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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945918
Clone id YMU02A01NGRL0010_O08
Library
Length 440
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_O08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GACCCATCGGACGACGTCAGACAGGAAACTCACGTTGGTGTCAATGCTGATGTATCAATT
GCATCTGCAACAAATGCAGAGTCTGATGGTAATGGAAAAGGTGAAGGGGACCATCCTGAA
GAGGAAGCTGATGTTGTGGAACATAGCAATGATGCAATGACAGAGAATGCTTAAGGAAGC
TACCTAGAATTCTCAAATAGCTGGCTAGCTTGTACAGCCAAAATCAAAGATGGGAGTTAT
CATAGTCTGAACATGTGAAAACACAGACTTTAGTTATCCACTTGCTGGATTTCTTCTTGT
AATGTTAATTTACTGTATGAGGAGGTTGTATGTCTTTAGATTTTTGTATCATCAATAGGT
CCGTAGCCTCTGAACATTTTGTGTAAATAAAACGCATATGGAGTTTGCCCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P85125
Definition sp|P85125|PTRF_RAT Polymerase I and transcript release factor OS=Rattus norvegicus
Align length 52
Score (bit) 32.7
E-value 0.59
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945918|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_O08, 5'
         (410 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P85125|PTRF_RAT Polymerase I and transcript release factor OS...    33   0.59 
sp|P39442|HCY_NATPH Halocyanin OS=Natronomonas pharaonis GN=hcy ...    32   1.00 
sp|Q6CI62|ASF1_YARLI Histone chaperone ASF1 OS=Yarrowia lipolyti...    32   1.00 
sp|P97399|DSPP_MOUSE Dentin sialophosphoprotein OS=Mus musculus ...    32   1.3  
sp|Q6NZI2|PTRF_HUMAN Polymerase I and transcript release factor ...    31   1.7  
sp|Q4IFH8|HIR3_GIBZE Histone transcription regulator 3 homolog O...    30   2.9  
sp|O54724|PTRF_MOUSE Polymerase I and transcript release factor ...    30   3.8  
sp|Q8WUQ7|CS029_HUMAN Uncharacterized protein C19orf29 OS=Homo s...    30   5.0  
sp|P0A5U2|PYRG_MYCTU CTP synthase OS=Mycobacterium tuberculosis ...    29   6.5  
sp|P0A5U3|PYRG_MYCBO CTP synthase OS=Mycobacterium bovis GN=pyrG...    29   6.5  
sp|Q1E2B2|DRS1_COCIM ATP-dependent RNA helicase DRS1 OS=Coccidio...    29   6.5  
sp|Q2H3D0|RT106_CHAGB Histone chaperone RTT106 OS=Chaetomium glo...    29   8.5  
sp|Q92766|RREB1_HUMAN RAS-responsive element-binding protein 1 O...    29   8.5  
sp|Q3T8J9|GON4L_HUMAN GON-4-like protein OS=Homo sapiens GN=GON4...    29   8.5  

>sp|P85125|PTRF_RAT Polymerase I and transcript release factor
           OS=Rattus norvegicus GN=Ptrf PE=1 SV=1
          Length = 392

 Score = 32.7 bits (73), Expect = 0.59
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +1

Query: 10  DDVRQETHVGVNADVSIASATNAESDGNGKGEGDHPEEEADVVEHSNDAMTE 165
           D+V+    + V+  +  + A   E +G+  GEG+ PEE+A  +E S+D   E
Sbjct: 160 DEVKLPAKLSVSKSLKESEAL-PEKEGDELGEGERPEEDAAAIELSSDEAVE 210


>sp|P39442|HCY_NATPH Halocyanin OS=Natronomonas pharaonis GN=hcy
           PE=1 SV=1
          Length = 163

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
 Frame = +1

Query: 10  DDVRQETHVGVNADVSIASAT------NAESDGNGKGEGDHPEEEADVVEHSNDAM 159
           D  R+   +G  A V+ A+        N   +GNG GE D PE  AD     NDA+
Sbjct: 3   DISRRRFVLGTGATVAAATLAGCNGNGNGNGNGNGNGEPDTPEGRADQFLTDNDAL 58


>sp|Q6CI62|ASF1_YARLI Histone chaperone ASF1 OS=Yarrowia lipolytica
           GN=ASF1 PE=3 SV=1
          Length = 265

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 10  DDVRQETHVGVNADVSIASATNAESDGNGKGEGDHPEEEADVVEHSNDAM 159
           ++V  ET      D+       AE DG+G G+G    E+ D+ E S++ M
Sbjct: 190 EEVEGETEADAKEDIEAEGEAEAEGDGDGDGDG----EDEDLEEASDEEM 235


>sp|P97399|DSPP_MOUSE Dentin sialophosphoprotein OS=Mus musculus
           GN=Dspp PE=1 SV=2
          Length = 934

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +1

Query: 10  DDVRQETHVGVNADVSIASATNAESDGNGKGEGD-HPEEEADVVEHSNDAMTEN 168
           DD   ++H G + D S  S+ + +SD NG G+ +   ++E+D  +H N + +E+
Sbjct: 492 DDNDSDSHAGED-DSSDDSSGDGDSDSNGDGDSESEDKDESDSSDHDNSSDSES 544


>sp|Q6NZI2|PTRF_HUMAN Polymerase I and transcript release factor
           OS=Homo sapiens GN=PTRF PE=1 SV=1
          Length = 390

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 10  DDVRQETHVGVNADVSIASATNAESDGNGKGEGDHPEEEADVVEHSNDAMTE 165
           D+V+    + ++  +  + A   E +G   GEG+ PEE+A  +E S+D   E
Sbjct: 158 DEVKLPAKLSISKSLKESEAL-PEKEGEELGEGERPEEDAAALELSSDEAVE 208


>sp|Q4IFH8|HIR3_GIBZE Histone transcription regulator 3 homolog
            OS=Gibberella zeae GN=HIR3 PE=3 SV=1
          Length = 2020

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 4    PSDDVRQETHVGVNADVSIASATNAESDGNGKGEGDHPEEEADVVEHSNDAMTENA 171
            P   +R+E   G + DV +  A +   + +G+ E D   E+    EH   A  ENA
Sbjct: 1844 PDSQIRREA--GHDGDVDMKDAGDENEEDHGEEEHDEENEDEQDEEHDEAAEDENA 1897


>sp|O54724|PTRF_MOUSE Polymerase I and transcript release factor
           OS=Mus musculus GN=Ptrf PE=1 SV=1
          Length = 392

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 10  DDVRQETHVGVNADVSIASATNAESDGNGKGEGDHPEEEADVVEHSNDAMTE 165
           D+V+    + V+  +  + A   E +G+  GEG+ PE++   +E S+D   E
Sbjct: 160 DEVKLPAKLSVSKSLKESEAL-PEKEGDELGEGERPEDDTAAIELSSDEAVE 210


>sp|Q8WUQ7|CS029_HUMAN Uncharacterized protein C19orf29 OS=Homo
           sapiens GN=C19orf29 PE=1 SV=2
          Length = 690

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +1

Query: 37  GVNADVSIASATNAESDGNGKGEGDHPEE----EADVVEHSND 153
           G  A+  +  AT  E DG+G GEG+   E    E D+++ S D
Sbjct: 442 GGPAEAEVDGATPTEGDGDGDGEGEGEGEAVLMEEDLIQQSLD 484


>sp|P0A5U2|PYRG_MYCTU CTP synthase OS=Mycobacterium tuberculosis
           GN=pyrG PE=3 SV=1
          Length = 586

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 175 GSYLEFSNSWLACTAKIKDGSYHSLNM*KHRL*LSTCWISS 297
           G Y+E S+++L+    ++ G +      KHR  +  CW++S
Sbjct: 308 GKYVELSDAYLSVAEALRAGGF------KHRAKVEICWVAS 342


>sp|P0A5U3|PYRG_MYCBO CTP synthase OS=Mycobacterium bovis GN=pyrG
           PE=3 SV=1
          Length = 586

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 175 GSYLEFSNSWLACTAKIKDGSYHSLNM*KHRL*LSTCWISS 297
           G Y+E S+++L+    ++ G +      KHR  +  CW++S
Sbjct: 308 GKYVELSDAYLSVAEALRAGGF------KHRAKVEICWVAS 342
tr_hit_id Q4P5F6
Definition tr|Q4P5F6|Q4P5F6_USTMA Putative uncharacterized protein OS=Ustilago maydis
Align length 64
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945918|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_O08, 5'
         (410 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4P5F6|Q4P5F6_USTMA Putative uncharacterized protein OS=Ustil...    35   1.4  
tr|Q11YA8|Q11YA8_CYTH3 Sensor protein OS=Cytophaga hutchinsonii ...    35   1.9  
tr|A6FZH7|A6FZH7_9DELT Putative uncharacterized protein OS=Plesi...    34   3.2  
tr|A7TTW9|A7TTW9_VANPO Putative uncharacterized protein (Fragmen...    33   5.5  
tr|A5DQQ7|A5DQQ7_PICGU Predicted protein OS=Pichia guilliermondi...    33   7.1  
tr|A8JDK3|A8JDK3_CHLRE Predicted protein OS=Chlamydomonas reinha...    33   9.3  

>tr|Q4P5F6|Q4P5F6_USTMA Putative uncharacterized protein OS=Ustilago
            maydis GN=UM04657.1 PE=3 SV=1
          Length = 1943

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +1

Query: 46   ADVSIASATNA-ESDGNGKGEGDHPEEEADVVEHSNDAMTENA*GSYLE-FSNSWLACTA 219
            AD SIASA+ A   +GNG G GD   E+AD    +    T N        + N +L+C+A
Sbjct: 1600 ADTSIASASAAVNGNGNGNGNGDGVNEDADYRTRTMPIWTTNLEKMQKRLYYNGYLSCSA 1659

Query: 220  KIKD 231
             + D
Sbjct: 1660 FMDD 1663


>tr|Q11YA8|Q11YA8_CYTH3 Sensor protein OS=Cytophaga hutchinsonii
           (strain ATCC 33406 / NCIMB 9469) GN=atoS PE=3 SV=1
          Length = 737

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
 Frame = +1

Query: 43  NADVSIASATNAESDGNGKGEGDHPEEEADVVEHSNDAMTENA*GSYLEFSNSWLACTAK 222
           ++ V +   T+AE +G    E  HPE++++++EH  + M       Y E +N ++    K
Sbjct: 394 SSTVKVIGYTSAEMEGRYVFEEIHPEDKSNLLEHLKEVML------YPE-TNVYVEIRKK 446

Query: 223 IKDGSY-----HSLNM 255
            KDG Y     HS NM
Sbjct: 447 HKDGGYRWLECHSCNM 462


>tr|A6FZH7|A6FZH7_9DELT Putative uncharacterized protein
           OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_25816 PE=4 SV=1
          Length = 504

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 1   DPSDDVRQ-ETHVGVNADVSIASATNAESDGNGKGEGDHPEEEADVVEHSNDAMTE 165
           +PS + R+     GV A+V  A A  A  +GNG+ EG+  EEE +  E   D   E
Sbjct: 429 EPSTETRRIPPEAGVVAEV--AEAEEAGEEGNGEEEGEEEEEEGEEEEEEGDGAEE 482


>tr|A7TTW9|A7TTW9_VANPO Putative uncharacterized protein (Fragment)
           OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
           70294) GN=Kpol_76p2 PE=4 SV=1
          Length = 235

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 58  IASATNAESDGNGKGEGDHPEEEADVVEHSNDAMTENA*GS 180
           +ASA  A S  +G    D PEEE DVV+++ D   +N  G+
Sbjct: 114 VASAQEAASKYDGHSNFDEPEEELDVVDYNIDFYNDNDEGN 154


>tr|A5DQQ7|A5DQQ7_PICGU Predicted protein OS=Pichia guilliermondii
            GN=PGUG_05608 PE=4 SV=2
          Length = 1306

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +1

Query: 1    DPSDDVRQETHVGVNADVSIASATNAESDGNGKGEGDHPEEEADVVEHSNDAMTE 165
            +  D+V+ E H  V A+V   +    E++   K EGD  + EADV     DA  E
Sbjct: 1091 EAEDEVKAEVHAEVQAEVQ--AEVEVEAEAEVKAEGDEVKVEADVKVEEVDAEEE 1143


>tr|A8JDK3|A8JDK3_CHLRE Predicted protein OS=Chlamydomonas reinhardtii
            GN=CHLREDRAFT_153169 PE=4 SV=1
          Length = 2614

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 12/29 (41%), Positives = 23/29 (79%)
 Frame = +1

Query: 25   ETHVGVNADVSIASATNAESDGNGKGEGD 111
            E HVG + D++++S+++++SDG+G   GD
Sbjct: 1337 EHHVGEDKDMNVSSSSSSDSDGSGSEAGD 1365