DK946269 |
Clone id |
YMU02A01NGRL0012_A18 |
Library |
YMU02 |
Length |
592 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_A18. 5' end sequence. |
Accession |
DK946269 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL622Contig1 |
Sequence |
AGACCAACTGAGCATTCTTTGTCTGTGAACTGTATACATCCTTGTAGATAATTTATCTCT GAGAGCATTTGGCTGCCAGGAAGATAAGGTGGCGCCTGTTTGATGTCGTCCAGCCTGACG ATGGCTACCTCGTCCCCTCTGGCCACTTCTGTGTCAGGTTTCACAACTGATCTTGATGAC AAGTGGTTAAGTCCTGGTATCAACTCTCTATCAACAAGAAGAACCAGTACGAAAAAGCTT GGGTTTGCCTCATGTCAAGCCTTGGGTAGTGGTATGTTGTCGTCAGGTAGCTCCAGGGGG ACCCGGACATCAAGACAGGGCCACTTAGTTGGTGTAGCACGCTGTGAAGTAAGTGAAGAA AAGAGTAACAGTTTGGACATATGGCTAGGACGTGCAGCCATGCTAGGGTTTGTCAGTGTG GTCTCCGTTGAAGTTGCCACCGGAAAAGGAGTTCTAGAGAATGCAGGTTTGGTAGCTCCT CTTCCTACGTTGGCATTGGCATTGACGGCTGTCGTGGGGGTAGTTGTAGCTTTTGGAATC TTCCGGTCCGCTAATACTGACAGCTAGTGGCAGAATTCGAGAACTCTCTTCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q1XDD2 |
Definition |
sp|Q1XDD2|YCF17_PORYE Uncharacterized protein ycf17 OS=Porphyra yezoensis |
Align length |
31 |
Score (bit) |
40.4 |
E-value |
0.007 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946269|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0012_A18, 5' (592 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q1XDD2|YCF17_PORYE Uncharacterized protein ycf17 OS=Porphyra ... 40 0.007 sp|P51355|YCF17_PORPU Uncharacterized protein ycf17 OS=Porphyra ... 39 0.020 sp|Q3MCT9|HEMH_ANAVT Ferrochelatase OS=Anabaena variabilis (stra... 36 0.17 sp|Q8YQR8|HEMH_ANASP Ferrochelatase OS=Anabaena sp. (strain PCC ... 36 0.17 sp|Q55GU9|MSH6_DICDI DNA mismatch repair protein Msh6 OS=Dictyos... 35 0.37 sp|O04921|HEMH2_ARATH Ferrochelatase-2, chloroplastic OS=Arabido... 34 0.48 sp|Q01931|DS22_CRAPL Desiccation stress protein DSP-22, chloropl... 33 1.1 sp|Q0DIV0|HEMH_ORYSJ Ferrochelatase-2, chloroplastic OS=Oryza sa... 33 1.4 sp|A2Y3Q5|HEMH_ORYSI Ferrochelatase-2, chloroplastic OS=Oryza sa... 33 1.4 sp|B0JRN7|HEMH_MICAN Ferrochelatase OS=Microcystis aeruginosa (s... 32 2.4 sp|P11432|ELI_PEA Early light-induced protein, chloroplastic OS=... 32 2.4 sp|P14895|ELI5_HORVU High molecular mass early light-inducible p... 32 2.4 sp|P48367|YCF17_CYAPA Uncharacterized protein ycf17 OS=Cyanophor... 32 3.1 sp|Q5N2B2|HEMH_SYNP6 Ferrochelatase OS=Synechococcus sp. (strain... 32 3.1 sp|Q31S00|HEMH_SYNE7 Ferrochelatase OS=Synechococcus elongatus (... 32 3.1 sp|P27516|CBR_DUNBA Carotene biosynthesis-related protein CBR, c... 32 3.1 sp|A5GS98|HEMH_SYNR3 Ferrochelatase OS=Synechococcus sp. (strain... 31 4.1 sp|Q54PP7|LVSF_DICDI BEACH domain-containing protein lvsF OS=Dic... 31 5.3 sp|Q9SMB4|PSBS_TOBAC Photosystem II 22 kDa protein, chloroplasti... 31 5.3 sp|Q9FPP4|PSBS_SOLSG Photosystem II 22 kDa protein, chloroplasti... 31 5.3 sp|P54773|PSBS_SOLLC Photosystem II 22 kDa protein, chloroplasti... 31 5.3 sp|Q9XF91|PSBS_ARATH Photosystem II 22 kDa protein, chloroplasti... 31 5.3 sp|P54225|HEMH_SYNY3 Ferrochelatase OS=Synechocystis sp. (strain... 31 5.3 sp|Q7U5G0|HEMH_SYNPX Ferrochelatase OS=Synechococcus sp. (strain... 30 9.1 sp|P14897|ELI9_HORVU Low molecular mass early light-inducible pr... 30 9.1
>sp|Q1XDD2|YCF17_PORYE Uncharacterized protein ycf17 OS=Porphyra yezoensis GN=ycf17 PE=3 SV=1 Length = 48
Score = 40.4 bits (93), Expect = 0.007 Identities = 16/31 (51%), Positives = 25/31 (80%) Frame = +1
Query: 364 SNSLDIWLGRAAMLGFVSVVSVEVATGKGVL 456 ++S + W GR AM+GF+SV+ +EV TG+G+L Sbjct: 11 TDSAETWNGRFAMIGFISVIFIEVVTGQGLL 41
>sp|P51355|YCF17_PORPU Uncharacterized protein ycf17 OS=Porphyra purpurea GN=ycf17 PE=3 SV=1 Length = 48
Score = 38.9 bits (89), Expect = 0.020 Identities = 15/31 (48%), Positives = 25/31 (80%) Frame = +1
Query: 364 SNSLDIWLGRAAMLGFVSVVSVEVATGKGVL 456 ++S + W GR AM+GF++V+ +E+ TGKG+L Sbjct: 11 TDSAETWNGRFAMIGFMAVIFIELVTGKGLL 41
>sp|Q3MCT9|HEMH_ANAVT Ferrochelatase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=hemH PE=3 SV=1 Length = 388
Score = 35.8 bits (81), Expect = 0.17 Identities = 14/31 (45%), Positives = 26/31 (83%) Frame = +1
Query: 364 SNSLDIWLGRAAMLGFVSVVSVEVATGKGVL 456 ++S ++W GR AMLGF++++ +E+ TG+G+L Sbjct: 352 TSSAEVWNGRIAMLGFIALI-IELVTGQGLL 381
>sp|Q8YQR8|HEMH_ANASP Ferrochelatase OS=Anabaena sp. (strain PCC 7120) GN=hemH PE=3 SV=1 Length = 388
Score = 35.8 bits (81), Expect = 0.17 Identities = 14/31 (45%), Positives = 26/31 (83%) Frame = +1
Query: 364 SNSLDIWLGRAAMLGFVSVVSVEVATGKGVL 456 ++S ++W GR AMLGF++++ +E+ TG+G+L Sbjct: 352 TSSAEVWNGRIAMLGFIALI-IELVTGQGLL 381
>sp|Q55GU9|MSH6_DICDI DNA mismatch repair protein Msh6 OS=Dictyostelium discoideum GN=msh6 PE=3 SV=1 Length = 1260
Score = 34.7 bits (78), Expect = 0.37 Identities = 19/38 (50%), Positives = 24/38 (63%) Frame = -3
Query: 437 ATSTETTLTNPSMAARPSHMSKLLLFSSLTSQRATPTK 324 AT+T TT TN + P+ SKL L +S TS+ TPTK Sbjct: 75 ATTTTTTNTNSQIPKAPTTPSKLKLPTSFTSKSNTPTK 112
>sp|O04921|HEMH2_ARATH Ferrochelatase-2, chloroplastic OS=Arabidopsis thaliana GN=At2g30390 PE=2 SV=1 Length = 512
Score = 34.3 bits (77), Expect = 0.48 Identities = 15/31 (48%), Positives = 22/31 (70%) Frame = +1
Query: 364 SNSLDIWLGRAAMLGFVSVVSVEVATGKGVL 456 + S + W GRAAML ++++ +EV TGKG L Sbjct: 473 TKSAETWNGRAAMLAVLALLVLEVTTGKGFL 503
>sp|Q01931|DS22_CRAPL Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1 Length = 199
Score = 33.1 bits (74), Expect = 1.1 Identities = 14/22 (63%), Positives = 19/22 (86%) Frame = +1
Query: 388 GRAAMLGFVSVVSVEVATGKGV 453 GR+AM+GFV+ V VE+ATG+ V Sbjct: 104 GRSAMIGFVAAVGVELATGRDV 125
>sp|Q0DIV0|HEMH_ORYSJ Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. japonica GN=HEMH PE=2 SV=1 Length = 526
Score = 32.7 bits (73), Expect = 1.4 Identities = 14/31 (45%), Positives = 22/31 (70%) Frame = +1
Query: 364 SNSLDIWLGRAAMLGFVSVVSVEVATGKGVL 456 + S + W GRAAML ++++ +EV TG+G L Sbjct: 486 TKSAETWNGRAAMLAVLALLVLEVTTGEGFL 516
>sp|A2Y3Q5|HEMH_ORYSI Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. indica GN=HEMH PE=2 SV=2 Length = 526
Score = 32.7 bits (73), Expect = 1.4 Identities = 14/31 (45%), Positives = 22/31 (70%) Frame = +1
Query: 364 SNSLDIWLGRAAMLGFVSVVSVEVATGKGVL 456 + S + W GRAAML ++++ +EV TG+G L Sbjct: 486 TKSAETWNGRAAMLAVLALLVLEVTTGEGFL 516
>sp|B0JRN7|HEMH_MICAN Ferrochelatase OS=Microcystis aeruginosa (strain NIES-843) GN=hemH PE=3 SV=1 Length = 387
Score = 32.0 bits (71), Expect = 2.4 Identities = 12/31 (38%), Positives = 24/31 (77%) Frame = +1
Query: 364 SNSLDIWLGRAAMLGFVSVVSVEVATGKGVL 456 + + ++W GR AM+GF++++ +E+ TG+G L Sbjct: 352 TTAAEVWNGRLAMIGFLAII-IELITGQGPL 381
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NK68 |
Definition |
tr|A9NK68|A9NK68_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
82 |
Score (bit) |
68.2 |
E-value |
3.0e-10 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946269|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0012_A18, 5' (592 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NK68|A9NK68_PICSI Putative uncharacterized protein OS=Picea... 68 3e-10 tr|A5B423|A5B423_VITVI Putative uncharacterized protein (Chromos... 62 2e-08 tr|B6SRW4|B6SRW4_MAIZE Putative uncharacterized protein OS=Zea m... 59 2e-07 tr|B6SQP2|B6SQP2_MAIZE Putative uncharacterized protein OS=Zea m... 57 8e-07 tr|A8IXP9|A8IXP9_BRACM Stress enhanced protein 1 OS=Brassica cam... 57 1e-06 tr|Q9M7I9|Q9M7I9_ARATH Stress enhanced protein 1 (At4g34190/F28A... 56 2e-06 tr|O49486|O49486_ARATH Putative uncharacterized protein AT4g3419... 56 2e-06 tr|A9PFE3|A9PFE3_POPTR Putative uncharacterized protein OS=Popul... 56 2e-06 tr|B6U7S0|B6U7S0_MAIZE Putative uncharacterized protein OS=Zea m... 55 4e-06 tr|A9TLE2|A9TLE2_PHYPA Predicted protein OS=Physcomitrella paten... 53 1e-05 tr|Q8L574|Q8L574_ORYSJ Putative stress enhanced protein (Express... 50 7e-05 tr|Q109Q6|Q109Q6_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 50 7e-05 tr|A3C4F7|A3C4F7_ORYSJ Putative uncharacterized protein OS=Oryza... 50 7e-05 tr|A2Z6X7|A2Z6X7_ORYSI Putative uncharacterized protein OS=Oryza... 50 7e-05 tr|Q109Q5|Q109Q5_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 47 0.001 tr|Q9SWB0|Q9SWB0_CAPAN Differentially expressed osmotic protein ... 42 0.020 tr|B4WNV1|B4WNV1_9SYNE Putative uncharacterized protein OS=Synec... 41 0.045 tr|A8YCW9|A8YCW9_MICAE Similarity to tr|Q9SI74|Q9SI74 (Fragment)... 38 0.49 tr|Q5W9T0|Q5W9T0_CHLRE Lhc-like protein Lhl4 (High intensity lig... 38 0.50 tr|Q2R123|Q2R123_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 38 0.50 tr|A2ZGG1|A2ZGG1_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.50 tr|Q4BUR3|Q4BUR3_CROWT CAB/ELIP/HLIP superfamily OS=Crocosphaera... 37 0.85 tr|Q6A949|Q6A949_PROAC Transcriptional regulator OS=Propionibact... 37 1.1 tr|Q3M909|Q3M909_ANAVT CAB/ELIP/HLIP superfamily OS=Anabaena var... 37 1.1 tr|B1WXE9|B1WXE9_CYAA5 Putative CAB/ELIP/HLIP superfamily protei... 37 1.1 tr|A5CB09|A5CB09_VITVI Putative uncharacterized protein OS=Vitis... 36 1.4 tr|Q7U690|Q7U690_SYNPX Possible high light inducible protein OS=... 36 1.4 tr|B0CFS4|B0CFS4_ACAM1 CAB/ELIP/HLIP superfamily protein, putati... 36 1.4 tr|B0BZB3|B0BZB3_ACAM1 High light inducible protein OS=Acaryochl... 36 1.4 tr|A8ZP26|A8ZP26_ACAM1 CAB/ELIP/HLIP superfamily protein, putati... 36 1.4
>tr|A9NK68|A9NK68_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 153
Score = 68.2 bits (165), Expect = 3e-10 Identities = 38/82 (46%), Positives = 47/82 (57%) Frame = +1
Query: 316 QGHLVGVARCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLENXXXXXXXXXXX 495 +G LVGV RCE S E +NSLDIWLGR AML FV+ +++E+ TGKGVL+N Sbjct: 73 RGVLVGV-RCEQSTEGNNSLDIWLGRFAMLSFVAAITIEITTGKGVLQNIGLTAPLPTVS 131
Query: 496 XXXXXXXXXXXXFGIFRSANTD 561 F IFRS + D Sbjct: 132 LGLVTAVGVVVAFKIFRSGSED 153
>tr|A5B423|A5B423_VITVI Putative uncharacterized protein (Chromosome chr3 scaffold_8, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00036647001 PE=4 SV=1 Length = 148
Score = 62.4 bits (150), Expect = 2e-08 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = +1
Query: 340 RCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 462 RCE S + NSLD+WLGR AM+GF +SVE+ATGKG+LEN Sbjct: 75 RCEQSANEGNSLDVWLGRLAMVGFAVAISVEIATGKGLLEN 115
>tr|B6SRW4|B6SRW4_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 127
Score = 58.9 bits (141), Expect = 2e-07 Identities = 26/45 (57%), Positives = 33/45 (73%) Frame = +1
Query: 328 VGVARCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 462 + + RCE S +K D WLGRAAM+GF S ++VEVATGKG L+N Sbjct: 48 LSIIRCEQSAKKGGGPDTWLGRAAMVGFASAIAVEVATGKGFLQN 92
>tr|B6SQP2|B6SQP2_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 127
Score = 57.0 bits (136), Expect = 8e-07 Identities = 25/45 (55%), Positives = 33/45 (73%) Frame = +1
Query: 328 VGVARCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 462 + + RCE S +K D WLGRAAM+GF S ++VEVATGKG L++ Sbjct: 46 LSIIRCEQSAKKGGGPDTWLGRAAMVGFASAIAVEVATGKGFLQS 90
>tr|A8IXP9|A8IXP9_BRACM Stress enhanced protein 1 OS=Brassica campestris PE=2 SV=1 Length = 146
Score = 56.6 bits (135), Expect = 1e-06 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = +1
Query: 340 RCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 462 R E S E + LDIWLGR AM+GF +SVE+ATGKG+LEN Sbjct: 73 RSEQSTEGGSGLDIWLGRGAMVGFAVAISVEIATGKGLLEN 113
>tr|Q9M7I9|Q9M7I9_ARATH Stress enhanced protein 1 (At4g34190/F28A23_50) (Putative uncharacterized protein) OS=Arabidopsis thaliana GN=SEP1 PE=2 SV=1 Length = 146
Score = 55.8 bits (133), Expect = 2e-06 Identities = 25/41 (60%), Positives = 32/41 (78%) Frame = +1
Query: 340 RCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 462 R E S E S+ LDIWLGR AM+GF ++VE++TGKG+LEN Sbjct: 73 RSEQSTEGSSGLDIWLGRGAMVGFAVAITVEISTGKGLLEN 113
>tr|O49486|O49486_ARATH Putative uncharacterized protein AT4g34190 OS=Arabidopsis thaliana GN=AT4g34190 PE=2 SV=1 Length = 134
Score = 55.8 bits (133), Expect = 2e-06 Identities = 25/41 (60%), Positives = 32/41 (78%) Frame = +1
Query: 340 RCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 462 R E S E S+ LDIWLGR AM+GF ++VE++TGKG+LEN Sbjct: 61 RSEQSTEGSSGLDIWLGRGAMVGFAVAITVEISTGKGLLEN 101
>tr|A9PFE3|A9PFE3_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 145
Score = 55.8 bits (133), Expect = 2e-06 Identities = 22/41 (53%), Positives = 32/41 (78%) Frame = +1
Query: 340 RCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 462 RCE + + +S+D+W+GR AM+ F +SVE+ATGKG+LEN Sbjct: 72 RCEQNTQDGSSVDVWIGRLAMVAFAGAISVEIATGKGLLEN 112
>tr|B6U7S0|B6U7S0_MAIZE Putative uncharacterized protein OS=Zea mays PE=4 SV=1 Length = 118
Score = 54.7 bits (130), Expect = 4e-06 Identities = 24/41 (58%), Positives = 29/41 (70%) Frame = +1
Query: 340 RCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 462 RCE + LD+WL R AMLGFV V+VE+ TGKGVL+N Sbjct: 45 RCEQGAKGGGGLDVWLSRGAMLGFVGAVAVELTTGKGVLQN 85
>tr|A9TLE2|A9TLE2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=p1 PE=4 SV=1 Length = 157
Score = 52.8 bits (125), Expect = 1e-05 Identities = 24/43 (55%), Positives = 33/43 (76%), Gaps = 2/43 (4%) Frame = +1
Query: 340 RCEVSEEKSN--SLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 462 RC+ S E N SLD W+GR AMLGFV+ + +E+++GKGVLE+ Sbjct: 82 RCDQSTEGGNRRSLDTWIGRFAMLGFVAAIGIEISSGKGVLES 124
|