11
tr|A7T1X8|A7T1X8_NEMVE Predicted protein (Fragment) OS=Nematoste...    66   8e-10
tr|A8DWE6|A8DWE6_NEMVE Predicted protein (Fragment) OS=Nematoste...    65   1e-09
tr|A9U5J8|A9U5J8_PHYPA Predicted protein OS=Physcomitrella paten...    65   2e-09
tr|A9TBN2|A9TBN2_PHYPA Predicted protein (Fragment) OS=Physcomit...    61   3e-08
tr|Q3KTL6|Q3KTL6_SCHJA SJCHGC01393 protein OS=Schistosoma japoni...    59   1e-07
tr|B1N5S6|B1N5S6_ENTHI Putative uncharacterized protein OS=Entam...    59   1e-07
tr|A9PE13|A9PE13_POPTR Putative uncharacterized protein OS=Popul...    58   2e-07
tr|A8NLF8|A8NLF8_BRUMA Putative uncharacterized protein (Fragmen...    54   5e-06
tr|A5AFX7|A5AFX7_VITVI Putative uncharacterized protein OS=Vitis...    50   6e-05
tr|Q223Q7|Q223Q7_TETTH Putative uncharacterized protein OS=Tetra...    49   1e-04
tr|B7RDP9|B7RDP9_9THEM Putative uncharacterized protein OS=Marin...    36   0.003
tr|B6LZP2|B6LZP2_BRAFL Putative uncharacterized protein OS=Branc...    41   0.034
tr|A1CUU5|A1CUU5_NEOFI Putative uncharacterized protein OS=Neosa...    40   0.044
tr|A4XBY0|A4XBY0_SALTO Putative uncharacterized protein OS=Salin...    38   0.22 
tr|A8PGP3|A8PGP3_BRUMA Putative uncharacterized protein OS=Brugi...    37   0.64 
tr|B0LU20|B0LU20_9ACTO Integrase/recombinase OS=Streptomyces sp....    37   0.64 
tr|B0THV2|B0THV2_HELMI Putative uncharacterized protein OS=Helio...    36   0.84 
tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein OS=Geoba...    36   0.84 
tr|Q28ZQ6|Q28ZQ6_DROPS GA12292 OS=Drosophila pseudoobscura pseud...    36   0.84 

>tr|A5BKB8|A5BKB8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001840 PE=4 SV=1
          Length = 347

 Score =  116 bits (290), Expect = 6e-25
 Identities = 61/99 (61%), Positives = 67/99 (67%)
 Frame = +1

Query: 73  RISLVAASEPERAQLENRAAPPCEL*SG*ASSATDRAQVPWKGASERVRAPSSSDPVAPR 252
           R+ +   + P+         P     SG ASSA DRAQVP KGA ERVRAPS  DPVAPR
Sbjct: 238 RLGVARVTSPQGPPTRTARDPRSRPQSGEASSAADRAQVPXKGAPERVRAPSCPDPVAPR 297

Query: 253 GAVDESGCLGMQP*VGGRFHPRLNTGKRPIANKYREGKM 369
           GAV ESGC GMQ   GG+F PRLNTG+RPIANK REGKM
Sbjct: 298 GAVGESGCXGMQXQSGGKFRPRLNTGERPIANKCREGKM 336


>tr|Q6Z8F0|Q6Z8F0_ORYSJ Putative uncharacterized protein P0459B01.18
           OS=Oryza sativa subsp. japonica GN=P0459B01.18 PE=4 SV=1
          Length = 109

 Score = 89.7 bits (221), Expect = 6e-17
 Identities = 50/75 (66%), Positives = 50/75 (66%)
 Frame = -2

Query: 227 DGALTLSDAPFQGTWARSVAEDAYPDYNSHGGAARFSSWALSGSLAATREILVSFFSSA* 48
           DGALTL  APFQGTWARSVAEDA PDYNS G AARFSSWA  GSLA TR IL        
Sbjct: 3   DGALTLPGAPFQGTWARSVAEDASPDYNSDGAAARFSSWASPGSLAVTRGIL-------- 54

Query: 47  *YA*TQRVALPDLGS 3
                 RV  PDLGS
Sbjct: 55  ------RVVPPDLGS 63


>tr|A7TCL2|A7TCL2_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g69522 PE=4 SV=1
          Length = 67

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 31/40 (77%), Positives = 35/40 (87%)
 Frame = -3

Query: 367 SFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           SFP GTCSLSVSC YLALDG+YHP  AAFPN+PTRR+ +V
Sbjct: 19  SFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKHIV 58


>tr|A7TAG1|A7TAG1_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g152336 PE=4 SV=1
          Length = 130

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 31/40 (77%), Positives = 35/40 (87%)
 Frame = -3

Query: 367 SFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           SFP GTCSLSVSC YLALDG+YHP  AAFPN+PTRR+ +V
Sbjct: 35  SFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKHIV 74


>tr|A7T248|A7T248_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g76701 PE=4 SV=1
          Length = 70

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 31/40 (77%), Positives = 35/40 (87%)
 Frame = -3

Query: 367 SFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           SFP GTCSLSVSC YLALDG+YHP  AAFPN+PTRR+ +V
Sbjct: 19  SFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKHIV 58


>tr|A7SUL8|A7SUL8_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g76780 PE=4 SV=1
          Length = 70

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 31/40 (77%), Positives = 35/40 (87%)
 Frame = -3

Query: 367 SFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           SFP GTCSLSVSC YLALDG+YHP  AAFPN+PTRR+ +V
Sbjct: 19  SFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKHIV 58


>tr|A7SPY6|A7SPY6_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g153457 PE=4 SV=1
          Length = 59

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 31/40 (77%), Positives = 35/40 (87%)
 Frame = -3

Query: 367 SFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           SFP GTCSLSVSC YLALDG+YHP  AAFPN+PTRR+ +V
Sbjct: 19  SFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKHIV 58


>tr|A8DVI0|A8DVI0_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g156477 PE=4 SV=1
          Length = 60

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 31/38 (81%), Positives = 34/38 (89%)
 Frame = -3

Query: 367 SFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRRR 254
           SFP GTCSLSVSC YLALDG+YHP  AAFPN+PTRR+R
Sbjct: 19  SFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKR 56


>tr|A7SWL7|A7SWL7_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g67728 PE=4 SV=1
          Length = 76

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 30/40 (75%), Positives = 34/40 (85%)
 Frame = -3

Query: 367 SFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           SFP GTCSLSVSC YLALDG+Y P  AAFPN+PTRR+ +V
Sbjct: 25  SFPHGTCSLSVSCQYLALDGVYQPFWAAFPNNPTRRKHIV 64


>tr|A7SQ02|A7SQ02_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g126693 PE=4 SV=1
          Length = 54

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 30/36 (83%), Positives = 32/36 (88%)
 Frame = -3

Query: 367 SFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRR 260
           SFP GTCSLSVSC YLALDG+YHP  AAFPN+PTRR
Sbjct: 19  SFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRR 54