DK945607
Clone id YMU02A01NGRL0009_O02
Library
Length 241
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_O02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GCTTGTGCTTCGGCTCAGAGGGGGGAATTGATGGAATGTGTGGTAGAGCCTGTGACTCTG
GATGTGCTGTTCTTTTTTTTGGGCACCTGCTATTGTGAATTCTGGTGATCCTTAGTGTTT
GGTTGTCTTGGGAAGCGATGAAAATTGAAGCTGGATGTTTTGTACGGGAAATGTTTGATT
AGTCAATAAAAAGGGCTTTGTGTTGCAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
■■Homology search results ■■ -
sp_hit_id Q9UTE3
Definition sp|Q9UTE3|SEB1_SCHPO Rpb7-binding protein seb1 OS=Schizosaccharomyces pombe
Align length 42
Score (bit) 31.2
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945607|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O02, 5'
(211 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9UTE3|SEB1_SCHPO Rpb7-binding protein seb1 OS=Schizosaccharo... 31 1.7
sp|Q803D2|LIS1B_DANRE Lissencephaly-1 homolog B OS=Danio rerio G... 30 4.9
sp|P34549|YNJ5_CAEEL Uncharacterized protein R10E11.5 OS=Caenorh... 29 6.4
sp|Q7T394|LIS1A_DANRE Lissencephaly-1 homolog A OS=Danio rerio G... 29 6.4
sp|Q05037|KCNA4_BOVIN Potassium voltage-gated channel subfamily ... 29 6.4

>sp|Q9UTE3|SEB1_SCHPO Rpb7-binding protein seb1
OS=Schizosaccharomyces pombe GN=seb1 PE=1 SV=3
Length = 620

Score = 31.2 bits (69), Expect = 1.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1

Query: 136 ASQDNQTLRITRIHNSRCPKKRTAHPESQALPHIPSIPPSEP 11
A +Q+LR+ +H SR P R+ P P SIP + P
Sbjct: 332 APTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLP 373


>sp|Q803D2|LIS1B_DANRE Lissencephaly-1 homolog B OS=Danio rerio
GN=pafah1b1b PE=2 SV=3
Length = 410

Score = 29.6 bits (65), Expect = 4.9
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1

Query: 157 HPASIFIAS-QDNQTLRITRIHNSRCPKKRTAH 62
HP F+ S D++TLRI N RC K +AH
Sbjct: 347 HPGGRFVVSCADDKTLRIWDYKNKRCMKTLSAH 379


>sp|P34549|YNJ5_CAEEL Uncharacterized protein R10E11.5
OS=Caenorhabditis elegans GN=R10E11.5 PE=2 SV=3
Length = 444

Score = 29.3 bits (64), Expect = 6.4
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1

Query: 103 RIHNSRCPKKRTAHPESQALP---HIPSIPPSEPKHK 2
R+++++ PKK T H + +A P + P +P ++P K
Sbjct: 98 RVYDAKIPKKNTTHSDFKAAPIRFNAPPVPITKPAKK 134


>sp|Q7T394|LIS1A_DANRE Lissencephaly-1 homolog A OS=Danio rerio
GN=pafah1b1a PE=2 SV=3
Length = 410

Score = 29.3 bits (64), Expect = 6.4
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1

Query: 157 HPASIFIAS-QDNQTLRITRIHNSRCPKKRTAH 62
HP +I S D++TLRI N RC K +AH
Sbjct: 347 HPGGKYIVSCADDKTLRIWDYKNKRCTKTLSAH 379


>sp|Q05037|KCNA4_BOVIN Potassium voltage-gated channel subfamily A
member 4 OS=Bos taurus GN=KCNA4 PE=2 SV=1
Length = 660

Score = 29.3 bits (64), Expect = 6.4
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -1

Query: 157 HPASIFIASQDNQTLRITRIHNSRCPKKRTAHPESQALPHIPSIPPSEPKHK 2
HP+ S D Q+ R +R P+K+ H + PH + PS + K
Sbjct: 65 HPSRGACTSHDPQSGRGSRRRRRPHPEKKKVHHRQSSFPHCSDLMPSGSEEK 116


tr_hit_id A8NL00
Definition tr|A8NL00|A8NL00_COPC7 Predicted protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003)
Align length 52
Score (bit) 35.0
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945607|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O02, 5'
(211 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8NL00|A8NL00_COPC7 Predicted protein OS=Coprinopsis cinerea ... 35 1.9
tr|A5AR66|A5AR66_VITVI Putative uncharacterized protein OS=Vitis... 33 5.6
tr|Q24748|Q24748_DROVI Mobile elemnt gypsy, complete OS=Drosophi... 33 7.0
tr|A1D1F7|A1D1F7_NEOFI FAD binding domain protein OS=Neosartorya... 33 7.3

>tr|A8NL00|A8NL00_COPC7 Predicted protein OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_12460 PE=4
SV=1
Length = 889

Score = 35.0 bits (79), Expect = 1.9
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -1

Query: 163 TKHPASIFIASQDNQTLRITRIHNSRCPKKRTAHPESQALPHIPSIPPSEPK 8
T P + A +D+ ++ IT+ P HP S A+P+IPS P P+
Sbjct: 11 TSRPTTPAPADRDSDSVSITKQKVDTTPATLAQHPSSSAVPNIPSPVPETPR 62


>tr|A5AR66|A5AR66_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_010669 PE=4 SV=1
Length = 480

Score = 33.5 bits (75), Expect = 5.6
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2

Query: 177 QTFPVQNIQLQFSSLPKTTKH*GSPEFTIAGAQKKEQHIQSHRLYHT 37
Q P N+ Q P + H G F +A A + H+Q H LYH+
Sbjct: 274 QYAPYYNMPAQTPHAPYMSSHTGHASFNVAVAAAQSSHMQFHGLYHS 320


>tr|Q24748|Q24748_DROVI Mobile elemnt gypsy, complete OS=Drosophila
virilis GN=gag PE=4 SV=1
Length = 451

Score = 33.1 bits (74), Expect = 7.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3

Query: 137 RFPRQPNTKDHQNSQ*QVPKKKNSTSRVTGSTTHSINS 24
RF ++P T Q ++ PK+KNS+ R TG +N+
Sbjct: 357 RFRQKPTTVSRQANESNAPKRKNSSDRSTGQRRQRVNN 394


>tr|A1D1F7|A1D1F7_NEOFI FAD binding domain protein OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181)
GN=NFIA_009290 PE=4 SV=1
Length = 405

Score = 33.1 bits (74), Expect = 7.3
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = -2

Query: 108 SPEFTIAGAQKKEQHIQSHRLYHTFHQFPPLSRST 4
S EF + GAQ+ + +++ +++H +Q P LSR+T
Sbjct: 286 SDEFILMGAQRYGKPVENPKVFHDINQIPTLSRNT 320