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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946315
Clone id YMU02A01NGRL0012_D06
Library
Length 566
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_D06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAATCCGACAATCTCTCTTTGCACCAACGTTGCAGCCATCGCAGGGAAGCAGGGCCGCAA
TGCCGCTTCTACCTCGACTCATTATCTTCGACCACCACAATCTCTGCTGGAGCGTAATTC
AGGACGAGGGAAGCTTTAGCCTTCTGGCAGAGGTTTGTGAGTCGATCAATATTGGCACAT
CTAAGGCGCCTGGACGAATCTTCCTGCCCGAGAGAAAGGGGGCGAGAGTCAGCTGCTTTG
GAGTAGCAGCACCTGTGAGCGCAGAGCATGTACTGTCCGGGATGTTGGATGCTTAAAGGC
CAGTCCTCTGTATATTGACAGATTCCCTGCCTTGGTACTTTTCTTTTTGGCATTAGATAC
ACATTTCAACAAAGCACATTCGAATGTATGCCTTTCCCATTGGCCAGGTTCAGCATGTGT
ATGTCGCAATGCTGGTGATTCAAATGTAATATTGATGCGAAGGAACATGAAGCCTAGTGT
GCATGCACTTGCGCACTGTTATGTTGGTCATGTCCTGGTTCAGCATGCGTATGTCGTAAT
GCTGCTTATTCTGTTGTGTGCATTCT
■■Homology search results ■■ -
sp_hit_id P78527
Definition sp|P78527|PRKDC_HUMAN DNA-dependent protein kinase catalytic subunit OS=Homo sapiens
Align length 20
Score (bit) 32.7
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946315|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_D06, 5'
         (566 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P78527|PRKDC_HUMAN DNA-dependent protein kinase catalytic sub...    33   1.3  
sp|P97313|PRKDC_MOUSE DNA-dependent protein kinase catalytic sub...    32   2.2  
sp|Q8WN22|PRKDC_CANFA DNA-dependent protein kinase catalytic sub...    32   2.2  
sp|Q57990|Y570_METJA Uncharacterized protein MJ0570 OS=Methanoca...    31   3.7  
sp|Q9DEI1|PRKDC_XENLA DNA-dependent protein kinase catalytic sub...    31   3.7  
sp|Q8QGX4|PRKDC_CHICK DNA-dependent protein kinase catalytic sub...    31   3.7  
sp|Q602T2|MSRA_METCA Peptide methionine sulfoxide reductase msrA...    31   3.7  
sp|A3CW67|PYRI_METMJ Aspartate carbamoyltransferase regulatory c...    31   4.9  
sp|Q6ZRP5|YD019_HUMAN Putative uncharacterized protein FLJ46204 ...    30   6.4  

>sp|P78527|PRKDC_HUMAN DNA-dependent protein kinase catalytic subunit
            OS=Homo sapiens GN=PRKDC PE=1 SV=3
          Length = 4128

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 344  FLALDTHFNKAHSNVCLSHW 403
            FLAL +HF  +H+ +C+SHW
Sbjct: 3897 FLALRSHFASSHALICISHW 3916


>sp|P97313|PRKDC_MOUSE DNA-dependent protein kinase catalytic subunit
            OS=Mus musculus GN=Prkdc PE=1 SV=2
          Length = 4128

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 344  FLALDTHFNKAHSNVCLSHW 403
            FLAL +HF  +H+ +C+SHW
Sbjct: 3897 FLALRSHFASSHALLCISHW 3916


>sp|Q8WN22|PRKDC_CANFA DNA-dependent protein kinase catalytic subunit
            OS=Canis familiaris GN=PRKDC PE=2 SV=1
          Length = 4144

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 344  FLALDTHFNKAHSNVCLSHW 403
            FLAL +HF  +H+ +C+SHW
Sbjct: 3913 FLALRSHFASSHALMCISHW 3932


>sp|Q57990|Y570_METJA Uncharacterized protein MJ0570
           OS=Methanocaldococcus jannaschii GN=MJ0570 PE=4 SV=1
          Length = 223

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -1

Query: 212 LGQEDSSRRLRCANIDRLTNLCQKAKASLVLNYAPAEIVVVEDNESR*KRHCGPASLRWL 33
           LG+E   +R+   NID+L N+C+K           AE  V +    + +     A + W 
Sbjct: 147 LGKEWLGKRITKENIDKLLNICEKYGIHKAFEGGEAETFVFDAPMFKKRIEVVEAEIEWH 206

Query: 32  QRW 24
           + W
Sbjct: 207 ETW 209


>sp|Q9DEI1|PRKDC_XENLA DNA-dependent protein kinase catalytic subunit
            OS=Xenopus laevis GN=prkdc PE=2 SV=1
          Length = 4146

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +2

Query: 344  FLALDTHFNKAHSNVCLSHW 403
            FL+L +HF ++H+ +C+SHW
Sbjct: 3915 FLSLRSHFARSHALLCVSHW 3934


>sp|Q8QGX4|PRKDC_CHICK DNA-dependent protein kinase catalytic subunit
            OS=Gallus gallus GN=PRKDC PE=2 SV=1
          Length = 4134

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 344  FLALDTHFNKAHSNVCLSHW 403
            FLAL +HF  +H+ +C+SHW
Sbjct: 3903 FLALRSHFVSSHALMCVSHW 3922


>sp|Q602T2|MSRA_METCA Peptide methionine sulfoxide reductase msrA
           OS=Methylococcus capsulatus GN=msrA PE=3 SV=1
          Length = 222

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = -2

Query: 289 SNIPDSTCSALTGAATPKQLTLAPFLSGRKIRP 191
           S +PD    AL G ATP Q+T   F+ GR+IRP
Sbjct: 8   SALPDPH-DALPGRATPLQVTETHFVHGRRIRP 39


>sp|A3CW67|PYRI_METMJ Aspartate carbamoyltransferase regulatory
           chain OS=Methanoculleus marisnigri (strain ATCC 35101 /
           DSM 1498 / JR1) GN=pyrI PE=3 SV=1
          Length = 155

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = -1

Query: 254 RCCYSKAADSRPLSLGQED----SSRRLRCANIDRLTNLCQKAKASLVLNYAPAEIVVVE 87
           R C S A +     +G++D     +R LR   +DR+  L  +AK +++ NY   E   VE
Sbjct: 43  RECLSIATNVESKRMGKKDIVKIENRELRTEEVDRIALLAPQAKINIIRNYKVVEKKGVE 102


>sp|Q6ZRP5|YD019_HUMAN Putative uncharacterized protein FLJ46204
           OS=Homo sapiens PE=2 SV=2
          Length = 223

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -1

Query: 560 HTTE*AALRHTHAEPGHDQHNSAQVHAH*ASCSFASILHLNHQHCDIH 417
           HT   +   HTHA   +        H+H  SC+  S +   H H  +H
Sbjct: 130 HTRAHSTHAHTHAHSHYHTRTLTLTHSHAHSCTLTSTITHMHTHTHMH 177
tr_hit_id B6L3H8
Definition tr|B6L3H8|B6L3H8_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 120
Score (bit) 34.7
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946315|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_D06, 5'
         (566 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6L3H8|B6L3H8_BRAFL Putative uncharacterized protein OS=Branc...    35   3.7  
tr|Q4IZK4|Q4IZK4_AZOVI Putative uncharacterized protein OS=Azoto...    34   6.4  
tr|B2ETG5|B2ETG5_9BACT Multi-sensor hybrid histidine kinase OS=b...    33   8.3  

>tr|B6L3H8|B6L3H8_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_117943 PE=4 SV=1
          Length = 1154

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 10/120 (8%)
 Frame = -1

Query: 455 SILHLNHQHCDIHMLNLANGKGIHSNVLC*NVYLMPKRKVPRQGICQYTEDWPLSIQH-- 282
           S LHL H  C +HML++      HSN             VP  G+  + E W  S+Q+  
Sbjct: 463 SALHLCHTWCQLHMLSIHMKGSKHSN-----------ESVPNLGV--HEEWWDFSLQYPH 509

Query: 281 --PGQYMLCAHRCCYSKAADSRPLSLGQEDSSR------RLRCANIDRLTNLCQKAKASL 126
             PG++     +   + +   R + +    S         L C+NI  +  LC + + +L
Sbjct: 510 VSPGEWSTLCQKLLKANSKRIRYVLVTSVTSDSYSTARWYLLCSNIGLIVPLCTQRQLAL 569


>tr|Q4IZK4|Q4IZK4_AZOVI Putative uncharacterized protein
           OS=Azotobacter vinelandii DJ GN=AvinDRAFT_4279 PE=4 SV=1
          Length = 123

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 30  LQPSQGSRAAMPLLPRLIIFDHHNLCWSVIQDEG--SFSLLAEVCESINIGTSKAPG 194
           L+PS G R   P+L R ++F     C  ++ + G  +FSL      ++NIG ++ PG
Sbjct: 60  LRPSDGMRRCPPILHR-VLFGSLERCIGILIEHGGGAFSLALPQAVALNIGEARTPG 115


>tr|B2ETG5|B2ETG5_9BACT Multi-sensor hybrid histidine kinase
            OS=bacterium Ellin514 GN=CflavDRAFT_3529 PE=4 SV=1
          Length = 1309

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
 Frame = -3

Query: 438  SPALRHTHAEPGQWERHTFECALLKCVSNAKKKSTKAGNLSIY-------RGLAFKHPTS 280
            +P+L   HA+PG  E+      LL    NA+    K G L IY       +G A +HP +
Sbjct: 1035 APSLPQVHADPGMMEQ-----ILLNLAVNARDAMPKGGRLLIYSSAMTLDQGQALRHPGA 1089

Query: 279  R 277
            R
Sbjct: 1090 R 1090