DK945403
Clone id YMU02A01NGRL0009_D05
Library
Length 320
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_D05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGAAGCACGTGAAGACTTGGC
CGCTCTTGAGAAGGATTATGAGGAGGTGGGTGCAGAAGGTCAGGACGATGATGGTGGAGA
AGAGGAGTACTAGGAAGGAGTATTGGGGAACTATTTTATGCTATCCGAATGTTGGGATTG
TTTTGCGTTGACAGTTGGTGATGTGTGCTTGCTTGTGTGGGTGTGAAAGAGCAACAGTTG
ATTGGGGGAGTGGTACTTTAAGAAATAAAGAGGTTTTGTTTTATCTATCAACAGGAATCC
AAACAAAGCTCAACATGTCA
■■Homology search results ■■ -
sp_hit_id Q9ZRB7
Definition sp|Q9ZRB7|TBA_WHEAT Tubulin alpha chain OS=Triticum aestivum
Align length 13
Score (bit) 29.3
E-value 6.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945403|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_D05, 5'
(280 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9ZRB7|TBA_WHEAT Tubulin alpha chain OS=Triticum aestivum GN=... 29 6.4
sp|Q27352|TBA_TRYCR Tubulin alpha chain OS=Trypanosoma cruzi PE=... 29 6.4
sp|P04106|TBA_TRYBR Tubulin alpha chain OS=Trypanosoma brucei rh... 29 6.4
sp|P10873|TBA_TOXGO Tubulin alpha chain OS=Toxoplasma gondii PE=... 29 6.4
sp|P41351|TBA_TETTH Tubulin alpha chain OS=Tetrahymena thermophi... 29 6.4
sp|P10872|TBA_TETPY Tubulin alpha chain OS=Tetrahymena pyriformi... 29 6.4
sp|P33629|TBA_PRUDU Tubulin alpha chain OS=Prunus dulcis GN=TUBA... 29 6.4
sp|P12543|TBA_PLAYO Tubulin alpha chain OS=Plasmodium yoelii yoe... 29 6.4
sp|P14642|TBA_PLAFK Tubulin alpha chain OS=Plasmodium falciparum... 29 6.4
sp|P28287|TBA_OXYGR Tubulin alpha chain OS=Oxytricha granulifera... 29 6.4
sp|P24635|TBA_OCTVU Tubulin alpha chain (Fragment) OS=Octopus vu... 29 6.4
sp|Q06331|TBA_OCTDO Tubulin alpha chain OS=Octopus dofleini PE=2... 29 6.4
sp|Q71G51|TBA_NEOCA Tubulin alpha chain OS=Neospora caninum GN=T... 29 6.4
sp|P02553|TBA_LYTPI Tubulin alpha chain (Fragment) OS=Lytechinus... 29 6.4
sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain OS=Lepidoglyphus destruc... 29 6.4
sp|P50719|TBA_HAECO Tubulin alpha chain OS=Haemonchus contortus ... 29 6.4
sp|Q9C413|TBA_GLOLA Tubulin alpha chain OS=Glomerella lagenarium... 29 6.4
sp|P28268|TBA_EUPVA Tubulin alpha chain OS=Euplotes vannus PE=3 ... 29 6.4
sp|Q08114|TBA_EUPOC Tubulin alpha chain OS=Euplotes octocarinatu... 29 6.4
sp|P33625|TBA_EUGGR Tubulin alpha chain OS=Euglena gracilis GN=T... 29 6.4
sp|Q9FT36|TBA_DAUCA Tubulin alpha chain OS=Daucus carota GN=TBA ... 29 6.4
sp|Q9ZRJ4|TBA_CHLVU Tubulin alpha chain OS=Chlorella vulgaris GN... 29 6.4
sp|P52273|TBA_BOMMO Tubulin alpha chain OS=Bombyx mori PE=2 SV=1 29 6.4
sp|Q08628|TBA_BLEJA Tubulin alpha chain (Fragment) OS=Blepharism... 29 6.4
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific OS=Onc... 29 6.4
sp|P04105|TBAN_PHYPO Tubulin alpha-1B chain OS=Physarum polyceph... 29 6.4
sp|Q3UX10|TBAL3_MOUSE Tubulin alpha chain-like 3 OS=Mus musculus... 29 6.4
sp|P11480|TBAE_PHYPO Tubulin alpha-2B chain OS=Physarum polyceph... 29 6.4
sp|P50258|TBAD_PHYPO Tubulin alpha-1A chain OS=Physarum polyceph... 29 6.4
sp|P49742|TBAB_SCHCO Tubulin alpha-1B chain OS=Schizophyllum com... 29 6.4

>sp|Q9ZRB7|TBA_WHEAT Tubulin alpha chain OS=Triticum aestivum
GN=TUBA PE=2 SV=1
Length = 451

Score = 29.3 bits (64), Expect = 6.4
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1

Query: 1 EAREDLAALEKDY 39
EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|Q27352|TBA_TRYCR Tubulin alpha chain OS=Trypanosoma cruzi PE=3
SV=1
Length = 451

Score = 29.3 bits (64), Expect = 6.4
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1

Query: 1 EAREDLAALEKDY 39
EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|P04106|TBA_TRYBR Tubulin alpha chain OS=Trypanosoma brucei
rhodesiense PE=3 SV=1
Length = 451

Score = 29.3 bits (64), Expect = 6.4
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1

Query: 1 EAREDLAALEKDY 39
EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|P10873|TBA_TOXGO Tubulin alpha chain OS=Toxoplasma gondii PE=3
SV=1
Length = 453

Score = 29.3 bits (64), Expect = 6.4
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1

Query: 1 EAREDLAALEKDY 39
EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|P41351|TBA_TETTH Tubulin alpha chain OS=Tetrahymena thermophila
PE=3 SV=1
Length = 449

Score = 29.3 bits (64), Expect = 6.4
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1

Query: 1 EAREDLAALEKDY 39
EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|P10872|TBA_TETPY Tubulin alpha chain OS=Tetrahymena pyriformis
PE=3 SV=1
Length = 449

Score = 29.3 bits (64), Expect = 6.4
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1

Query: 1 EAREDLAALEKDY 39
EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|P33629|TBA_PRUDU Tubulin alpha chain OS=Prunus dulcis GN=TUBA
PE=2 SV=1
Length = 450

Score = 29.3 bits (64), Expect = 6.4
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1

Query: 1 EAREDLAALEKDY 39
EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|P12543|TBA_PLAYO Tubulin alpha chain OS=Plasmodium yoelii yoelii
GN=PY01155 PE=2 SV=2
Length = 453

Score = 29.3 bits (64), Expect = 6.4
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1

Query: 1 EAREDLAALEKDY 39
EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|P14642|TBA_PLAFK Tubulin alpha chain OS=Plasmodium falciparum
(isolate K1 / Thailand) PE=3 SV=1
Length = 453

Score = 29.3 bits (64), Expect = 6.4
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1

Query: 1 EAREDLAALEKDY 39
EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|P28287|TBA_OXYGR Tubulin alpha chain OS=Oxytricha granulifera
PE=3 SV=1
Length = 450

Score = 29.3 bits (64), Expect = 6.4
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1

Query: 1 EAREDLAALEKDY 39
EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


tr_hit_id A4C0E7
Definition tr|A4C0E7|A4C0E7_9FLAO Proton/glutamate symporter OS=Polaribacter irgensii 23-P
Align length 51
Score (bit) 35.8
E-value 1.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945403|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_D05, 5'
(280 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A4C0E7|A4C0E7_9FLAO Proton/glutamate symporter OS=Polaribacte... 36 1.1
tr|A8UM99|A8UM99_9FLAO Proton/glutamate symporter OS=Flavobacter... 34 3.2
tr|A2U271|A2U271_9FLAO C4-dicarboxylate transport protein 2 OS=P... 34 4.2
tr|A9DVS6|A9DVS6_9FLAO Chorismate synthase OS=Kordia algicida OT... 33 9.4

>tr|A4C0E7|A4C0E7_9FLAO Proton/glutamate symporter OS=Polaribacter
irgensii 23-P GN=PI23P_09690 PE=4 SV=1
Length = 442

Score = 35.8 bits (81), Expect = 1.1
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -3

Query: 266 LFGFLLI-----DKTKPLYFLKYHSPNQLLLFHTHTSKHTSPTVNAKQSQH 129
+ GF LI K PL+FLK SP QLL F T +S T P + +H
Sbjct: 248 MIGFYLILVSVYTKKSPLWFLKQISPAQLLAFSTSSSAATLPVTMERVEEH 298


>tr|A8UM99|A8UM99_9FLAO Proton/glutamate symporter
OS=Flavobacteriales bacterium ALC-1 GN=FBALC1_08538 PE=4
SV=1
Length = 441

Score = 34.3 bits (77), Expect = 3.2
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -3

Query: 248 IDKTKPLYFLKYHSPNQLLLFHTHTSKHTSPTVNAKQSQH 129
I K P +FLK SP QLL F T +S T P + +H
Sbjct: 260 ITKKNPFWFLKQMSPAQLLAFSTSSSAATLPVTMERVEEH 299


>tr|A2U271|A2U271_9FLAO C4-dicarboxylate transport protein 2
OS=Polaribacter sp. MED152 GN=MED152_02010 PE=4 SV=1
Length = 441

Score = 33.9 bits (76), Expect = 4.2
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -3

Query: 266 LFGFLLI-----DKTKPLYFLKYHSPNQLLLFHTHTSKHTSPTVNAKQSQH 129
+ GF L+ K P++FLK SP QLL F T +S T P + +H
Sbjct: 248 MIGFYLLLVSVYTKKSPVWFLKQISPAQLLAFSTSSSAATLPVTMERVEEH 298


>tr|A9DVS6|A9DVS6_9FLAO Chorismate synthase OS=Kordia algicida OT-1
GN=KAOT1_03592 PE=4 SV=1
Length = 482

Score = 32.7 bits (73), Expect = 9.4
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3

Query: 242 KTKPLYFLKYHSPNQLLLFHTHTSKHTSPTVNAKQSQH 129
K P +FLK SP QLL F T +S T P + +H
Sbjct: 302 KKSPFWFLKQISPAQLLAFSTSSSAATLPVTMERVEEH 339