NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946347
Clone id YMU02A01NGRL0012_F05
Library
Length 412
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_F05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCGGACCTCAGATCAGGCAAGGCTACCCGCTGAGTTTAAGCATATCACTAAGCGGAGGAA
AAGAAACTAACAAGGATTTCCCTAGTAGCGGCGAGCGAACCGGAAAGAGCCCAGCTTGAG
AATCGCGCGGCCCCGCCGTGCGAATTGTAGTCTGGAGAGCCGTCCTCTGCGACGGACCGG
GCCCAAGTCCCCTGGAAAGGGGCGTCAGAGAGGGTGAGAGCCCCGTCGAGCTCGGACCCT
GTCGCTCCACGAGGCGCCGTCGACGAGTCGGGCTGTTTGGGAATGCAGCCCTAAGTGGGT
GGTAGATTCCATCCAAGGCTAAATACGGGCAAGAGGCCGATAGCGAACAAGTACCGCGAG
GGAAAGATGAAAAGGACTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6CQE5
Definition sp|Q6CQE5|TAR1_KLULA Protein TAR1 OS=Kluyveromyces lactis
Align length 41
Score (bit) 63.9
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946347|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_F05, 5'
         (382 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6CQE5|TAR1_KLULA Protein TAR1 OS=Kluyveromyces lactis GN=TAR...    64   2e-10
sp|Q8TGM6|TAR1_YEAST Protein TAR1 OS=Saccharomyces cerevisiae GN...    63   4e-10
sp|Q80UW5|MRCKG_MOUSE Serine/threonine-protein kinase MRCK gamma...    36   0.067
sp|Q6DT37|MRCKG_HUMAN Serine/threonine-protein kinase MRCK gamma...    36   0.067
sp|Q8BII1|PROX2_MOUSE Prospero homeobox protein 2 OS=Mus musculu...    31   1.7  
sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattu...    31   1.7  
sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus...    31   1.7  
sp|Q9NUP1|CNO_HUMAN Protein cappuccino homolog OS=Homo sapiens G...    31   2.2  
sp|Q99PJ7|ZN689_RAT Zinc finger protein 689 OS=Rattus norvegicus...    30   3.7  
sp|O83940|Y975_TREPA UPF0011 protein TP_0975 OS=Treponema pallid...    30   3.7  
sp|Q75B50|DED1_ASHGO ATP-dependent RNA helicase DED1 OS=Ashbya g...    30   4.8  
sp|Q21565|AMT3_CAEEL Putative ammonium transporter 3 OS=Caenorha...    30   4.8  
sp|B0TS25|UBID_SHEHH 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    27   5.7  
sp|A2VDR9|ZN750_BOVIN Protein ZNF750 OS=Bos taurus GN=ZNF750 PE=...    29   6.3  
sp|P38968|SEC31_YEAST Protein transport protein SEC31 OS=Sacchar...    29   6.3  
sp|Q8TEQ6|GEMI5_HUMAN Gem-associated protein 5 OS=Homo sapiens G...    29   6.3  
sp|Q31FH4|Y1507_THICR Maf-like protein Tcr_1507 OS=Thiomicrospir...    29   6.3  
sp|P15931|FLGJ_SALTY Peptidoglycan hydrolase flgJ OS=Salmonella ...    29   6.3  
sp|Q0HQV0|UBID_SHESR 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    25   7.4  
sp|Q0HMY1|UBID_SHESM 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    25   7.4  
sp|A0KSH7|UBID_SHESA 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    25   7.4  
sp|A9L4M9|UBID_SHEB9 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    25   7.4  
sp|A6WT44|UBID_SHEB8 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    25   7.4  
sp|A3CZT2|UBID_SHEB5 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    25   7.4  
sp|A6H8Y1|BDP1_HUMAN Transcription factor TFIIIB component B'' h...    29   8.2  
sp|Q8K1S7|KREM2_MOUSE Kremen protein 2 OS=Mus musculus GN=Kremen...    29   8.2  
sp|A1RFJ5|UBID_SHESW 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    25   9.5  
sp|A4YAT1|UBID_SHEPC 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    25   9.5  

>sp|Q6CQE5|TAR1_KLULA Protein TAR1 OS=Kluyveromyces lactis GN=TAR1-A
           PE=4 SV=2
          Length = 109

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 31/41 (75%), Positives = 33/41 (80%)
 Frame = -1

Query: 379 KSFSSFPRGTCSLSASCPYLALDGIYHPLRAAFPNSPTRRR 257
           K FSSF   TCSLS S  YLALDGIYHPLRAAFPN+ TRR+
Sbjct: 21  KFFSSFHHCTCSLSVSRQYLALDGIYHPLRAAFPNNSTRRK 61


>sp|Q8TGM6|TAR1_YEAST Protein TAR1 OS=Saccharomyces cerevisiae
           GN=TAR1 PE=2 SV=1
          Length = 124

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 31/47 (65%), Positives = 34/47 (72%)
 Frame = -1

Query: 379 KSFSSFPRGTCSLSASCPYLALDGIYHPLRAAFPNSPTRRRRLVERQ 239
           K FSSF   TCSLS S  YLALDGIYHPLRAAFPN+ T RR   + +
Sbjct: 36  KFFSSFHHCTCSLSVSRQYLALDGIYHPLRAAFPNNSTLRRHFTKNR 82


>sp|Q80UW5|MRCKG_MOUSE Serine/threonine-protein kinase MRCK gamma
            OS=Mus musculus GN=Cdc42bpg PE=2 SV=2
          Length = 1551

 Score = 35.8 bits (81), Expect = 0.067
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 120  ESRGPAVRIVVWRAVLCD--GPGPSPLERGVREGESPVELGPCRSTRRRRRVGLFGNAAL 293
            ++R P + + V R VLC   GPGP P +R +RE ++P  +        R  VG  G  AL
Sbjct: 1188 QARTPVLCVAVKRQVLCYQLGPGPGPWQRRIRELQAPAPVQSLGLLGDRLCVGAAGTFAL 1247


>sp|Q6DT37|MRCKG_HUMAN Serine/threonine-protein kinase MRCK gamma
            OS=Homo sapiens GN=CDC42BPG PE=1 SV=1
          Length = 1551

 Score = 35.8 bits (81), Expect = 0.067
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 120  ESRGPAVRIVVWRAVLCD--GPGPSPLERGVREGESPVELGPCRSTRRRRRVGLFGNAAL 293
            ++R P + + V R VLC   GPGP P +R +RE ++P  +        R  VG  G  AL
Sbjct: 1189 QARTPVLCVAVKRQVLCYQLGPGPGPWQRRIRELQAPATVQSLGLLGDRLCVGAAGGFAL 1248


>sp|Q8BII1|PROX2_MOUSE Prospero homeobox protein 2 OS=Mus musculus
           GN=Prox2 PE=2 SV=1
          Length = 593

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 173 RTGPKSPGKGRQRG*EPRRARTLSLHEAPSTSRAVWECSPK 295
           R   + P KGR+R    +R ++L +H+ P  S   WE  PK
Sbjct: 89  RESLRCPEKGRER----KRKQSLPMHQGPLKSSPAWERGPK 125


>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus
           norvegicus GN=March11 PE=1 SV=1
          Length = 398

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +3

Query: 177 PGPSPLERGVREGESPVELGPCR 245
           P P+PLER V  GE PVEL P R
Sbjct: 45  PLPAPLERIVGSGEPPVELAPRR 67


>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus
           musculus GN=March11 PE=2 SV=2
          Length = 400

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +3

Query: 177 PGPSPLERGVREGESPVELGPCR 245
           P P+PLER V  GE PVEL P R
Sbjct: 45  PLPAPLERIVGSGEPPVELAPRR 67


>sp|Q9NUP1|CNO_HUMAN Protein cappuccino homolog OS=Homo sapiens
           GN=CNO PE=1 SV=1
          Length = 217

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 290 GCIPKQPDSSTAPRGATGSELDGALTLSDAPFQGTWARSVAEDGSP 153
           G +P+       P+GA  S   G ++ S +   G W    AEDG+P
Sbjct: 9   GALPEGLAEEAEPQGAAWSGDSGTVSQSHSSASGPWEDEGAEDGAP 54


>sp|Q99PJ7|ZN689_RAT Zinc finger protein 689 OS=Rattus norvegicus
           GN=Znf689 PE=2 SV=1
          Length = 500

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 219 SHPL*RPFPGDLGPVRRRGRLSR-LQFA 139
           S PL    PG++GP RRRGR  R L+FA
Sbjct: 5   SAPLLEQAPGEVGPTRRRGRRPRALKFA 32


>sp|O83940|Y975_TREPA UPF0011 protein TP_0975 OS=Treponema pallidum
           GN=TP_0975 PE=3 SV=1
          Length = 274

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 23/59 (38%), Positives = 29/59 (49%)
 Frame = -2

Query: 300 THLGLHSQTARLVDGASWSDRVRARRGSHPL*RPFPGDLGPVRRRGRLSRLQFARRGRA 124
           +H G+H    RLV   + ++   ARR  H L  P    L P + RGR    Q ARR RA
Sbjct: 44  SHFGIHK---RLVSCRAHNEAQAARRLIHFLSTPISAFLSPEKGRGR----QSARRTRA 95
tr_hit_id A5BKB8
Definition tr|A5BKB8|A5BKB8_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 103
Score (bit) 125.0
E-value 1.0e-27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946347|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_F05, 5'
         (382 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BKB8|A5BKB8_VITVI Putative uncharacterized protein OS=Vitis...   125   1e-27
tr|Q6Z8F0|Q6Z8F0_ORYSJ Putative uncharacterized protein P0459B01...    87   3e-16
tr|A7TCL2|A7TCL2_NEMVE Predicted protein (Fragment) OS=Nematoste...    76   7e-13
tr|A7TAG1|A7TAG1_NEMVE Predicted protein (Fragment) OS=Nematoste...    76   7e-13
tr|A7T248|A7T248_NEMVE Predicted protein (Fragment) OS=Nematoste...    76   7e-13
tr|A7SUL8|A7SUL8_NEMVE Predicted protein (Fragment) OS=Nematoste...    76   7e-13
tr|A7SPY6|A7SPY6_NEMVE Predicted protein (Fragment) OS=Nematoste...    76   7e-13
tr|A8DVI0|A8DVI0_NEMVE Predicted protein (Fragment) OS=Nematoste...    76   1e-12
tr|A7SWL7|A7SWL7_NEMVE Predicted protein (Fragment) OS=Nematoste...    73   6e-12
tr|A7SQ02|A7SQ02_NEMVE Predicted protein (Fragment) OS=Nematoste...    73   6e-12
tr|A7S3R0|A7S3R0_NEMVE Predicted protein (Fragment) OS=Nematoste...    73   6e-12
tr|A7T1X8|A7T1X8_NEMVE Predicted protein (Fragment) OS=Nematoste...    70   5e-11
tr|A8DWE6|A8DWE6_NEMVE Predicted protein (Fragment) OS=Nematoste...    69   9e-11
tr|A9TBN2|A9TBN2_PHYPA Predicted protein (Fragment) OS=Physcomit...    67   6e-10
tr|A9U5J8|A9U5J8_PHYPA Predicted protein OS=Physcomitrella paten...    66   1e-09
tr|Q3KTL6|Q3KTL6_SCHJA SJCHGC01393 protein OS=Schistosoma japoni...    64   3e-09
tr|B1N5S6|B1N5S6_ENTHI Putative uncharacterized protein OS=Entam...    64   3e-09
tr|A8NLF8|A8NLF8_BRUMA Putative uncharacterized protein (Fragmen...    59   9e-08
tr|A9PE13|A9PE13_POPTR Putative uncharacterized protein OS=Popul...    59   2e-07
tr|A5AFX7|A5AFX7_VITVI Putative uncharacterized protein OS=Vitis...    55   2e-06
tr|Q223Q7|Q223Q7_TETTH Putative uncharacterized protein OS=Tetra...    55   2e-06
tr|B7RDP9|B7RDP9_9THEM Putative uncharacterized protein OS=Marin...    35   3e-04
tr|A5B938|A5B938_VITVI Putative uncharacterized protein OS=Vitis...    44   0.003
tr|A8PGP3|A8PGP3_BRUMA Putative uncharacterized protein OS=Brugi...    42   0.012
tr|A1CUU5|A1CUU5_NEOFI Putative uncharacterized protein OS=Neosa...    42   0.012
tr|B6LZP2|B6LZP2_BRAFL Putative uncharacterized protein OS=Branc...    41   0.033
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo...    39   0.040
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo...    39   0.040
tr|Q652R5|Q652R5_ORYSJ Putative uncharacterized protein P0603C10...    35   0.13 
tr|Q0BZK1|Q0BZK1_HYPNA N-formylglutamate amidohydrolase OS=Hypho...    37   0.48 

>tr|A5BKB8|A5BKB8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001840 PE=4 SV=1
          Length = 347

 Score =  125 bits (313), Expect = 1e-27
 Identities = 65/103 (63%), Positives = 71/103 (68%)
 Frame = +1

Query: 73  RISLVAASEPERAQLENRAAPPCEL*SGEPSSATDRAQVPWKGASERVRAPSSSDPVAPR 252
           R+ +   + P+         P     SGE SSA DRAQVP KGA ERVRAPS  DPVAPR
Sbjct: 238 RLGVARVTSPQGPPTRTARDPRSRPQSGEASSAADRAQVPXKGAPERVRAPSCPDPVAPR 297

Query: 253 GAVDESGCLGMQP*VGGRFHPRLNTGKRPIANKYREGKMKRTL 381
           GAV ESGC GMQ   GG+F PRLNTG+RPIANK REGKMKRTL
Sbjct: 298 GAVGESGCXGMQXQSGGKFRPRLNTGERPIANKCREGKMKRTL 340


>tr|Q6Z8F0|Q6Z8F0_ORYSJ Putative uncharacterized protein P0459B01.18
           OS=Oryza sativa subsp. japonica GN=P0459B01.18 PE=4 SV=1
          Length = 109

 Score = 87.4 bits (215), Expect = 3e-16
 Identities = 43/52 (82%), Positives = 43/52 (82%)
 Frame = -3

Query: 227 DGALTLSDAPFQGTWARSVAEDGSPDYNSHGGAARFSSWALSGSLAATREIL 72
           DGALTL  APFQGTWARSVAED SPDYNS G AARFSSWA  GSLA TR IL
Sbjct: 3   DGALTLPGAPFQGTWARSVAEDASPDYNSDGAAARFSSWASPGSLAVTRGIL 54


>tr|A7TCL2|A7TCL2_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g69522 PE=4 SV=1
          Length = 67

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 33/44 (75%), Positives = 37/44 (84%)
 Frame = -1

Query: 379 KSFSSFPRGTCSLSASCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           K FSSFP GTCSLS SC YLALDG+YHP  AAFPN+PTRR+ +V
Sbjct: 15  KCFSSFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKHIV 58


>tr|A7TAG1|A7TAG1_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g152336 PE=4 SV=1
          Length = 130

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 33/44 (75%), Positives = 37/44 (84%)
 Frame = -1

Query: 379 KSFSSFPRGTCSLSASCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           K FSSFP GTCSLS SC YLALDG+YHP  AAFPN+PTRR+ +V
Sbjct: 31  KCFSSFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKHIV 74


>tr|A7T248|A7T248_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g76701 PE=4 SV=1
          Length = 70

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 33/44 (75%), Positives = 37/44 (84%)
 Frame = -1

Query: 379 KSFSSFPRGTCSLSASCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           K FSSFP GTCSLS SC YLALDG+YHP  AAFPN+PTRR+ +V
Sbjct: 15  KCFSSFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKHIV 58


>tr|A7SUL8|A7SUL8_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g76780 PE=4 SV=1
          Length = 70

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 33/44 (75%), Positives = 37/44 (84%)
 Frame = -1

Query: 379 KSFSSFPRGTCSLSASCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           K FSSFP GTCSLS SC YLALDG+YHP  AAFPN+PTRR+ +V
Sbjct: 15  KCFSSFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKHIV 58


>tr|A7SPY6|A7SPY6_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g153457 PE=4 SV=1
          Length = 59

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 33/44 (75%), Positives = 37/44 (84%)
 Frame = -1

Query: 379 KSFSSFPRGTCSLSASCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           K FSSFP GTCSLS SC YLALDG+YHP  AAFPN+PTRR+ +V
Sbjct: 15  KCFSSFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKHIV 58


>tr|A8DVI0|A8DVI0_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g156477 PE=4 SV=1
          Length = 60

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 33/42 (78%), Positives = 36/42 (85%)
 Frame = -1

Query: 379 KSFSSFPRGTCSLSASCPYLALDGIYHPLRAAFPNSPTRRRR 254
           K FSSFP GTCSLS SC YLALDG+YHP  AAFPN+PTRR+R
Sbjct: 15  KCFSSFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKR 56


>tr|A7SWL7|A7SWL7_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g67728 PE=4 SV=1
          Length = 76

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 32/44 (72%), Positives = 36/44 (81%)
 Frame = -1

Query: 379 KSFSSFPRGTCSLSASCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           K FSSFP GTCSLS SC YLALDG+Y P  AAFPN+PTRR+ +V
Sbjct: 21  KCFSSFPHGTCSLSVSCQYLALDGVYQPFWAAFPNNPTRRKHIV 64


>tr|A7SQ02|A7SQ02_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g126693 PE=4 SV=1
          Length = 54

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 32/40 (80%), Positives = 34/40 (85%)
 Frame = -1

Query: 379 KSFSSFPRGTCSLSASCPYLALDGIYHPLRAAFPNSPTRR 260
           K FSSFP GTCSLS SC YLALDG+YHP  AAFPN+PTRR
Sbjct: 15  KCFSSFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRR 54