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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946286
Clone id YMU02A01NGRL0012_B17
Library
Length 538
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_B17. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
ACTACTACTACTTTCAGTATAGTTCTAGCCTCAACTTTCAGTTTTAATTGTATCGCTAGA
TAGGTGGTGCAAAGAAGGCATCTTATCTGTACGGGTGGTCGTGTGGAGAATGGATGGTCG
AGGATGCACACGGCGCAGATGGAGGCAGGGAACTTGCCTTCACCTGCATGGGCGGGCACT
CTGGTACTCACTGCCGTCCTGGGCCTCCAACTCGCCTCGCCCCTCCTCCTCCGCTCTGCG
CGCACTTACCTGATGAGACCTCGGAAATGCAGGATTTGCCTCGGAGTGGGTAATAATCTA
TGTACGTTTTGCAAGGGGCGAGGGAAGCAAGGAGGCCTGTTTACGGGGGAGCCGCTGGAA
AAATGTGGATTGTGTGGCGGCAGGGGTAGGCAATTGTGCGGCAAATGCAATGCTACAGGT
CTGGCCAACAGTTGGCTTTACAAGCCCCTCAACAACGGAGGCTGGGGACCTATGGGTGAC
TAAATCCCCCCTCCCCTAACACACTCACACAAGCGAAAAACAGAGGAAAATCTCTTTG
■■Homology search results ■■ -
sp_hit_id Q8C3L1
Definition sp|Q8C3L1|CC032_MOUSE Uncharacterized protein C3orf32 homolog OS=Mus musculus
Align length 25
Score (bit) 33.9
E-value 0.52
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946286|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_B17, 5'
         (538 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8C3L1|CC032_MOUSE Uncharacterized protein C3orf32 homolog OS...    34   0.52 
sp|Q9Y2M2|CC032_HUMAN Uncharacterized protein C3orf32 OS=Homo sa...    32   2.0  
sp|P63490|AMIA2_MYCTU Putative amidase amiA2 OS=Mycobacterium tu...    31   3.4  
sp|P63491|AMIA2_MYCBO Putative amidase amiA2 OS=Mycobacterium bo...    31   3.4  
sp|Q82TN2|MURA_NITEU UDP-N-acetylglucosamine 1-carboxyvinyltrans...    30   5.7  
sp|Q6P1G2|JHD1B_MOUSE JmjC domain-containing histone demethylati...    30   5.7  
sp|Q8NHM5|JHD1B_HUMAN JmjC domain-containing histone demethylati...    30   5.7  
sp|Q66H69|B3GN7_RAT UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosam...    30   9.7  

>sp|Q8C3L1|CC032_MOUSE Uncharacterized protein C3orf32 homolog
           OS=Mus musculus PE=2 SV=1
          Length = 340

 Score = 33.9 bits (76), Expect = 0.52
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 256 RPRKCRICLGVGNNLCTFCKGRGKQ 330
           +PR+C +C G G   C+ C GRG +
Sbjct: 212 QPRRCHLCSGSGRRRCSTCSGRGNK 236



 Score = 29.6 bits (65), Expect = 9.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 262 RKCRICLGVGNNLCTFCKGRGK 327
           R+C  C G GN  C  CKG  K
Sbjct: 225 RRCSTCSGRGNKTCATCKGERK 246


>sp|Q9Y2M2|CC032_HUMAN Uncharacterized protein C3orf32 OS=Homo
           sapiens GN=C3orf32 PE=2 SV=1
          Length = 353

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 238 ARTYLMRPRKCRICLGVGNNLCTFCKGRGKQ 330
           A+    + R+C++C G G   C+ C GRG +
Sbjct: 183 AKRKAKQSRRCQLCAGSGRRRCSTCSGRGNK 213



 Score = 29.6 bits (65), Expect = 9.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 262 RKCRICLGVGNNLCTFCKGRGK 327
           R+C  C G GN  C  CKG  K
Sbjct: 202 RRCSTCSGRGNKTCATCKGEKK 223


>sp|P63490|AMIA2_MYCTU Putative amidase amiA2 OS=Mycobacterium
           tuberculosis GN=amiA2 PE=3 SV=1
          Length = 484

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +1

Query: 97  GRVENGWSRMHTAQMEAGNLPSPAWAGTLVLTAVLGLQLASPLLLRSARTYL--MRPRKC 270
           G   N WSR HT    +G   +   AG  ++TA +G   A  + + +A T+L  ++P++ 
Sbjct: 152 GHTRNPWSRRHTPGGSSGGSAAAVAAG--LVTAAIGSDGAGSIRIPAAWTHLVGIKPQRG 209

Query: 271 RI 276
           RI
Sbjct: 210 RI 211


>sp|P63491|AMIA2_MYCBO Putative amidase amiA2 OS=Mycobacterium bovis
           GN=amiA2 PE=3 SV=1
          Length = 484

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +1

Query: 97  GRVENGWSRMHTAQMEAGNLPSPAWAGTLVLTAVLGLQLASPLLLRSARTYL--MRPRKC 270
           G   N WSR HT    +G   +   AG  ++TA +G   A  + + +A T+L  ++P++ 
Sbjct: 152 GHTRNPWSRRHTPGGSSGGSAAAVAAG--LVTAAIGSDGAGSIRIPAAWTHLVGIKPQRG 209

Query: 271 RI 276
           RI
Sbjct: 210 RI 211


>sp|Q82TN2|MURA_NITEU UDP-N-acetylglucosamine
           1-carboxyvinyltransferase OS=Nitrosomonas europaea
           GN=murA PE=3 SV=1
          Length = 417

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 130 TAQMEAGNLPSPAWAGTLVLTAVLGLQLASPLLLRSARTYLMRPRKCRI 276
           TA++ A ++ +P  +  +V T    + +  PLL R+ + Y+  P  C I
Sbjct: 71  TAELSAASITNPTASYDMVKTMRAAILVLGPLLARTGQAYISLPGGCAI 119


>sp|Q6P1G2|JHD1B_MOUSE JmjC domain-containing histone demethylation
           protein 1B OS=Mus musculus GN=Fbxl10 PE=1 SV=1
          Length = 1309

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +1

Query: 205 LQLASPLLLRSARTYLMRPRKCRICLGVGNNLCTFCKGRGKQGG 336
           ++LA+      AR    R RKC  CL      C FCK   K GG
Sbjct: 568 VKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGG 611


>sp|Q8NHM5|JHD1B_HUMAN JmjC domain-containing histone demethylation
           protein 1B OS=Homo sapiens GN=FBXL10 PE=1 SV=1
          Length = 1336

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +1

Query: 205 LQLASPLLLRSARTYLMRPRKCRICLGVGNNLCTFCKGRGKQGG 336
           ++LA+      AR    R RKC  CL      C FCK   K GG
Sbjct: 595 VKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGG 638


>sp|Q66H69|B3GN7_RAT UDP-GlcNAc:betaGal
           beta-1,3-N-acetylglucosaminyltransferase 7 OS=Rattus
           norvegicus GN=B3gnt7 PE=2 SV=1
          Length = 397

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 353 GSPVNRPPCFPRPLQNVHRLLP 288
           GS +N+ PCF R +  VH+LLP
Sbjct: 353 GSRMNKEPCFYRSMLVVHKLLP 374
tr_hit_id A8IA01
Definition tr|A8IA01|A8IA01_CHLRE Predicted protein OS=Chlamydomonas reinhardtii
Align length 78
Score (bit) 70.9
E-value 4.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946286|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_B17, 5'
         (538 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8IA01|A8IA01_CHLRE Predicted protein OS=Chlamydomonas reinha...    71   4e-11
tr|A9V5J5|A9V5J5_MONBE Predicted protein OS=Monosiga brevicollis...    39   0.23 
tr|A8IXN3|A8IXN3_CHLRE DnaJ-like zinc-finger protein OS=Chlamydo...    34   4.3  
tr|Q4QBT4|Q4QBT4_LEIMA Putative uncharacterized protein OS=Leish...    34   4.3  
tr|B7BQA9|B7BQA9_9CLOT Putative uncharacterized protein OS=Clost...    34   5.6  
tr|Q08C76|Q08C76_DANRE Zgc:153440 OS=Danio rerio GN=zgc:153440 P...    33   7.3  
tr|A3CBJ4|A3CBJ4_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.5  

>tr|A8IA01|A8IA01_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_155293 PE=4 SV=1
          Length = 84

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 32/78 (41%), Positives = 40/78 (51%)
 Frame = +1

Query: 244 TYLMRPRKCRICLGVGNNLCTFCKGRGKQGGLFTGEPLEXXXXXXXXXXXXXXXXNATGL 423
           T  M+PRKC+ C G G   C  C GRG+ GG+F G+  +                  TGL
Sbjct: 6   TDYMKPRKCQSCYGAGYTPCPTCHGRGRLGGVFQGQQAQPCDTCGSRGRVRCQPCQHTGL 65

Query: 424 ANSWLYKPLNNGGWGPMG 477
           AN WL++P  NGGWG  G
Sbjct: 66  ANYWLWQPSENGGWGARG 83


>tr|A9V5J5|A9V5J5_MONBE Predicted protein OS=Monosiga brevicollis
           GN=10213 PE=4 SV=1
          Length = 450

 Score = 38.5 bits (88), Expect = 0.23
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +1

Query: 142 EAGNLPSPAWAGTLVLTAVLGLQLASPLLLRSART---YLMRPRKCRICLGVGNNLCTFC 312
           E G  P P WA        +G+    P ++   R    +  R   C  C G+GN +CTFC
Sbjct: 190 ERGLAPHP-WA--------IGVMTPHPFVVSEDRKPVPHTSRVHACNNCAGLGNIMCTFC 240

Query: 313 KGRGK 327
           +GRG+
Sbjct: 241 QGRGR 245


>tr|A8IXN3|A8IXN3_CHLRE DnaJ-like zinc-finger protein
           OS=Chlamydomonas reinhardtii GN=ZNJ2 PE=4 SV=1
          Length = 133

 Score = 34.3 bits (77), Expect = 4.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 253 MRPRKCRICLGVGNNLCTFCKGRGKQ 330
           + PR C++C G G  LC+ CKG G Q
Sbjct: 105 INPRDCKVCRGAGLVLCSQCKGTGFQ 130


>tr|Q4QBT4|Q4QBT4_LEIMA Putative uncharacterized protein
           OS=Leishmania major GN=LmjF22.0630 PE=4 SV=1
          Length = 1141

 Score = 34.3 bits (77), Expect = 4.3
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = -2

Query: 366 TFFQRLPRKQASLLPSPLAKRT*IITHSEANPAFPRS 256
           + F RLP++  SLL +P+A RT +IT +EA P+  R+
Sbjct: 278 SIFVRLPQQNPSLLDTPVAGRTGLITAAEAAPSIFRT 314


>tr|B7BQA9|B7BQA9_9CLOT Putative uncharacterized protein
           OS=Clostridium hylemonae DSM 15053 GN=CLOHYLEM_02752
           PE=4 SV=1
          Length = 243

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 268 CRICLGVGNNLCTFCKGRGKQGG 336
           C  C G G N CT C+G+GK  G
Sbjct: 91  CPTCKGAGQNFCTICEGKGKVEG 113


>tr|Q08C76|Q08C76_DANRE Zgc:153440 OS=Danio rerio GN=zgc:153440 PE=2
           SV=1
          Length = 361

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 262 RKCRICLGVGNNLCTFCKGRGKQ 330
           + C +CLG+GN  CT C G G +
Sbjct: 164 KNCHVCLGMGNKPCTTCAGAGNK 186


>tr|A3CBJ4|A3CBJ4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032666 PE=4 SV=1
          Length = 784

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 22/56 (39%), Positives = 29/56 (51%)
 Frame = +1

Query: 115 WSRMHTAQMEAGNLPSPAWAGTLVLTAVLGLQLASPLLLRSARTYLMRPRKCRICL 282
           W       M A NLP  AWA  L+   ++ + LA   LLR+AR    RP KCR+ +
Sbjct: 143 WDAYAMLGMVASNLP--AWAHNLLSILLILVPLAIGQLLRAAR----RPTKCRLIM 192