DK945366
Clone id YMU02A01NGRL0009_B05
Library
Length 347
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_B05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
ACAGGTGGGCAACTTGTTTACGCAGATCTGACGCGGTATCCCTGCATTCTGATGCATACA
TCTGATGTGGCACTTGCTGGAGCTTGCTTTGTCAGGGTGCATGCATTTGATGTGGAGTTA
TCCATAATTTCTGAACAATTTTGCCAGCCCACAGAATTTTGTACAAATGCCCCCTTTATC
TTGGTTTTAGATTATGCTTAGCCTGTGGGCAGGAAAGGTGGAGTGGCCTTATTTTATTTC
TTGAGCTTGCCCATTGGGCTTCTCATTTTTGTACATATAGAAAATTATAATATAATTATG
ACAGGCATGGTTAGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6FA90
Definition sp|Q6FA90|DCTA_ACIAD C4-dicarboxylate transport protein OS=Acinetobacter sp. (strain ADP1)
Align length 45
Score (bit) 31.6
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945366|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_B05, 5'
(317 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6FA90|DCTA_ACIAD C4-dicarboxylate transport protein OS=Acine... 32 1.3
sp|Q9PJX9|Y697_CHLMU Probable metal transport system ATP-binding... 30 2.8
sp|A8G823|DCTA_SERP5 C4-dicarboxylate transport protein OS=Serra... 30 2.8
sp|Q3YVR0|DCTA_SHISS C4-dicarboxylate transport protein OS=Shige... 30 3.7
sp|Q83PS4|DCTA_SHIFL C4-dicarboxylate transport protein OS=Shige... 30 3.7
sp|Q0SZC4|DCTA_SHIF8 C4-dicarboxylate transport protein OS=Shige... 30 3.7
sp|Q327T6|DCTA_SHIDS C4-dicarboxylate transport protein OS=Shige... 30 3.7
sp|Q31V97|DCTA_SHIBS C4-dicarboxylate transport protein OS=Shige... 30 3.7
sp|P50334|DCTA_SALTY Aerobic C4-dicarboxylate transport protein ... 30 3.7
sp|A9MUP5|DCTA_SALPB C4-dicarboxylate transport protein OS=Salmo... 30 3.7
sp|Q5PJR1|DCTA_SALPA C4-dicarboxylate transport protein OS=Salmo... 30 3.7
sp|Q57IK8|DCTA_SALCH C4-dicarboxylate transport protein OS=Salmo... 30 3.7
sp|A9MLJ4|DCTA_SALAR C4-dicarboxylate transport protein OS=Salmo... 30 3.7
sp|Q21YI0|DCTA_RHOFD C4-dicarboxylate transport protein OS=Rhodo... 30 3.7
sp|A6TFD1|DCTA_KLEP7 C4-dicarboxylate transport protein OS=Klebs... 30 3.7
sp|A4WFV0|DCTA_ENT38 C4-dicarboxylate transport protein OS=Enter... 30 3.7
sp|Q1R575|DCTA_ECOUT C4-dicarboxylate transport protein OS=Esche... 30 3.7
sp|P0A830|DCTA_ECOLI Aerobic C4-dicarboxylate transport protein ... 30 3.7
sp|B1J0A5|DCTA_ECOLC C4-dicarboxylate transport protein OS=Esche... 30 3.7
sp|P0A831|DCTA_ECOL6 Aerobic C4-dicarboxylate transport protein ... 30 3.7
sp|Q0TBS5|DCTA_ECOL5 C4-dicarboxylate transport protein OS=Esche... 30 3.7
sp|A1AH70|DCTA_ECOK1 C4-dicarboxylate transport protein OS=Esche... 30 3.7
sp|A8A5Y8|DCTA_ECOHS C4-dicarboxylate transport protein OS=Esche... 30 3.7
sp|Q8X5M2|DCTA_ECO57 Aerobic C4-dicarboxylate transport protein ... 30 3.7
sp|A7ZT69|DCTA_ECO24 C4-dicarboxylate transport protein OS=Esche... 30 3.7
sp|A8ARA1|DCTA_CITK8 C4-dicarboxylate transport protein OS=Citro... 30 3.7
sp|Q664D7|DCTA_YERPS C4-dicarboxylate transport protein OS=Yersi... 30 4.8
sp|A4TR01|DCTA_YERPP C4-dicarboxylate transport protein OS=Yersi... 30 4.8
sp|Q1CDG1|DCTA_YERPN C4-dicarboxylate transport protein OS=Yersi... 30 4.8
sp|Q8ZA28|DCTA_YERPE C4-dicarboxylate transport protein OS=Yersi... 30 4.8

>sp|Q6FA90|DCTA_ACIAD C4-dicarboxylate transport protein
OS=Acinetobacter sp. (strain ADP1) GN=dctA PE=3 SV=1
Length = 448

Score = 31.6 bits (70), Expect = 1.3
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +1

Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267
P FCT I ++ VG+ GGVAL YF ++L IGLL+
Sbjct: 66 PVIFCTVVSGIAGMESMKSVGKTGGVALLYFEVVSTIALLIGLLV 110


>sp|Q9PJX9|Y697_CHLMU Probable metal transport system ATP-binding
protein TC_0697 OS=Chlamydia muridarum GN=TC_0697 PE=3
SV=1
Length = 236

Score = 30.4 bits (67), Expect = 2.8
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1

Query: 16 VYADLTRYPCILMHTSDVALAGACFVRVHAFDVELSIISEQFCQPTEFCTN 168
+ +DL ++ ILM T D+ CF RV + +L+ +++ FC N
Sbjct: 180 ILSDLNKHCTILMITHDLHHTAGCFNRVFFMNKKLTALADTTTISERFCCN 230


>sp|A8G823|DCTA_SERP5 C4-dicarboxylate transport protein OS=Serratia
proteamaculans (strain 568) GN=dctA PE=3 SV=1
Length = 429

Score = 30.4 bits (67), Expect = 2.8
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +1

Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267
P FCT I ++ VGR G +AL YF ++L IGLLI
Sbjct: 51 PVIFCTVVTGIAGMESMKAVGRTGAIALLYFEIVSTIALLIGLLI 95


>sp|Q3YVR0|DCTA_SHISS C4-dicarboxylate transport protein OS=Shigella
sonnei (strain Ss046) GN=dctA PE=3 SV=1
Length = 428

Score = 30.0 bits (66), Expect = 3.7
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +1

Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267
P FCT I ++ VGR G VAL YF ++L IGL+I
Sbjct: 51 PVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLII 95


>sp|Q83PS4|DCTA_SHIFL C4-dicarboxylate transport protein OS=Shigella
flexneri GN=dctA PE=3 SV=1
Length = 428

Score = 30.0 bits (66), Expect = 3.7
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +1

Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267
P FCT I ++ VGR G VAL YF ++L IGL+I
Sbjct: 51 PVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLII 95


>sp|Q0SZC4|DCTA_SHIF8 C4-dicarboxylate transport protein OS=Shigella
flexneri serotype 5b (strain 8401) GN=dctA PE=3 SV=1
Length = 428

Score = 30.0 bits (66), Expect = 3.7
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +1

Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267
P FCT I ++ VGR G VAL YF ++L IGL+I
Sbjct: 51 PVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLII 95


>sp|Q327T6|DCTA_SHIDS C4-dicarboxylate transport protein OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=dctA PE=3 SV=1
Length = 428

Score = 30.0 bits (66), Expect = 3.7
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +1

Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267
P FCT I ++ VGR G VAL YF ++L IGL+I
Sbjct: 51 PVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLII 95


>sp|Q31V97|DCTA_SHIBS C4-dicarboxylate transport protein OS=Shigella
boydii serotype 4 (strain Sb227) GN=dctA PE=3 SV=1
Length = 428

Score = 30.0 bits (66), Expect = 3.7
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +1

Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267
P FCT I ++ VGR G VAL YF ++L IGL+I
Sbjct: 51 PVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLII 95


>sp|P50334|DCTA_SALTY Aerobic C4-dicarboxylate transport protein
OS=Salmonella typhimurium GN=dctA PE=3 SV=1
Length = 428

Score = 30.0 bits (66), Expect = 3.7
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +1

Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267
P FCT I ++ VGR G VAL YF ++L IGL+I
Sbjct: 51 PVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLII 95


>sp|A9MUP5|DCTA_SALPB C4-dicarboxylate transport protein
OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
GN=dctA PE=3 SV=1
Length = 428

Score = 30.0 bits (66), Expect = 3.7
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +1

Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267
P FCT I ++ VGR G VAL YF ++L IGL+I
Sbjct: 51 PVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLII 95


tr_hit_id B6K934
Definition tr|B6K934|B6K934_TOXGO Helix-hairpin-helix motif-containing protein OS=Toxoplasma gondii ME49
Align length 84
Score (bit) 34.7
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945366|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_B05, 5'
(317 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6K934|B6K934_TOXGO Helix-hairpin-helix motif-containing prot... 35 2.4
tr|O05708|O05708_TREPA Octaprenyl-diphosphate synthase OS=Trepon... 33 5.4
tr|B2S3S2|B2S3S2_TREPS Octaprenyl-diphosphate synthase OS=Trepon... 33 5.4

>tr|B6K934|B6K934_TOXGO Helix-hairpin-helix motif-containing protein
OS=Toxoplasma gondii ME49 GN=TGME49_113470 PE=4 SV=1
Length = 833

Score = 34.7 bits (78), Expect = 2.4
Identities = 25/84 (29%), Positives = 37/84 (44%)
Frame = -1

Query: 272 TKMRSPMGKLKK*NKATPPFLPTG*A*SKTKIKGAFVQNSVGWQNCSEIMDNSTSNACTL 93
T R P K + +TP L KT +K Q S G+ +CS +S+ + C+
Sbjct: 125 TAGRQPSKKKGEGGTSTPSILRFFAKQPKTCMKRNSPQGSSGFLSCSSSSSSSSCSPCSS 184

Query: 92 TKQAPASATSDVCIRMQGYRVRSA 21
+ +SA+S C R G R A
Sbjct: 185 SSSPCSSASSSSCSRSAGANCREA 208


>tr|O05708|O05708_TREPA Octaprenyl-diphosphate synthase OS=Treponema
pallidum GN=TP_0683 PE=3 SV=1
Length = 364

Score = 33.5 bits (75), Expect = 5.4
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +3

Query: 195 CLACGQERWSGLILFL--ELAHWASHFCTYRKL 287
C++CG +RW L+L L ELAH A CT+RKL
Sbjct: 51 CVSCGGKRWRPLLLILSAELAH-ACVQCTHRKL 82


>tr|B2S3S2|B2S3S2_TREPS Octaprenyl-diphosphate synthase OS=Treponema
pallidum subsp. pallidum (strain SS14) GN=TPASS_0683
PE=4 SV=1
Length = 364

Score = 33.5 bits (75), Expect = 5.4
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +3

Query: 195 CLACGQERWSGLILFL--ELAHWASHFCTYRKL 287
C++CG +RW L+L L ELAH A CT+RKL
Sbjct: 51 CVSCGGKRWRPLLLILSAELAH-ACVQCTHRKL 82