DK945549
Clone id YMU02A01NGRL0009_K22
Library
Length 323
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_K22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GATGAGCGAAGGCGATTTCATCTTTTCTGAGAACCCTGATTTTGTGATTGTGTAATTACA
ACTGTGGAACAGAAGGATGAGAAGTCTACTGACACAACAAGATATCTCTGGAGAGGAGAA
AATTGAGAAGGTTTGAGTTCTCAACAATGGGCTATGAGGCAATAATGGGAAGGCACCGAT
TGTGGGCTTGTATAGGTTTTGACCCACCTGTGCAACCGTCAGCGCCTTTGTGCACTGGTG
CAATGTCCTGTGGTTACCTTGTTTGGAATCTTAATTGTTCTCATGTATGTGCCANAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q54SY5
Definition sp|Q54SY5|Y5150_DICDI Putative uncharacterized protein DDB_G0282129 OS=Dictyostelium discoideum
Align length 62
Score (bit) 31.2
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945549|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_K22, 5'
(295 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q54SY5|Y5150_DICDI Putative uncharacterized protein DDB_G0282... 31 1.7
sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS... 31 2.2
sp|A6UUY8|RNZ_META3 Ribonuclease Z OS=Methanococcus aeolicus (st... 30 3.8
sp|Q9QSP0|L_ABLVB Large structural protein OS=Australian bat lys... 30 3.8
sp|Q5SUQ9|CQ068_MOUSE Uncharacterized protein C17orf68 homolog O... 29 6.3
sp|Q6BW57|NOP14_DEBHA Probable nucleolar complex protein 14 OS=D... 29 8.5

>sp|Q54SY5|Y5150_DICDI Putative uncharacterized protein DDB_G0282129
OS=Dictyostelium discoideum GN=DDB_G0282129 PE=4 SV=1
Length = 765

Score = 31.2 bits (69), Expect = 1.7
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -3

Query: 203 VKTYTSPQSVPSHYCLIAHC*ELKPSQ-FSPLQRYLVVSVDFSSFCSTVVITQSQNQGSQ 27
+ +Y SPQS P + PS SP+Q +V SSF S I Q Q Q Q
Sbjct: 322 IDSYDSPQSSPPRQSSLLISTSSPPSPPLSPIQPTNIVQSSSSSFSSPTYIQQQQQQQQQ 381

Query: 26 KR 21
++
Sbjct: 382 QQ 383


>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment)
OS=Gallus gallus GN=BLM PE=2 SV=1
Length = 1142

Score = 30.8 bits (68), Expect = 2.2
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +3

Query: 108 LERRKLRR---FEFSTMGYEAIMGRHRLWACIGFDPPVQPSAPLCTG 239
L++R+LRR + + ++ G AC+ DP +P PLC+G
Sbjct: 108 LQQRELRRKLLADSGALNTNSVNGPRNWKACVQQDPSSRPGTPLCSG 154


>sp|A6UUY8|RNZ_META3 Ribonuclease Z OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=rnz PE=3 SV=1
Length = 322

Score = 30.0 bits (66), Expect = 3.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2

Query: 141 RTQTFSIFSSPEISCCVSRLLILLFHSCNYTITKSGFSEK 22
RT+ +I+ PEI + +L + +HS N+ IT + K
Sbjct: 81 RTEPINIYGPPEIKNTIENILKIGYHSINFKITVHEINSK 120


>sp|Q9QSP0|L_ABLVB Large structural protein OS=Australian bat
lyssavirus (isolate Bat/AUS/1996) GN=L PE=3 SV=2
Length = 2128

Score = 30.0 bits (66), Expect = 3.8
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Frame = -2

Query: 231 TKALTVAQVGQNLYKPTIG--------AFPLLPHSPLLRTQTFSIFSS--PEISCCVSRL 82
T ALTVAQ Q+L KP G F L SP+L+ + + I S+ + +SR+
Sbjct: 833 TNALTVAQHSQSLIKPMRGFLLMAVQAVFHYLLFSPILKGRVYKILSAEGDDFLLAMSRI 892

Query: 81 LIL 73
+ L
Sbjct: 893 VYL 895


>sp|Q5SUQ9|CQ068_MOUSE Uncharacterized protein C17orf68 homolog
OS=Mus musculus PE=2 SV=2
Length = 1212

Score = 29.3 bits (64), Expect = 6.3
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +3

Query: 132 FEFSTMGYEAIMGRHRLWACIGFDPPVQPSAPLCTGAMSC---GYLVWNLNCSHVC 290
+ F TM A G+HR WA FDP P + SC +L W+ C C
Sbjct: 545 YSFPTMLALAEEGQHRAWAT--FDPKAMLPLPEASHLTSCQLNRHLAWSWVCLPSC 598


>sp|Q6BW57|NOP14_DEBHA Probable nucleolar complex protein 14
OS=Debaryomyces hansenii GN=NOP14 PE=3 SV=1
Length = 795

Score = 28.9 bits (63), Expect = 8.5
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2

Query: 228 KALTVAQVGQNLYKPTIGAFPLLPHSPLLRTQTFSIFSSPEISCCVSRLLILL 70
K TV+++GQ L+ I LL QTFS +PEI C + + +LL
Sbjct: 526 KKTTVSRIGQGLFIVDI----------LLNYQTFSKRFTPEIVCFLEKAALLL 568


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945549|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_K22, 5'
(295 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******