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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946126
Clone id YMU02A01NGRL0011_I19
Library
Length 252
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_I19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGATGACAGTTTCATTTTTGTGATAGAGTCCACGGGAGCTCTAAAAGCAGCCGACATGTT
TTTGAATGCCATAGATATTTTGAAGACAAAGCTTGATGCTGTACGTTTGTCCATGGAAAC
CGAAGAGAATGATGATCTATTTGGAGAGCTAGGGGCACATATGAGGGGAGGTCTTTAATG
TCTGACTGGCTTGCCTGGGGAATGTCTTTTCCTCCCTAATGGATATAAATTGAATGGGTT
CTACCAAGAAAA
■■Homology search results ■■ -
sp_hit_id Q39211
Definition sp|Q39211|RPB3A_ARATH DNA-directed RNA polymerase II subunit RPB3-A OS=Arabidopsis thaliana
Align length 57
Score (bit) 88.2
E-value 1.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946126|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_I19, 5'
         (252 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q39211|RPB3A_ARATH DNA-directed RNA polymerase II subunit RPB...    88   1e-17
sp|Q39212|RPB3B_ARATH DNA-directed RNA polymerase II subunit RPB...    83   4e-16
sp|Q54DH7|RPB3_DICDI DNA-directed RNA polymerase II subunit rpb3...    39   0.008
sp|O94616|RPAC1_SCHPO DNA-directed RNA polymerases I and III sub...    37   0.040
sp|Q54SN4|RPAC1_DICDI DNA-directed RNA polymerases I and III sub...    35   0.088
sp|Q8TVB8|RPOD_METKA DNA-directed RNA polymerase subunit D OS=Me...    33   0.34 
sp|P16925|CNJC_TETTH Conjugation stage-specific protein OS=Tetra...    32   0.75 
sp|O28002|RPOD_ARCFU DNA-directed RNA polymerase subunit D OS=Ar...    31   1.7  
sp|Q8PV16|RPOD_METMA DNA-directed RNA polymerase subunit D OS=Me...    31   2.2  
sp|Q2NFZ6|RPOD_METST DNA-directed RNA polymerase subunit D OS=Me...    30   2.8  
sp|O26144|RPOD_METTH DNA-directed RNA polymerase subunit D OS=Me...    30   3.7  
sp|Q9HQJ4|RPOD_HALSA DNA-directed RNA polymerase subunit D OS=Ha...    30   4.9  
sp|P07703|RPAC1_YEAST DNA-directed RNA polymerases I and III sub...    30   4.9  
sp|Q18253|DPF2_CAEEL Dipeptidyl peptidase family member 2 OS=Cae...    30   4.9  
sp|Q9XPN6|MATK_HELBU Maturase K OS=Helonias bullata GN=matK PE=3...    29   8.3  

>sp|Q39211|RPB3A_ARATH DNA-directed RNA polymerase II subunit RPB3-A
           OS=Arabidopsis thaliana GN=RPB36A PE=2 SV=1
          Length = 319

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 43/57 (75%), Positives = 49/57 (85%)
 Frame = +2

Query: 2   DDSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSMETEENDDLFGELGAHMRGG 172
           DDSFIF +ESTGA+KA+ + LNAID+LK KLDAVRLS +T E DD FGELGAHMRGG
Sbjct: 263 DDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSDDTVEADDQFGELGAHMRGG 319


>sp|Q39212|RPB3B_ARATH DNA-directed RNA polymerase II subunit RPB3-B
           OS=Arabidopsis thaliana GN=RPB36B PE=1 SV=2
          Length = 319

 Score = 83.2 bits (204), Expect = 4e-16
 Identities = 41/56 (73%), Positives = 46/56 (82%)
 Frame = +2

Query: 5   DSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSMETEENDDLFGELGAHMRGG 172
           DSF+F +ESTGALKA+ + LNAIDILK KLDA+RLS  T E DD FGELGAHMR G
Sbjct: 264 DSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLSDNTVEADDQFGELGAHMREG 319


>sp|Q54DH7|RPB3_DICDI DNA-directed RNA polymerase II subunit rpb3
           OS=Dictyostelium discoideum GN=polr2c PE=3 SV=1
          Length = 302

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 19/37 (51%), Positives = 25/37 (67%)
 Frame = +2

Query: 5   DSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSM 115
           D FIF +ES+GALK  D+ L AI I+K KL  ++  M
Sbjct: 261 DKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQGQM 297


>sp|O94616|RPAC1_SCHPO DNA-directed RNA polymerases I and III
           subunit RPAC1 OS=Schizosaccharomyces pombe GN=rpc40 PE=2
           SV=1
          Length = 348

 Score = 36.6 bits (83), Expect = 0.040
 Identities = 16/43 (37%), Positives = 29/43 (67%)
 Frame = +2

Query: 5   DSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSMETEEND 133
           D ++F +ESTG +K   +F+ +I +LK+K  AV+ S++   +D
Sbjct: 306 DHYLFSVESTGIMKPDVLFIKSIAVLKSKCLAVKSSLQNISSD 348


>sp|Q54SN4|RPAC1_DICDI DNA-directed RNA polymerases I and III
           subunit rpac1 OS=Dictyostelium discoideum GN=polr1c PE=3
           SV=1
          Length = 345

 Score = 35.4 bits (80), Expect = 0.088
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +2

Query: 5   DSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSM 115
           D FIF IESTGALK+ ++F  AI I   K + V  S+
Sbjct: 304 DHFIFSIESTGALKSREIFQEAIKIFIEKCNIVEESI 340


>sp|Q8TVB8|RPOD_METKA DNA-directed RNA polymerase subunit D
           OS=Methanopyrus kandleri GN=rpoD PE=3 SV=1
          Length = 275

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 12/41 (29%), Positives = 28/41 (68%)
 Frame = +2

Query: 2   DDSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSMETE 124
           DD+F+F +E+ G++      L A+D ++ KL++++ +++ E
Sbjct: 231 DDAFVFNVETDGSMSLDTAILKALDAIEHKLESLKKNLQKE 271


>sp|P16925|CNJC_TETTH Conjugation stage-specific protein
           OS=Tetrahymena thermophila GN=CNJC PE=2 SV=1
          Length = 310

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 5   DSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSMETEEND 133
           D F F +E+TG +K  ++       L+ KLD +R  ++   N+
Sbjct: 261 DKFFFKVETTGVMKPVEVLRRGFSTLRQKLDFMREQIQENSNN 303


>sp|O28002|RPOD_ARCFU DNA-directed RNA polymerase subunit D
           OS=Archaeoglobus fulgidus GN=rpoD PE=3 SV=1
          Length = 264

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = +2

Query: 5   DSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSME 118
           ++F+F +E TGAL   ++   A++IL++K + +   +E
Sbjct: 224 NNFLFTVEGTGALPVREVMKKALEILRSKAEEMNKIIE 261


>sp|Q8PV16|RPOD_METMA DNA-directed RNA polymerase subunit D
           OS=Methanosarcina mazei GN=rpoD PE=3 SV=1
          Length = 266

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = +2

Query: 2   DDSFIFVIESTGALKAADMFLNAIDILKTKLD 97
           +++F+F +ES G+  A D+ +NA +++K K +
Sbjct: 226 ENAFVFTMESDGSYTAKDLTINAANVIKGKAE 257


>sp|Q2NFZ6|RPOD_METST DNA-directed RNA polymerase subunit D
           OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpoD
           PE=3 SV=1
          Length = 270

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 2   DDSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSMETEE 127
           +  +IF IE+ G+LK  D+   A DIL  K D +   +  EE
Sbjct: 229 ESKYIFKIETDGSLKPFDVLTIACDILSEKADNIINFVNEEE 270
tr_hit_id A9SHD1
Definition tr|A9SHD1|A9SHD1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 57
Score (bit) 94.7
E-value 2.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946126|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_I19, 5'
         (252 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SHD1|A9SHD1_PHYPA Predicted protein OS=Physcomitrella paten...    95   2e-18
tr|Q8LAJ1|Q8LAJ1_ARATH DNA-directed RNA polymerase II, third lar...    88   2e-16
tr|A7P9N6|A7P9N6_VITVI Chromosome chr3 scaffold_8, whole genome ...    88   2e-16
tr|A5B429|A5B429_VITVI Putative uncharacterized protein OS=Vitis...    88   2e-16
tr|Q2MGQ5|Q2MGQ5_MEDTR RNA polymerase, dimerisation OS=Medicago ...    85   2e-15
tr|Q0WRA4|Q0WRA4_ARATH DNA-directed RNA polymerase II, third lar...    83   6e-15
tr|Q6YX88|Q6YX88_ORYSJ Os09g0110400 protein OS=Oryza sativa subs...    62   2e-08
tr|B8BCX6|B8BCX6_ORYSI Putative uncharacterized protein OS=Oryza...    62   2e-08
tr|B6TCC3|B6TCC3_MAIZE DNA-directed RNA polymerase II 36 kDa pol...    60   7e-08
tr|A3BW07|A3BW07_ORYSJ Putative uncharacterized protein OS=Oryza...    50   4e-05
tr|A9SM40|A9SM40_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.007
tr|Q01F02|Q01F02_OSTTA Rpb3 DNA-directed RNA polymerase II subun...    41   0.026
tr|A4RSP9|A4RSP9_OSTLU DNA-directed RNA polymerase II subunit 3 ...    40   0.045
tr|B6JXY4|B6JXY4_SCHJP DNA-directed RNA polymerases I and III su...    39   0.17 
tr|Q6FXP6|Q6FXP6_CANGA Strain CBS138 chromosome B complete seque...    38   0.29 
tr|Q7RN53|Q7RN53_PLAYO DNA-directed RNA polymerases i and iii 40...    37   0.38 
tr|A8WQE9|A8WQE9_CAEBR Putative uncharacterized protein OS=Caeno...    37   0.38 
tr|Q4XYM6|Q4XYM6_PLACH Putative uncharacterized protein (Fragmen...    37   0.50 
tr|B3L5N8|B3L5N8_PLAKH DNA-diDNA-directed RNA polymerase I, puta...    37   0.65 
tr|A8PAX3|A8PAX3_BRUMA DNA-directed RNA polymerase II 33 kDa pol...    37   0.65 
tr|A5K591|A5K591_PLAVI DNA-directed RNA polymerase I, putative O...    37   0.65 
tr|A5DTC9|A5DTC9_LODEL DNA-directed RNA polymerases I and III 40...    37   0.65 
tr|Q4DWU1|Q4DWU1_TRYCR DNA-directed RNA polymerase II subunit 3,...    36   0.85 
tr|Q8IHT3|Q8IHT3_PLAF7 DNA-directed RNA polymerase I, putative O...    36   1.1  
tr|Q59ZF5|Q59ZF5_CANAL Putative uncharacterized protein RPC40 OS...    36   1.1  
tr|A5DPW5|A5DPW5_PICGU Putative uncharacterized protein OS=Pichi...    36   1.1  
tr|O08521|O08521_CRIGR Homologous to 40kD subunit of RNA-polymer...    35   1.4  
tr|Q9VMX3|Q9VMX3_DROME CG3756 OS=Drosophila melanogaster GN=CG37...    35   1.4  
tr|Q4YX04|Q4YX04_PLABE DNA-directed RNA polymerase I, putative O...    35   1.4  
tr|B4Q356|B4Q356_DROSI GD23312 OS=Drosophila simulans GN=GD23312...    35   1.4  

>tr|A9SHD1|A9SHD1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_129844 PE=4 SV=1
          Length = 324

 Score = 94.7 bits (234), Expect = 2e-18
 Identities = 45/57 (78%), Positives = 52/57 (91%)
 Frame = +2

Query: 2   DDSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSMETEENDDLFGELGAHMRGG 172
           +DSFIF +ESTGA+KA+ MFLNAI+ILK+KLDAVRLS +TEE DD FGELGAHMRGG
Sbjct: 266 EDSFIFTVESTGAIKASQMFLNAIEILKSKLDAVRLSFDTEEADDQFGELGAHMRGG 322


>tr|Q8LAJ1|Q8LAJ1_ARATH DNA-directed RNA polymerase II, third
           largest subunit OS=Arabidopsis thaliana PE=2 SV=1
          Length = 319

 Score = 88.2 bits (217), Expect = 2e-16
 Identities = 43/57 (75%), Positives = 49/57 (85%)
 Frame = +2

Query: 2   DDSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSMETEENDDLFGELGAHMRGG 172
           DDSFIF +ESTGA+KA+ + LNAID+LK KLDAVRLS +T E DD FGELGAHMRGG
Sbjct: 263 DDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSDDTVEADDQFGELGAHMRGG 319


>tr|A7P9N6|A7P9N6_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036639001
           PE=4 SV=1
          Length = 318

 Score = 87.8 bits (216), Expect = 2e-16
 Identities = 42/57 (73%), Positives = 49/57 (85%)
 Frame = +2

Query: 2   DDSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSMETEENDDLFGELGAHMRGG 172
           +DSFIF +ESTGA+KA+ + LNAID+LK KLDAVRLS +T E DD FGELGAHMRGG
Sbjct: 262 EDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG 318


>tr|A5B429|A5B429_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019338 PE=4 SV=1
          Length = 318

 Score = 87.8 bits (216), Expect = 2e-16
 Identities = 42/57 (73%), Positives = 49/57 (85%)
 Frame = +2

Query: 2   DDSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSMETEENDDLFGELGAHMRGG 172
           +DSFIF +ESTGA+KA+ + LNAID+LK KLDAVRLS +T E DD FGELGAHMRGG
Sbjct: 262 EDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG 318


>tr|Q2MGQ5|Q2MGQ5_MEDTR RNA polymerase, dimerisation OS=Medicago
           truncatula GN=MtrDRAFT_AC147481g15v2 PE=4 SV=1
          Length = 318

 Score = 84.7 bits (208), Expect = 2e-15
 Identities = 41/56 (73%), Positives = 48/56 (85%)
 Frame = +2

Query: 5   DSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSMETEENDDLFGELGAHMRGG 172
           DSFIF +ESTGA+KA+ + LN+I+ILK KLDAVRLS +T E DD FGELGAHMRGG
Sbjct: 263 DSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 318


>tr|Q0WRA4|Q0WRA4_ARATH DNA-directed RNA polymerase II, third
           largest subunit OS=Arabidopsis thaliana GN=At2g15400
           PE=2 SV=1
          Length = 319

 Score = 83.2 bits (204), Expect = 6e-15
 Identities = 41/56 (73%), Positives = 46/56 (82%)
 Frame = +2

Query: 5   DSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSMETEENDDLFGELGAHMRGG 172
           DSF+F +ESTGALKA+ + LNAIDILK KLDA+RLS  T E DD FGELGAHMR G
Sbjct: 264 DSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLSDNTVEADDQFGELGAHMREG 319


>tr|Q6YX88|Q6YX88_ORYSJ Os09g0110400 protein OS=Oryza sativa subsp.
           japonica GN=P0646B04.12 PE=2 SV=1
          Length = 330

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 30/57 (52%), Positives = 43/57 (75%)
 Frame = +2

Query: 2   DDSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSMETEENDDLFGELGAHMRGG 172
           +DSFIF +E+TGA+ A ++ +NAI +L+ KLDAVRL    +++D   GELGAH+ GG
Sbjct: 278 EDSFIFTVETTGAITAYELIMNAITVLRQKLDAVRL----QDDDADLGELGAHLVGG 330


>tr|B8BCX6|B8BCX6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_30378 PE=4 SV=1
          Length = 330

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 30/57 (52%), Positives = 43/57 (75%)
 Frame = +2

Query: 2   DDSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSMETEENDDLFGELGAHMRGG 172
           +DSFIF +E+TGA+ A ++ +NAI +L+ KLDAVRL    +++D   GELGAH+ GG
Sbjct: 278 EDSFIFTVETTGAITAYELIMNAITVLRQKLDAVRL----QDDDADLGELGAHLVGG 330


>tr|B6TCC3|B6TCC3_MAIZE DNA-directed RNA polymerase II 36 kDa
           polypeptide A OS=Zea mays PE=2 SV=1
          Length = 328

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 28/56 (50%), Positives = 42/56 (75%)
 Frame = +2

Query: 2   DDSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSMETEENDDLFGELGAHMRG 169
           +DSF+F +E+TGA+ A ++ +NAI +L+ KLDAVRL    +++D   GELGAH+ G
Sbjct: 276 EDSFVFTVETTGAITAYELIMNAITVLRQKLDAVRL----QDDDGDLGELGAHLGG 327


>tr|A3BW07|A3BW07_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_027229 PE=4 SV=1
          Length = 147

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 25/50 (50%), Positives = 37/50 (74%)
 Frame = +2

Query: 2   DDSFIFVIESTGALKAADMFLNAIDILKTKLDAVRLSMETEENDDLFGEL 151
           +DSFIF +E+TGA+ A ++ +NAI +L+ KLDAVRL    +++D   GEL
Sbjct: 44  EDSFIFTVETTGAITAYELIMNAITVLRQKLDAVRL----QDDDADLGEL 89