DK945608
Clone id YMU02A01NGRL0009_O03
Library
Length 306
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_O03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
AAATGAACCAGACTTTGTGATGGTAGTGGGTCTGGTAGTTTTTTGTGTGTTTTGATGCTT
CGGATGATATTATCTAGAGTGTTGCAGACATGGGTTTTGGATAGACGGTGGCGCGGTTTC
GCTGTGCTTCCTCCTCTTACCGGCCTTTTCTATTTACATGAACTTTGCCTAAGTAACTGA
TAATGTAGACAACTATGTTGTTTTGTTTTCTCCTGAATATTATGTTGAGGCTTTTCCTTT
GCTCTTGGATCCCATAGTAGTCTATGTCAACAGCCAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
■■Homology search results ■■ -
sp_hit_id Q66I12
Definition sp|Q66I12|CCD47_DANRE Coiled-coil domain-containing protein 47 OS=Danio rerio
Align length 32
Score (bit) 29.3
E-value 6.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945608|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O03, 5'
(275 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q66I12|CCD47_DANRE Coiled-coil domain-containing protein 47 O... 29 6.4
sp|Q8VBX0|ASB13_MOUSE Ankyrin repeat and SOCS box protein 13 OS=... 29 8.4
sp|Q8WXK3|ASB13_HUMAN Ankyrin repeat and SOCS box protein 13 OS=... 29 8.4

>sp|Q66I12|CCD47_DANRE Coiled-coil domain-containing protein 47
OS=Danio rerio GN=ccdc47 PE=2 SV=1
Length = 486

Score = 29.3 bits (64), Expect = 6.4
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = -2

Query: 199 NIVVYIISYLGKVHVNRKGR*EEEAQRNRATV 104
N+V+Y I + K+ +NR+G+ ++A RNRA V
Sbjct: 387 NMVIYSIDKVKKLRLNREGK--QKADRNRARV 416


>sp|Q8VBX0|ASB13_MOUSE Ankyrin repeat and SOCS box protein 13 OS=Mus
musculus GN=Asb13 PE=2 SV=1
Length = 278

Score = 28.9 bits (63), Expect = 8.4
Identities = 21/56 (37%), Positives = 25/56 (44%)
Frame = +1

Query: 7 TRLCDGSGSGSFLCVLMLRMILSRVLQTWVLDRRWRGFAVLPPLTGLFYLHELCLS 174
T LCD SGS CV +++LS G V PPL LHE C+S
Sbjct: 87 TPLCDACASGSIECV---KLLLS------------YGAKVNPPLYTASPLHEACMS 127


>sp|Q8WXK3|ASB13_HUMAN Ankyrin repeat and SOCS box protein 13
OS=Homo sapiens GN=ASB13 PE=1 SV=2
Length = 278

Score = 28.9 bits (63), Expect = 8.4
Identities = 21/56 (37%), Positives = 25/56 (44%)
Frame = +1

Query: 7 TRLCDGSGSGSFLCVLMLRMILSRVLQTWVLDRRWRGFAVLPPLTGLFYLHELCLS 174
T LCD SGS CV +++LS G V PPL LHE C+S
Sbjct: 87 TPLCDACASGSIECV---KLLLS------------YGAKVNPPLYTASPLHEACMS 127


tr_hit_id B1PID4
Definition tr|B1PID4|B1PID4_9CONI Putative elongation factor 1A (Fragment) OS=Cupressus sempervirens
Align length 39
Score (bit) 33.5
E-value 5.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945608|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O03, 5'
(275 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B1PID4|B1PID4_9CONI Putative elongation factor 1A (Fragment) ... 33 5.5

>tr|B1PID4|B1PID4_9CONI Putative elongation factor 1A (Fragment)
OS=Cupressus sempervirens PE=2 SV=1
Length = 138

Score = 33.5 bits (75), Expect = 5.5
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 7/39 (17%)
Frame = +1

Query: 28 GSGSFLCV-------LMLRMILSRVLQTWVLDRRWRGFA 123
G S+LC+ L++R ++R +QTWVLDRRW A
Sbjct: 92 GHLSWLCLSRPIAQDLLVRCSVARRMQTWVLDRRWHHIA 130