DK945431
Clone id YMU02A01NGRL0009_E17
Library
Length 419
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_E17. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
AGGAGAGTAATTGTACACCGTATTCAGAATGGCCATCTCCATAACCGCTTCCTCGGCTGT
TGTCGCTCCTATCTGCGCCCCCTCACAGAGCTTGTCACACAGCTTCTCTGGTCTCAAGGC
CACTACCCTGTTCTCCCCCGAGAGCCCCAACCCGCTCGCCATCTATCATGGCACCCGTGT
GAGCGCCATGCTTGTGTGGAAGCCGTATGACGACAAGAAGTTCGAGACTCCATCCTACTT
GCCGCCTTTGTCAAGTGAACATATTGCCAATCACGTGGACTTCATGGTCCGAAAAGGCTG
GACCCCTTGCATTGAGTTCGACAAAATCTTGAGCGTGTACCGAGAGCACTTCCACGGTGT
CGGCTACGACCATGGGCGGTACTGGCTGATGTGATAAGCTGCCCATGTTTGGCTGCCAA
■■Homology search results ■■ -
sp_hit_id O48550
Definition sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica
Align length 98
Score (bit) 96.3
E-value 4.0e-20
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945431|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_E17, 5'
(419 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai... 96 4e-20
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai... 93 5e-19
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha... 93 5e-19
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai... 92 8e-19
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha... 92 8e-19
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai... 91 2e-18
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 91 2e-18
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha... 91 2e-18
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai... 90 3e-18
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai... 90 4e-18
sp|P26573|RBS8_NICPL Ribulose bisphosphate carboxylase small cha... 90 4e-18
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha... 90 4e-18
sp|Q41373|RBS_SACHY Ribulose bisphosphate carboxylase small chai... 89 5e-18
sp|P29684|RBS_HEVBR Ribulose bisphosphate carboxylase small chai... 89 5e-18
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha... 89 5e-18
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai... 89 7e-18
sp|P07689|RBS3_PEA Ribulose bisphosphate carboxylase small chain... 89 7e-18
sp|P00869|RBS2_PEA Ribulose bisphosphate carboxylase small chain... 89 7e-18
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha... 89 7e-18
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha... 89 7e-18
sp|Q08186|RBS6_MESCR Ribulose bisphosphate carboxylase small cha... 89 9e-18
sp|P16032|RBS1_MESCR Ribulose bisphosphate carboxylase small cha... 88 1e-17
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai... 88 2e-17
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai... 88 2e-17
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha... 88 2e-17
sp|Q08183|RBS3_MESCR Ribulose bisphosphate carboxylase small cha... 87 2e-17
sp|Q04450|RBS2_MESCR Ribulose bisphosphate carboxylase small cha... 87 2e-17
sp|O22077|RBS_FAGCR Ribulose bisphosphate carboxylase small chai... 87 3e-17
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 87 3e-17
sp|Q41351|RBS_STELP Ribulose bisphosphate carboxylase small chai... 86 4e-17

>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
SV=1
Length = 178

Score = 96.3 bits (238), Expect = 4e-20
Identities = 47/98 (47%), Positives = 58/98 (59%)
Frame = +2

Query: 98 HSFSGLKATTLFSPESPNPLAIYHGTRVSAMLVWKPYDDKKFETPSYLPPLSSEHIANHV 277
HS + T F+ S P +G RV M VW P KKFET SYLPPL+ E + V
Sbjct: 30 HSSAAFPVTRKFADSSKLPS---NGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEV 86

Query: 278 DFMVRKGWTPCIEFDKILSVYREHFHGVGYDHGRYWLM 391
D+++R GW PCIEF K+ VYRE+ + GY GRYW M
Sbjct: 87 DYLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTM 124


>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1
Length = 187

Score = 92.8 bits (229), Expect = 5e-19
Identities = 48/110 (43%), Positives = 63/110 (57%), Gaps = 5/110 (4%)
Frame = +2

Query: 77 APSQSLSHSFSGLKATTLFSPESPNPLAIY----HGTRVSAMLVWKPYDDKKFETPSYLP 244
A S+ SF+GLK+ F L I +G RV MLVW P + KK+ET SYLP
Sbjct: 17 AAQASMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLP 76

Query: 245 PLSSEHIANHVDFMVRKGWTPCIEFDKILS-VYREHFHGVGYDHGRYWLM 391
LS E + ++++++KGW PC+EF+ VYREH GY GRYW M
Sbjct: 77 DLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTM 126


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
Length = 177

Score = 92.8 bits (229), Expect = 5e-19
Identities = 52/109 (47%), Positives = 68/109 (62%), Gaps = 5/109 (4%)
Frame = +2

Query: 80 PSQS-LSHSFSGLKATTLF--SPESPNPLAIY--HGTRVSAMLVWKPYDDKKFETPSYLP 244
P+QS + F+GL+++ F + ++ N L+ +G RVS M VW P KKFET SYLP
Sbjct: 17 PAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLP 76

Query: 245 PLSSEHIANHVDFMVRKGWTPCIEFDKILSVYREHFHGVGYDHGRYWLM 391
PLS E +A VD+++R W PCIEF K VYRE+ GY GRYW M
Sbjct: 77 PLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTM 125


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
Length = 183

Score = 92.0 bits (227), Expect = 8e-19
Identities = 52/110 (47%), Positives = 72/110 (65%), Gaps = 5/110 (4%)
Frame = +2

Query: 77 APSQS-LSHSFSGLKATTLF--SPESPNPLAIY-HGTRVSAMLVWKPYDDKKFETPSYLP 244
AP+Q+ + F+GLK+++ F + +S + +I +G RV M VW P KKFET SYLP
Sbjct: 20 APAQARMVAPFNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLP 79

Query: 245 PLSSEHIANHVDFMVRKGWTPCIEFD-KILSVYREHFHGVGYDHGRYWLM 391
PLSSE +A VD+++RK W PC+EF+ + VYRE+ GY GRYW M
Sbjct: 80 PLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTM 129


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
Length = 177

Score = 92.0 bits (227), Expect = 8e-19
Identities = 49/100 (49%), Positives = 63/100 (63%), Gaps = 4/100 (4%)
Frame = +2

Query: 104 FSGLKATTLF--SPESPNPLAIY--HGTRVSAMLVWKPYDDKKFETPSYLPPLSSEHIAN 271
F+GL+++ F + ++ N L+ +G RVS M VW P KKFET SYLPPLS E +A
Sbjct: 26 FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 272 HVDFMVRKGWTPCIEFDKILSVYREHFHGVGYDHGRYWLM 391
VD+++R W PCIEF K VYRE+ GY GRYW M
Sbjct: 86 EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTM 125


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
Length = 180

Score = 90.9 bits (224), Expect = 2e-18
Identities = 44/95 (46%), Positives = 58/95 (61%)
Frame = +2

Query: 107 SGLKATTLFSPESPNPLAIYHGTRVSAMLVWKPYDDKKFETPSYLPPLSSEHIANHVDFM 286
+GLKA +G+RVS M VW+PY++ KFET SYLPPLS + +A +D++
Sbjct: 32 AGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYV 91

Query: 287 VRKGWTPCIEFDKILSVYREHFHGVGYDHGRYWLM 391
++ GW PCIEFD +V RE GY GRYW M
Sbjct: 92 IKSGWAPCIEFDVQGTVTREGSTMPGYYDGRYWTM 126


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
Length = 181

Score = 90.5 bits (223), Expect = 2e-18
Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 5/106 (4%)
Frame = +2

Query: 89 SLSHSFSGLKATTLF--SPESPNPLAIY--HGTRVSAMLVWKPYDDKKFETPSYLPPLSS 256
SL+ F+GLK+ F + ++ N + +G RV M VW P KK+ET SYLPPLS
Sbjct: 21 SLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSD 80

Query: 257 EHIANHVDFMVRKGWTPCIEFD-KILSVYREHFHGVGYDHGRYWLM 391
E ++ +D+++R W PC+EF+ + VYREH H GY GRYW M
Sbjct: 81 EALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTM 126


>sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small chain
SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1
Length = 177

Score = 90.5 bits (223), Expect = 2e-18
Identities = 50/108 (46%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Frame = +2

Query: 80 PSQSLSHSFSGLKATTLF--SPESPNPLAIY--HGTRVSAMLVWKPYDDKKFETPSYLPP 247
P+QS F+ +++ F + ++ N L+ +G RVS M VW P KKFET SYLPP
Sbjct: 18 PAQSSMVPFNACRSSVPFPATRKANNNLSTLPGNGGRVSCMQVWPPEGLKKFETLSYLPP 77

Query: 248 LSSEHIANHVDFMVRKGWTPCIEFDKILSVYREHFHGVGYDHGRYWLM 391
LS E +A VD+++R W PCIEF K VYRE+ GY GRYW M
Sbjct: 78 LSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTM 125


>sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1
Length = 170

Score = 90.1 bits (222), Expect = 3e-18
Identities = 47/108 (43%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Frame = +2

Query: 77 APSQSLSHSFSGLKATTLF--SPESPNPLA-IYHGTRVSAMLVWKPYDDKKFETPSYLPP 247
A S + F GLK+T + S L + +G R+ M VW Y +KKFET SYLPP
Sbjct: 8 ASSATAVAPFQGLKSTASLPVARRSSRSLGNVSNGGRIRCMQVWPAYGNKKFETLSYLPP 67

Query: 248 LSSEHIANHVDFMVRKGWTPCIEFDKILSVYREHFHGVGYDHGRYWLM 391
LS++ + VD+++R GW PC+EF K+ VYRE+ Y GRYW M
Sbjct: 68 LSTDDLLKQVDYLLRNGWIPCLEFSKVGFVYRENSTSPCYYDGRYWTM 115


>sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Medicago sativa PE=2 SV=1
Length = 180

Score = 89.7 bits (221), Expect = 4e-18
Identities = 46/101 (45%), Positives = 64/101 (63%), Gaps = 5/101 (4%)
Frame = +2

Query: 104 FSGLKATTLF--SPESPNPLAIY--HGTRVSAMLVWKPYDDKKFETPSYLPPLSSEHIAN 271
F+GLK++ F + ++ N + +G RV+ M VW P KKFET SYLPPL+ E +A
Sbjct: 26 FTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAK 85

Query: 272 HVDFMVRKGWTPCIEFDKILS-VYREHFHGVGYDHGRYWLM 391
V++++RKGW PC+EF+ VYRE+ GY GRYW M
Sbjct: 86 EVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTM 126


tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 109
Score (bit) 166.0
E-value 4.0e-40
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945431|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_E17, 5'
(419 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c... 166 4e-40
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c... 104 2e-21
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c... 103 3e-21
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c... 101 2e-20
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c... 100 3e-20
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c... 100 5e-20
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c... 100 6e-20
tr|A9U380|A9U380_PHYPA Ribulose bisphosphate carboxylase small c... 100 6e-20
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c... 97 8e-20
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c... 95 4e-19
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c... 95 5e-19
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c... 92 4e-18
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c... 92 4e-18
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c... 92 4e-18
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c... 94 4e-18
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c... 93 5e-18
tr|Q9FRZ3|Q9FRZ3_WHEAT Ribulose bisphosphate carboxylase small c... 93 5e-18
tr|Q6RWD8|Q6RWD8_CAPAN Ribulose bisphosphate carboxylase small c... 93 7e-18
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c... 91 7e-18
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c... 91 9e-18
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c... 92 1e-17
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c... 91 2e-17
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c... 89 2e-17
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c... 89 2e-17
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c... 91 2e-17
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c... 91 2e-17
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c... 89 2e-17
tr|B7FHB2|B7FHB2_MEDTR Putative uncharacterized protein OS=Medic... 91 3e-17
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c... 89 3e-17
tr|Q43115|Q43115_9ROSA Ribulose bisphosphate carboxylase small c... 90 4e-17

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
Length = 174

Score = 166 bits (421), Expect = 4e-40
Identities = 78/109 (71%), Positives = 92/109 (84%), Gaps = 1/109 (0%)
Frame = +2

Query: 68 PICAPS-QSLSHSFSGLKATTLFSPESPNPLAIYHGTRVSAMLVWKPYDDKKFETPSYLP 244
P CA + +SLS SFSGLKA TLF+P+ NPLAI +G+R+SAMLVWKPYD+KKFET SYLP
Sbjct: 13 PSCAAAAESLSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLP 72

Query: 245 PLSSEHIANHVDFMVRKGWTPCIEFDKILSVYREHFHGVGYDHGRYWLM 391
PL+++ IA V++MVRKGWTPCIEFD I SVYREHFHG GY GRYW+M
Sbjct: 73 PLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIM 121


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87740 PE=3 SV=1
Length = 179

Score = 104 bits (260), Expect(2) = 2e-21
Identities = 53/110 (48%), Positives = 71/110 (64%), Gaps = 3/110 (2%)
Frame = +2

Query: 71 ICAPSQSLSHSFSGLKATTLFSPESPNPLAIYHGTRVSAMLVWKPYDDKKFETPSYLPPL 250
+C S S+ FSGLK+TTLF+ ++ ++++G+RV M VW P KFET SYLPPL
Sbjct: 19 VCRESSSVKQ-FSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPL 77

Query: 251 SSEHIANHVDFMVRKGWTPCIEFDKILSVYREHFHG---VGYDHGRYWLM 391
+ + IA VDFM+++ PCIEFD + SV R +F G GY GRYW M
Sbjct: 78 TDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTM 127



Score = 20.8 bits (42), Expect(2) = 2e-21
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3

Query: 396 KLPMFGC 416
KLPMFGC
Sbjct: 129 KLPMFGC 135


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
Length = 214

Score = 103 bits (258), Expect = 3e-21
Identities = 54/109 (49%), Positives = 71/109 (65%), Gaps = 4/109 (3%)
Frame = +2

Query: 77 APSQSLS-HSFSGLKATTLFSPESPNPLAIYHGTRVSAMLVWKPYDDKKFETPSYLPPLS 253
APS+S S +FSGLK+ TLFS ++ ++ +G+RV M VW P KFET SYLPPL+
Sbjct: 54 APSESSSVKAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLT 113

Query: 254 SEHIANHVDFMVRKGWTPCIEFDKILSVYREHFHGV---GYDHGRYWLM 391
+ IA VD+M+++ PCIEFD + SV R +F G GY GRYW M
Sbjct: 114 DDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTM 162


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87752 PE=3 SV=1
Length = 179

Score = 101 bits (252), Expect(2) = 2e-20
Identities = 52/110 (47%), Positives = 70/110 (63%), Gaps = 3/110 (2%)
Frame = +2

Query: 71 ICAPSQSLSHSFSGLKATTLFSPESPNPLAIYHGTRVSAMLVWKPYDDKKFETPSYLPPL 250
+C S S+ FSGLK+TTL + ++ ++++G+RV M VW P KFET SYLPPL
Sbjct: 19 VCRESSSVKQ-FSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPL 77

Query: 251 SSEHIANHVDFMVRKGWTPCIEFDKILSVYREHFHG---VGYDHGRYWLM 391
+ + IA VDFM+++ PCIEFD + SV R +F G GY GRYW M
Sbjct: 78 TDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTM 127



Score = 20.8 bits (42), Expect(2) = 2e-20
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3

Query: 396 KLPMFGC 416
KLPMFGC
Sbjct: 129 KLPMFGC 135


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_225236 PE=3 SV=1
Length = 183

Score = 100 bits (250), Expect = 3e-20
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 3/100 (3%)
Frame = +2

Query: 101 SFSGLKATTLFSPESPNPLAIYHGTRVSAMLVWKPYDDKKFETPSYLPPLSSEHIANHVD 280
+FSGLK+ TLFS ++ ++ +G+RV M VW P KFET SYLPPL+ + IA VD
Sbjct: 32 AFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQVD 91

Query: 281 FMVRKGWTPCIEFDKILSVYREHFHGV---GYDHGRYWLM 391
+M+++ PCIEFD + SV R +F G GY GRYW M
Sbjct: 92 YMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTM 131


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_221004 PE=3 SV=1
Length = 184

Score = 100 bits (248), Expect = 5e-20
Identities = 50/100 (50%), Positives = 64/100 (64%), Gaps = 3/100 (3%)
Frame = +2

Query: 101 SFSGLKATTLFSPESPNPLAIYHGTRVSAMLVWKPYDDKKFETPSYLPPLSSEHIANHVD 280
+FSGLK TLFS ++ A+ +G+RV M VW P KFET SYLPPL+ + IA VD
Sbjct: 33 AFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQVD 92

Query: 281 FMVRKGWTPCIEFDKILSVYREHFHGV---GYDHGRYWLM 391
+M+++ PCIEFD + SV R +F G GY GRYW M
Sbjct: 93 YMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTM 132


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
PE=2 SV=1
Length = 184

Score = 99.8 bits (247), Expect = 6e-20
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 3/100 (3%)
Frame = +2

Query: 101 SFSGLKATTLFSPESPNPLAIYHGTRVSAMLVWKPYDDKKFETPSYLPPLSSEHIANHVD 280
+FSGLK+ TLF+ +S ++ +G+RV M VW P KFET SYLPPLS + IA VD
Sbjct: 33 AFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQVD 92

Query: 281 FMVRKGWTPCIEFDKILSVYREHFHG---VGYDHGRYWLM 391
+M+++ PCIEFD + +V R +F G GY GRYW M
Sbjct: 93 YMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTM 132


>tr|A9U380|A9U380_PHYPA Ribulose bisphosphate carboxylase small
chain (Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_8310 PE=3 SV=1
Length = 156

Score = 99.8 bits (247), Expect = 6e-20
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 3/100 (3%)
Frame = +2

Query: 101 SFSGLKATTLFSPESPNPLAIYHGTRVSAMLVWKPYDDKKFETPSYLPPLSSEHIANHVD 280
+FSGLK+ TLF+ +S ++ +G+RV M VW P KFET SYLPPLS + IA VD
Sbjct: 37 AFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQVD 96

Query: 281 FMVRKGWTPCIEFDKILSVYREHFHG---VGYDHGRYWLM 391
+M+++ PCIEFD + +V R +F G GY GRYW M
Sbjct: 97 YMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTM 136


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_123666 PE=3 SV=1
Length = 181

Score = 97.4 bits (241), Expect(2) = 8e-20
Identities = 47/97 (48%), Positives = 63/97 (64%)
Frame = +2

Query: 101 SFSGLKATTLFSPESPNPLAIYHGTRVSAMLVWKPYDDKKFETPSYLPPLSSEHIANHVD 280
+FSGLK+ TLFS +S ++ +G+RV+ M VW P KFET SYLPPLS + IA V+
Sbjct: 33 AFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVE 92

Query: 281 FMVRKGWTPCIEFDKILSVYREHFHGVGYDHGRYWLM 391
+M+++ PC+EFD V RE+ GY GRYW M
Sbjct: 93 YMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTM 129



Score = 22.7 bits (47), Expect(2) = 8e-20
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3

Query: 396 KLPMFGCQ 419
KLPMFGCQ
Sbjct: 131 KLPMFGCQ 138


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_146969 PE=3 SV=1
Length = 181

Score = 95.1 bits (235), Expect(2) = 4e-19
Identities = 46/97 (47%), Positives = 63/97 (64%)
Frame = +2

Query: 101 SFSGLKATTLFSPESPNPLAIYHGTRVSAMLVWKPYDDKKFETPSYLPPLSSEHIANHVD 280
+FSGLK++TLFS ++ + ++ +G+RV M VW P KFET SYLPPLS + IA VD
Sbjct: 33 AFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVD 92

Query: 281 FMVRKGWTPCIEFDKILSVYREHFHGVGYDHGRYWLM 391
+M+++ PC+EFD V R + GY GRYW M
Sbjct: 93 YMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTM 129



Score = 22.7 bits (47), Expect(2) = 4e-19
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3

Query: 396 KLPMFGCQ 419
KLPMFGCQ
Sbjct: 131 KLPMFGCQ 138