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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946240
Clone id YMU02A01NGRL0011_P03
Library
Length 458
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_P03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GATCTCAAAGCCTTTTCAATCTCTTTAGACGAAACTGACCTGGGTCAGATAAATGAGATT
TTACAAGAGAGCAAAGGCCCAAAAGGAGACTGCTATGAGTTGGAAAGGAACGTCTTTTGA
TGCCACGGCTTCAAGGGTTCAGACTCACTGGCTTTCTGTGTATGAATGGCATTTAGTGTT
GTACCTATGGCTGGTGATGAGGAATGCATGTATCACTGCAACAGAAAAGGTCATTCTGAG
CCTCATTGAGAAGAGTTCATTTTGACACATGAATACTCTAGGCATCCTCATGGTGGAACA
TTACATCCATAGAGTGAGACTTTGTCCGCTTGTCTATTTTAGTCTCTTGGATGCTTGTAT
GTTCTGAGCTCATTGACTGTTGTTTTGGTTGTCATGGTGGTCAAGAGTTAAAGGCTATGT
ATTGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q88CN0
Definition sp|Q88CN0|RPIA_PSEPK Ribose-5-phosphate isomerase A OS=Pseudomonas putida (strain KT2440)
Align length 40
Score (bit) 29.3
E-value 7.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946240|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_P03, 5'
         (428 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q88CN0|RPIA_PSEPK Ribose-5-phosphate isomerase A OS=Pseudomon...    29   7.0  
sp|B0KP28|RPIA_PSEPG Ribose-5-phosphate isomerase A OS=Pseudomon...    29   7.0  
sp|A5WAL5|RPIA_PSEP1 Ribose-5-phosphate isomerase A OS=Pseudomon...    29   7.0  
sp|Q1I3B8|RPIA_PSEE4 Ribose-5-phosphate isomerase A OS=Pseudomon...    29   7.0  

>sp|Q88CN0|RPIA_PSEPK Ribose-5-phosphate isomerase A OS=Pseudomonas
           putida (strain KT2440) GN=rpiA PE=3 SV=1
          Length = 224

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 59  FYKRAKAQKETAMSWKGTSFDATASRVQTHWLSVYEWHLV 178
           F+  A AQ +TA      S +ATA R++ H + VYE + V
Sbjct: 38  FFIDALAQHKTAFDGAVASSEATAQRLKGHGIPVYELNSV 77


>sp|B0KP28|RPIA_PSEPG Ribose-5-phosphate isomerase A OS=Pseudomonas
           putida (strain GB-1) GN=rpiA PE=3 SV=1
          Length = 224

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 59  FYKRAKAQKETAMSWKGTSFDATASRVQTHWLSVYEWHLV 178
           F+  A AQ +TA      S +ATA R++ H + VYE + V
Sbjct: 38  FFIDALAQHKTAFDGAVASSEATAQRLKGHGIPVYELNSV 77


>sp|A5WAL5|RPIA_PSEP1 Ribose-5-phosphate isomerase A OS=Pseudomonas
           putida (strain F1 / ATCC 700007) GN=rpiA PE=3 SV=1
          Length = 224

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 59  FYKRAKAQKETAMSWKGTSFDATASRVQTHWLSVYEWHLV 178
           F+  A AQ +TA      S +ATA R++ H + VYE + V
Sbjct: 38  FFIDALAQHKTAFDGAVASSEATAQRLKGHGIPVYELNSV 77


>sp|Q1I3B8|RPIA_PSEE4 Ribose-5-phosphate isomerase A OS=Pseudomonas
           entomophila (strain L48) GN=rpiA PE=3 SV=1
          Length = 224

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 59  FYKRAKAQKETAMSWKGTSFDATASRVQTHWLSVYEWHLV 178
           F+  A AQ +TA      S +ATA R++ H + VYE + V
Sbjct: 38  FFIDALAQHKTAFDGAVASSEATAQRLKGHGIPVYELNSV 77
tr_hit_id A5V463
Definition tr|A5V463|A5V463_SPHWW Aldo/keto reductase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)
Align length 36
Score (bit) 42.0
E-value 0.015
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946240|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_P03, 5'
         (428 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5V463|A5V463_SPHWW Aldo/keto reductase OS=Sphingomonas witti...    42   0.015
tr|A8J654|A8J654_CHLRE Predicted protein (Fragment) OS=Chlamydom...    40   0.077
tr|A8IS90|A8IS90_CHLRE Aldo/keto reductase OS=Chlamydomonas rein...    39   0.17 
tr|A4AP98|A4AP98_9FLAO Putative uncharacterized protein OS=Flavo...    35   1.4  
tr|Q986W6|Q986W6_RHILO Mlr7180 protein OS=Rhizobium loti GN=mlr7...    34   4.2  
tr|A8I028|A8I028_AZOC5 Conserved putative membrane protein OS=Az...    33   9.4  

>tr|A5V463|A5V463_SPHWW Aldo/keto reductase OS=Sphingomonas
           wittichii (strain RW1 / DSM 6014 / JCM 10273)
           GN=Swit_0712 PE=4 SV=1
          Length = 380

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = +1

Query: 1   DLKAFSISLDETDLGQINEILQESKGPKGDCYELER 108
           +LK F  +LDE D   I+ +L  S GP GDCY+L+R
Sbjct: 303 NLKLFEFALDEEDRQAIDAVLARSTGPAGDCYDLDR 338


>tr|A8J654|A8J654_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_176301 PE=4
           SV=1
          Length = 377

 Score = 39.7 bits (91), Expect = 0.077
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +1

Query: 7   KAFSISLDETDLGQINEILQESKGPKGDCYELER 108
           +  +++LD++DL  I+ +L  S GP GDCY  ER
Sbjct: 342 RVLALTLDDSDLAAIDAVLARSTGPTGDCYSFER 375


>tr|A8IS90|A8IS90_CHLRE Aldo/keto reductase OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_128621 PE=4 SV=1
          Length = 416

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 7   KAFSISLDETDLGQINEILQESKGPKGDCYELER 108
           + FS  LD  DLG I+E+L   + P+ DCY  ER
Sbjct: 379 RLFSFRLDADDLGAIDEVLARGRRPRSDCYSWER 412


>tr|A4AP98|A4AP98_9FLAO Putative uncharacterized protein
           OS=Flavobacteriales bacterium HTCC2170 GN=FB2170_06015
           PE=4 SV=1
          Length = 347

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +1

Query: 22  SLDETDLGQINEILQESKGPKGDCYELERNVF*CHG 129
           +L E DL  I  I+ +SKGPKG  Y LER+    HG
Sbjct: 302 TLKEEDLQMIERIVAQSKGPKGPFYHLERDKNGKHG 337


>tr|Q986W6|Q986W6_RHILO Mlr7180 protein OS=Rhizobium loti GN=mlr7180
           PE=4 SV=1
          Length = 351

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 7   KAFSISLDETDLGQINEILQESKGPKGDCYELERNVF*CHG 129
           +   ++LD  D  +I  ++ +S+GP GD Y LER+    HG
Sbjct: 299 RIMDVALDADDRAKIAAVIAQSQGPLGDVYTLERDRHGRHG 339


>tr|A8I028|A8I028_AZOC5 Conserved putative membrane protein
           OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
           5975 / ORS 571) GN=AZC_4658 PE=4 SV=1
          Length = 861

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +2

Query: 71  AKAQKETAMSWKGTSFDATASRVQTHWLSVYEWHLVLYLWLVMRNACITATEKVILSLIE 250
           ++A     +SW   +  AT +R    WL      LVL+ WL++  A  +A +    S + 
Sbjct: 242 SRAGDPVVLSWTSPAPGATVTRAVMPWLLACGGTLVLFTWLILARASASARQMEAASRVM 301

Query: 251 KSS 259
           + S
Sbjct: 302 QES 304