DK946100
Clone id YMU02A01NGRL0011_H06
Library
Length 574
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_H06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
AGAGCTCCAGATTAGCAGAGCAAAGGGAGAGTGATTGTACGCAGTATTCAGTATGGCCAT
CTCCATAGCCGCTTCCTCGGCAGTTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCTTGTC
AAAGAGCTTCTCTGGTCCCAAGGCCACTACCCTGTTCGCCCCCAAGAGCCCCAACCCGCT
CGCCATCTCTAATGGCAGCCGTGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAA
GAAGTTCGAGACTCTGTCCTACTTGCCGCCTTTGTCAAGTGAGCAGATTGCGAAGCAGGT
GGACTTCATGGTCCGAAAAGGCTGGACCCCTTGCATTGAGTTCGACAAAATCGGGAGCGT
GTACCGAGAGCACTTCCACGGCAGCGGCTACTACGATGGGCGGTACTGGGTGATGTGGAA
GCTGCCCATGTTTGGCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCGC
CAAGGAGTATCCTGAAGCCTTCATCCGCGTGCTGGGCTTTGACGCTAAGAGGCAGGTGCA
GGTCTCCGGCTTCCTTGTCCAGAAGCCCTCTGTC
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 156
Score (bit) 183.0
E-value 5.0e-46
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946100|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_H06, 5'
(574 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 183 5e-46
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai... 181 2e-45
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 181 2e-45
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha... 179 7e-45
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha... 179 7e-45
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 178 2e-44
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha... 178 2e-44
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai... 177 3e-44
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai... 177 3e-44
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha... 177 3e-44
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 177 3e-44
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai... 177 4e-44
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 177 4e-44
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha... 177 4e-44
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai... 176 6e-44
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha... 176 6e-44
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 176 7e-44
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 176 7e-44
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai... 175 1e-43
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai... 175 2e-43
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 175 2e-43
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha... 175 2e-43
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 175 2e-43
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha... 174 2e-43
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai... 174 3e-43
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha... 174 4e-43
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai... 173 6e-43
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai... 173 6e-43
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai... 173 6e-43
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha... 173 6e-43

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
Length = 181

Score = 183 bits (465), Expect = 5e-46
Identities = 87/156 (55%), Positives = 109/156 (69%), Gaps = 5/156 (3%)
Frame = +2

Query: 116 LSKSFSGPKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 283
L+ F+G K+ F K+ N + SNG RV M VW P KK+ETLSYLPPLS E
Sbjct: 22 LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 284 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 460
++K++D+++R W PC+EF+ + G VYREH H GYYDGRYW MWKLPMFGC D+A V+
Sbjct: 82 ALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 461 REIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 568
+E+ EC KEYP AFIRV+GFD RQVQ F+V KP
Sbjct: 142 KEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
SV=1
Length = 178

Score = 181 bits (459), Expect = 2e-45
Identities = 83/141 (58%), Positives = 101/141 (71%)
Frame = +2

Query: 146 TTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGW 325
T FA S P SNG RV M VW P KKFETLSYLPPL+ EQ+ ++VD+++R GW
Sbjct: 38 TRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGW 94

Query: 326 TPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFI 505
PCIEF K+G VYRE+ + GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K YP+ F
Sbjct: 95 IPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFN 154

Query: 506 RVLGFDAKRQVQVSGFLVQKP 568
R++GFD RQVQ FL KP
Sbjct: 155 RIIGFDNTRQVQCISFLTYKP 175


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
Length = 182

Score = 181 bits (459), Expect = 2e-45
Identities = 88/152 (57%), Positives = 109/152 (71%), Gaps = 5/152 (3%)
Frame = +2

Query: 128 FSGPKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
F+ K+T+ F K+ N + SNG RV M VW P KKFETLSYLPPLSSEQ+AK
Sbjct: 28 FTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87

Query: 296 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
+VD+++RK PC+EF+ + G VYREH GYYDGRYW MWKLPMFGC D++ VL+E+
Sbjct: 88 EVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELE 147

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 568
EC K YP AFIR++GFD KRQVQ+ F+ KP
Sbjct: 148 ECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
Length = 177

Score = 179 bits (455), Expect = 7e-45
Identities = 86/152 (56%), Positives = 106/152 (69%), Gaps = 4/152 (2%)
Frame = +2

Query: 128 FSGPKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
F+G +++ F K+ N L+ SNG RVS M VW P KKFETLSYLPPLS E +AK
Sbjct: 26 FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 296 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
+VD+++R W PCIEF K G VYRE+ GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86 EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 476 CAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
K YPE F+R++GFD KRQVQ F+ KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
Length = 177

Score = 179 bits (455), Expect = 7e-45
Identities = 86/152 (56%), Positives = 106/152 (69%), Gaps = 4/152 (2%)
Frame = +2

Query: 128 FSGPKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
F+G +++ F K+ N L+ SNG RVS M VW P KKFETLSYLPPLS E +AK
Sbjct: 26 FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 296 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
+VD+++R W PCIEF K G VYRE+ GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86 EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 476 CAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
K YPE F+R++GFD KRQVQ F+ KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
Length = 171

Score = 178 bits (451), Expect = 2e-44
Identities = 85/156 (54%), Positives = 107/156 (68%), Gaps = 8/156 (5%)
Frame = +2

Query: 125 SFSGPKATTLFAP--KSPNPLA------ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 280
+F+G K+T F K N A SNG RV M VW P+ N KFETLSYLP L+
Sbjct: 15 AFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTE 74

Query: 281 EQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 460
EQ+ K+V++++R W PC+EFD GS+ R++ GYYDGRYWVMWKLPMFGC +A+ V+
Sbjct: 75 EQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVI 134

Query: 461 REIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 568
E+ ECAK YP+AFIRV+GFD RQVQ F+V KP
Sbjct: 135 NEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small chain
SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1
Length = 177

Score = 178 bits (451), Expect = 2e-44
Identities = 80/128 (62%), Positives = 94/128 (73%)
Frame = +2

Query: 188 SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 367
SNG RVS M VW P KKFETLSYLPPLS E +AK+VD+++R W PCIEF K G VYR
Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYR 109

Query: 368 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVS 547
E+ GYYDGRYW MWKLPMFGC DA+ V+ E+ E K YPE F+R++GFD KRQVQ
Sbjct: 110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCI 169

Query: 548 GFLVQKPS 571
F+ KP+
Sbjct: 170 SFIAYKPT 177


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
Length = 178

Score = 177 bits (449), Expect = 3e-44
Identities = 85/157 (54%), Positives = 111/157 (70%), Gaps = 4/157 (2%)
Frame = +2

Query: 116 LSKSFSGPKATTLF-APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQ 286
L+ F+G K++ F K N + SNGSRV+ M VW P KKFETLSYLPPL+ EQ
Sbjct: 21 LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 287 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 463
+ K+V++++RKGW PC+EF+ + G V+R++ GYYDGRYW MW+LP+FG DAA VL+
Sbjct: 81 LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 464 EIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPSV 574
E+AEC EYPEAFIR++GFD RQVQ F+ P V
Sbjct: 141 EVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTPKV 177


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
Length = 180

Score = 177 bits (449), Expect = 3e-44
Identities = 81/130 (62%), Positives = 101/130 (77%), Gaps = 1/130 (0%)
Frame = +2

Query: 188 SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 367
+NGSRVS M VW+PY+N KFETLSYLPPLS + +AKQ+D++++ GW PCIEFD G+V R
Sbjct: 51 TNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTR 110

Query: 368 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEY-PEAFIRVLGFDAKRQVQV 544
E GYYDGRYW MWKLPMFGC D+A+VLREI EC K Y + +IR LGFD RQVQ
Sbjct: 111 EGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQC 170

Query: 545 SGFLVQKPSV 574
+ F+V +P++
Sbjct: 171 ASFIVHQPTL 180


>sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small chain
SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2
Length = 173

Score = 177 bits (449), Expect = 3e-44
Identities = 85/153 (55%), Positives = 107/153 (69%), Gaps = 4/153 (2%)
Frame = +2

Query: 125 SFSGPKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIA 292
+F+G +++ F K+ N L+ S+G RVS M VW P KKFETLSYLPPLS E +A
Sbjct: 21 AFNGCRSSVAFPATRKANNDLSTLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLA 80

Query: 293 KQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
K+VD+++R W PCIEF K G VYRE+ GYYDGRYW MWKLPMFGC DA+ V+ E+
Sbjct: 81 KEVDYLLRNDWVPCIEFSKEGFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVE 140

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
E K YPE F+R++GFD KRQVQ F+ KP+
Sbjct: 141 EAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 173


tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 152
Score (bit) 286.0
E-value 6.0e-76
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946100|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_H06, 5'
(574 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c... 286 6e-76
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c... 201 2e-50
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c... 198 2e-49
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c... 197 3e-49
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c... 197 3e-49
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c... 197 3e-49
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c... 194 2e-48
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c... 188 2e-46
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c... 187 3e-46
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c... 187 3e-46
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c... 186 1e-45
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c... 185 2e-45
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c... 184 2e-45
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c... 184 4e-45
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c... 184 4e-45
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c... 182 9e-45
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c... 182 9e-45
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c... 182 9e-45
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c... 182 1e-44
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c... 182 1e-44
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c... 181 2e-44
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c... 181 3e-44
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c... 180 6e-44
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c... 180 6e-44
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c... 179 7e-44
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c... 179 7e-44
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c... 179 1e-43
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c... 179 1e-43
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c... 178 2e-43
tr|Q67IU5|Q67IU5_ORYSJ Ribulose bisphosphate carboxylase small c... 177 3e-43

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
Length = 174

Score = 286 bits (732), Expect = 6e-76
Identities = 133/152 (87%), Positives = 144/152 (94%)
Frame = +2

Query: 116 LSKSFSGPKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
LSKSFSG KA TLFAPK NPLAISNGSR+SAMLVWKPYDNKKFETLSYLPPL+++QIAK
Sbjct: 22 LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 296 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
QV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREIAE
Sbjct: 82 QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 476 CAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
CAKEYP AFIRVLGFDAKRQVQV+GFLV+KPS
Sbjct: 142 CAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87740 PE=3 SV=1
Length = 179

Score = 201 bits (511), Expect = 2e-50
Identities = 94/153 (61%), Positives = 115/153 (75%), Gaps = 3/153 (1%)
Frame = +2

Query: 122 KSFSGPKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K FSG K+TTLFA K+ ++ NGSRV M VW P KFET SYLPPL+ +QIAKQV
Sbjct: 27 KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
DFM+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D+A VLREI
Sbjct: 87 DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
EC + +P ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87752 PE=3 SV=1
Length = 179

Score = 198 bits (503), Expect = 2e-49
Identities = 93/153 (60%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Frame = +2

Query: 122 KSFSGPKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K FSG K+TTL A K+ ++ NGSRV M VW P KFET SYLPPL+ +QIAKQV
Sbjct: 27 KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
DFM+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D+A VLREI
Sbjct: 87 DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
EC + +P ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
Length = 214

Score = 197 bits (501), Expect = 3e-49
Identities = 90/153 (58%), Positives = 115/153 (75%), Gaps = 3/153 (1%)
Frame = +2

Query: 122 KSFSGPKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K+FSG K+ TLF+ K+ ++ NGSRV M VW P KFET SYLPPL+ +QIAKQV
Sbjct: 62 KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
D+M+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D++ VLREI
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
EC ++P ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
PE=2 SV=1
Length = 184

Score = 197 bits (501), Expect = 3e-49
Identities = 91/153 (59%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Frame = +2

Query: 122 KSFSGPKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K+FSG K+ TLF KS ++ NGSRV M VW P KFET SYLPPLS +QIA+QV
Sbjct: 32 KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
D+M+++ PCIEFD +G+V R +F G SGYYDGRYW MWKLPMFGC D++ VLREI
Sbjct: 92 DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
EC YP ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_221004 PE=3 SV=1
Length = 184

Score = 197 bits (501), Expect = 3e-49
Identities = 91/153 (59%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Frame = +2

Query: 122 KSFSGPKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K+FSG K TLF+ K+ A+ NGSRV M VW P KFET SYLPPL+ +QIAKQV
Sbjct: 32 KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
D+M+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D++ VLREI
Sbjct: 92 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
EC ++P ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_225236 PE=3 SV=1
Length = 183

Score = 194 bits (494), Expect = 2e-48
Identities = 88/153 (57%), Positives = 115/153 (75%), Gaps = 3/153 (1%)
Frame = +2

Query: 122 KSFSGPKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K+FSG K+ TLF+ ++ ++ NGSRV M VW P KFET SYLPPL+ ++IAKQV
Sbjct: 31 KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
D+M+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D++ VLREI
Sbjct: 91 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
EC ++P ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_115069 PE=3 SV=1
Length = 181

Score = 188 bits (477), Expect = 2e-46
Identities = 86/150 (57%), Positives = 108/150 (72%)
Frame = +2

Query: 122 KSFSGPKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K+FSG K+ T+F+ K+ N ++ NGSRV M VW P KFET SYLPPLS + IAKQV
Sbjct: 32 KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 481
++M+++ PC+EFD V R + GYYDGRYW MWKLPMFGCQD+A VLREI EC
Sbjct: 92 EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 482 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_146969 PE=3 SV=1
Length = 181

Score = 187 bits (476), Expect = 3e-46
Identities = 87/150 (58%), Positives = 108/150 (72%)
Frame = +2

Query: 122 KSFSGPKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K+FSG K++TLF+ K+ + ++ NGSRV M VW P KFET SYLPPLS + IAKQV
Sbjct: 32 KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 481
D+M+++ PC+EFD V R + GYYDGRYW MWKLPMFGCQD A VLREI EC
Sbjct: 92 DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 482 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_123666 PE=3 SV=1
Length = 181

Score = 187 bits (476), Expect = 3e-46
Identities = 87/150 (58%), Positives = 109/150 (72%)
Frame = +2

Query: 122 KSFSGPKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K+FSG K+ TLF+ +S ++ NGSRV+ M VW P KFET SYLPPLS + IAKQV
Sbjct: 32 KAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 481
++M+++ PC+EFD V RE+ GYYDGRYW MWKLPMFGCQD+A VLREI EC
Sbjct: 92 EYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 482 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181