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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946140
Clone id YMU02A01NGRL0011_J18
Library
Length 628
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_J18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGTGCAGAAGAGCTGCAGCAGAAAAATATGGCTTCCCTGCCCATGCAAGCTCTACTCTCA
TGGCTGCTGCTGTTGCTGCTTGCAAGCAGCGTGCAGGCAAACTACTACGGCGGCGGATCG
AGCCCCGTGACCAAGCCACCAGAGTACAAGGCACCCAAGGAGAAGGCCCCTGAGTACAAG
CCGCCCGTATACAAGGCGCCCAAGGAGAAATCCCCTGTGTACAAGCCTCCGATGGAGAAG
CCTCCGATGGAGAAACCTCCGATGGAGAAGCCGCCGATGGAGAAGCCTCCGATGGAGAAG
CCGCCTATGGAGAAACCTCCGATGGAGAAACCTCCGATGGAGAAGCCGCCTATGGAGAAG
CCGCCTATGGAGAAACCTCCGATGGAGAAGCCGCCGATGGAGAAGCCTCCGATGGAGAAG
CCGCCGATGGAGAAGCCGCCTATGGAGAAACCTCCGATGGAGAAGCCGCCGATGGAGAAG
CCTCCGATGGAGAAGCCCCCAGTGTACAAACCCCCGGTGGAGAAGCCACCTGTGTACAAA
CCCCCTTTCTACAAGCCCGGCCCCTACCACAAGCACCCCTCCCTTCCCTAAATTTCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q10778
Definition sp|Q10778|PPE21_MYCTU Uncharacterized PPE family protein PPE21 OS=Mycobacterium tuberculosis
Align length 33
Score (bit) 30.0
E-value 9.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946140|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_J18, 5'
         (596 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q10778|PPE21_MYCTU Uncharacterized PPE family protein PPE21 O...    30   9.2  

>sp|Q10778|PPE21_MYCTU Uncharacterized PPE family protein PPE21
           OS=Mycobacterium tuberculosis GN=ppe21 PE=3 SV=2
          Length = 678

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -1

Query: 218 TGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           TGDF+ G + TG   SG  + G   SG L TGL
Sbjct: 517 TGDFNSGNVNTGYFNSGNINTGFFNSGDLNTGL 549
tr_hit_id A7RX60
Definition tr|A7RX60|A7RX60_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis
Align length 35
Score (bit) 37.7
E-value 0.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946140|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_J18, 5'
         (596 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7RX60|A7RX60_NEMVE Predicted protein (Fragment) OS=Nematoste...    38   0.50 
tr|Q941W7|Q941W7_ORYSJ Putative uncharacterized protein B1088C09...    35   4.3  
tr|A7SCE9|A7SCE9_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   7.3  
tr|Q47K88|Q47K88_THEFY Putative membrane protein OS=Thermobifida...    33   9.5  
tr|A2GJ62|A2GJ62_TRIVA Salivary glue protein Sgs-3-related prote...    33   9.5  

>tr|A7RX60|A7RX60_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g163707 PE=4 SV=1
          Length = 533

 Score = 37.7 bits (86), Expect = 0.50
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TGG ++GA S G  ++G L TG+
Sbjct: 344 LCTGGYFTGALSTGGYFTGALSTGVCFTGALSTGV 378



 Score = 37.0 bits (84), Expect = 0.86
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TGG ++GA S G  ++G L TG+
Sbjct: 134 LCTGVYFTGALSTGGYFTGALSTGVYFTGALSTGV 168



 Score = 37.0 bits (84), Expect = 0.86
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TGG ++GA S G  ++G L TG+
Sbjct: 334 LCTGVYFTGALCTGGYFTGALSTGGYFTGALSTGV 368



 Score = 35.4 bits (80), Expect = 2.5
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L+TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 34  LFTGVYFTGALCTGVYFTGALSTGVYFTGALSTGV 68



 Score = 34.7 bits (78), Expect = 4.3
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 144 LSTGGYFTGALSTGVYFTGALSTGVYFTGALCTGV 178



 Score = 34.7 bits (78), Expect = 4.3
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 354 LSTGGYFTGALSTGVCFTGALSTGVYFTGALCTGV 388



 Score = 34.3 bits (77), Expect = 5.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 221 YTGDFSLGALYTGGLYSGAFSLGALYSGGLVTG 123
           +TG  S G  +TG L +G +  GAL +GG  TG
Sbjct: 120 FTGALSTGVYFTGALCTGVYFTGALSTGGYFTG 152



 Score = 33.9 bits (76), Expect = 7.3
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 4   LCTGVYFTGALSTGVYFTGALSTGVYFTGALFTGV 38



 Score = 33.9 bits (76), Expect = 7.3
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 104 LSTGVYFTGALSTGVYFTGALSTGVYFTGALCTGV 138



 Score = 33.9 bits (76), Expect = 7.3
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 224 LSTGVYFTGALSTGVYFTGALSTGVCFTGALCTGV 258



 Score = 33.9 bits (76), Expect = 7.3
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 294 LSTGVYFTGALSTGVYFTGALSTGVCFTGALCTGV 328



 Score = 33.9 bits (76), Expect = 7.3
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 374 LSTGVYFTGALCTGVCFTGALSTGVYFTGALCTGV 408



 Score = 33.9 bits (76), Expect = 7.3
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 404 LCTGVYFTGALCTGVCFTGALSTGVYFTGALCTGV 438



 Score = 33.9 bits (76), Expect = 7.3
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 424 LSTGVYFTGALCTGVYFTGALSTGVCFTGALCTGV 458



 Score = 33.5 bits (75), Expect = 9.5
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL+TG  ++GA   G  ++G L TG+
Sbjct: 24  LSTGVYFTGALFTGVYFTGALCTGVYFTGALSTGV 58



 Score = 33.5 bits (75), Expect = 9.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 44  LCTGVYFTGALSTGVYFTGALSTGVYFTGALSTGV 78



 Score = 33.5 bits (75), Expect = 9.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 54  LSTGVYFTGALSTGVYFTGALSTGVYFTGALSTGV 88



 Score = 33.5 bits (75), Expect = 9.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 64  LSTGVYFTGALSTGVYFTGALSTGVYFTGALSTGV 98



 Score = 33.5 bits (75), Expect = 9.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 74  LSTGVYFTGALSTGVYFTGALSTGVCFTGALSTGV 108



 Score = 33.5 bits (75), Expect = 9.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 84  LSTGVYFTGALSTGVCFTGALSTGVYFTGALSTGV 118



 Score = 33.5 bits (75), Expect = 9.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 124 LSTGVYFTGALCTGVYFTGALSTGGYFTGALSTGV 158



 Score = 33.5 bits (75), Expect = 9.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 164 LSTGVYFTGALCTGVCFTGALSTGVYFTGALSTGV 198



 Score = 33.5 bits (75), Expect = 9.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 194 LSTGVYFTGALCTGVYFTGALSTGVYFTGALSTGV 228



 Score = 33.5 bits (75), Expect = 9.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 204 LCTGVYFTGALSTGVYFTGALSTGVYFTGALSTGV 238



 Score = 33.5 bits (75), Expect = 9.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 214 LSTGVYFTGALSTGVYFTGALSTGVYFTGALSTGV 248



 Score = 33.5 bits (75), Expect = 9.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 264 LSTGVYFTGALCTGVYFTGALSTGVYFTGALSTGV 298



 Score = 33.5 bits (75), Expect = 9.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 274 LCTGVYFTGALSTGVYFTGALSTGVYFTGALSTGV 308



 Score = 33.5 bits (75), Expect = 9.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 284 LSTGVYFTGALSTGVYFTGALSTGVYFTGALSTGV 318



 Score = 33.5 bits (75), Expect = 9.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 464 LCTGVYFTGALCTGVYFTGALSTGVYFTGALSTGV 498



 Score = 33.5 bits (75), Expect = 9.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 474 LCTGVYFTGALSTGVYFTGALSTGVCFTGALSTGV 508



 Score = 33.5 bits (75), Expect = 9.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 120
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 484 LSTGVYFTGALSTGVCFTGALSTGVYFTGALSTGV 518


>tr|Q941W7|Q941W7_ORYSJ Putative uncharacterized protein B1088C09.12
           OS=Oryza sativa subsp. japonica GN=B1088C09.12 PE=4 SV=1
          Length = 229

 Score = 34.7 bits (78), Expect = 4.3
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = -2

Query: 181 ACTQGPSPWVPCTLVAWSRGSIRRRSSLPARCLQAATAAA 62
           +C + P P+ P  ++ +  G+ RRR  LPA  L A TAAA
Sbjct: 121 SCAERPPPYPPPLVLCYLLGAARRRRVLPALHLSAMTAAA 160


>tr|A7SCE9|A7SCE9_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g113077 PE=4 SV=1
          Length = 172

 Score = 33.9 bits (76), Expect = 7.3
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 223 CTQGISPWAPCIRAACTQGPSPWVPCTLVAWSRGSIRRRSSLPARCLQAA 74
           CT+G S    C R +CT+G      CT  + +RGS  R S     C + +
Sbjct: 82  CTRGSSTRGSCTRGSCTRGSCNRGSCTRGSCTRGSCTRGSCTRGSCTRGS 131


>tr|Q47K88|Q47K88_THEFY Putative membrane protein OS=Thermobifida
           fusca (strain YX) GN=Tfu_3101 PE=4 SV=1
          Length = 433

 Score = 33.5 bits (75), Expect = 9.5
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = -2

Query: 160 PWVPCTLVAWSRGSIRRRSSLPARCLQAATAAAMRVELAWAGKPYFSAAALL 5
           PW    +  W+R  +   S+L    L AATA    V L W G P+  AA LL
Sbjct: 70  PWAGVFIDRWARRQVLLYSALVKAGLAAATAVL--VALGWDGAPFLLAALLL 119


>tr|A2GJ62|A2GJ62_TRIVA Salivary glue protein Sgs-3-related protein
           OS=Trichomonas vaginalis G3 GN=TVAG_006700 PE=4 SV=1
          Length = 131

 Score = 33.5 bits (75), Expect = 9.5
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -1

Query: 224 LYTGDFSLGALYTGGLYSGAFSLGALYSG 138
           +YTG  S G +YTG +Y+G  S G +Y+G
Sbjct: 73  VYTGRTSTGRVYTGRVYTGRTSTGRVYTG 101