NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946532
Clone id YMU02A01NGRL0012_O21
Library
Length 438
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_O21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
AAGTTAGTGCTTGACAAAATGTTTCAATATTGCAGAGTTTGATGGGGGATCTTTTATGCA
GCTCGTTTGGTATCGGTTCTGGATCCTGTGTCATTTCATACAGGAACAATGTAGGGTTGC
CCTTCTCCGGGTCGAGGAACGTTGAATTGTACAGAAAAGATACAACTTTATCCATACATA
TGTAACCTACCTCTTTAAGCTAGGCTTCCCCTTCAAAAGCTGTGCAGTCTATACATTTTG
GCCGAGTTTTCTGGTGGGCAGCAAAGTATGCTGCTGAAGTACGAAATTTTGCTACTTGAC
TACATTGTAAACTTAATGTAACAAGTTCAGCAAAAGCTGCTTATTGTCAGGAAATTGTAC
ACTCTTTGCTTTGAATGCTATCCTCCATATGCAAAGTGTGCAAAGGACAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q12594
Definition sp|Q12594|DMAW_CLAFS Tryptophan dimethylallyltransferase OS=Claviceps fusiformis
Align length 33
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946532|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_O21, 5'
         (408 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12594|DMAW_CLAFS Tryptophan dimethylallyltransferase OS=Clav...    30   3.7  
sp|Q6X1E1|DMAW_BALOB Tryptophan dimethylallyltransferase OS=Bala...    30   3.7  
sp|Q2MV57|TECT2_MOUSE Tectonic-2 OS=Mus musculus GN=Tctn2 PE=2 SV=2    30   5.0  
sp|P89946|POLS_BFV Structural polyprotein OS=Barmah forest virus...    29   6.3  

>sp|Q12594|DMAW_CLAFS Tryptophan dimethylallyltransferase
           OS=Claviceps fusiformis GN=dmaW PE=1 SV=1
          Length = 455

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
 Frame = +2

Query: 164 NFIHTYVTYLFKLGFPFKSCAVYTF----WPSF 250
           N++HTYV++ ++   P+ S  +++F    WP+F
Sbjct: 405 NYLHTYVSFSYRKNKPYLSVYLHSFETGQWPAF 437


>sp|Q6X1E1|DMAW_BALOB Tryptophan dimethylallyltransferase
           OS=Balansia obtecta GN=dmaW PE=3 SV=1
          Length = 465

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = +2

Query: 164 NFIHTYVTYLFKLGFPFKSCAVYTF----WPSF 250
           N++HTY+++ ++   P+ S  ++TF    WP F
Sbjct: 398 NYLHTYISFSYRKNKPYLSVYLHTFESGSWPIF 430


>sp|Q2MV57|TECT2_MOUSE Tectonic-2 OS=Mus musculus GN=Tctn2 PE=2 SV=2
          Length = 700

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 111 HCSCMK*HRIQNRYQTSCIKDPPSNSAILKHF 16
           HC+    H+  + +   C++ PPS S  L HF
Sbjct: 218 HCAVSTTHQTPDWFPLLCVQSPPSTSPFLGHF 249


>sp|P89946|POLS_BFV Structural polyprotein OS=Barmah forest virus
           PE=3 SV=2
          Length = 1239

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 334 FAELVTLSLQCSQVAKFRTSAAYFAAHQKTRPK---CIDC 224
           + EL+  ++ C Q  + + S A+F A++ TRP    C DC
Sbjct: 303 YYELLDSTMHCPQGRRPKRSVAHFEAYKATRPYIGWCADC 342
tr_hit_id Q59QS0
Definition tr|Q59QS0|Q59QS0_CANAL Possible transmembrane protein OS=Candida albicans
Align length 59
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946532|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_O21, 5'
         (408 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q59QS0|Q59QS0_CANAL Possible transmembrane protein OS=Candida...    36   1.1  
tr|A8RFA4|A8RFA4_9FIRM Putative uncharacterized protein OS=Eubac...    34   4.2  

>tr|Q59QS0|Q59QS0_CANAL Possible transmembrane protein OS=Candida
           albicans GN=CaO19.10176 PE=4 SV=1
          Length = 1093

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
 Frame = +3

Query: 234 HFGRVFWWAAKYAAEVRNFAT*LHC-------KLNVTSSAKAAYCQEIVHSLL*MLSSI 389
           H+ ++ WW++K    V  F T + C       +L+VTS    AY Q ++H+++ +L  I
Sbjct: 718 HYVKISWWSSKLMFPVARFLTAVLCIAFIRDLELSVTSKLYVAYAQLLIHTIVGILFCI 776


>tr|A8RFA4|A8RFA4_9FIRM Putative uncharacterized protein
           OS=Eubacterium dolichum DSM 3991 GN=EUBDOL_02190 PE=4
           SV=1
          Length = 189

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = -3

Query: 211 GEA*LKEVGYICMDKVVSFLYNSTFLDPEKGNPTLFLYEMTQDPEPIPNELHKRSPIKLC 32
           GEA + E+GY     +++F +N  F+ P  GN T ++   ++D     N   KR  ++L 
Sbjct: 85  GEAYVSEIGYQHFGIILAFFHNKAFVVPMSGNHTAYVQAYSKD-----NPNGKRHLMRLG 139

Query: 31  NIE 23
            +E
Sbjct: 140 KVE 142