DK945366 |
Clone id |
YMU02A01NGRL0009_B05 |
Library |
YMU02 |
Length |
347 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_B05. 5' end sequence. |
Accession |
DK945366 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL1495Contig1 |
Sequence |
ACAGGTGGGCAACTTGTTTACGCAGATCTGACGCGGTATCCCTGCATTCTGATGCATACA TCTGATGTGGCACTTGCTGGAGCTTGCTTTGTCAGGGTGCATGCATTTGATGTGGAGTTA TCCATAATTTCTGAACAATTTTGCCAGCCCACAGAATTTTGTACAAATGCCCCCTTTATC TTGGTTTTAGATTATGCTTAGCCTGTGGGCAGGAAAGGTGGAGTGGCCTTATTTTATTTC TTGAGCTTGCCCATTGGGCTTCTCATTTTTGTACATATAGAAAATTATAATATAATTATG ACAGGCATGGTTAGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6FA90 |
Definition |
sp|Q6FA90|DCTA_ACIAD C4-dicarboxylate transport protein OS=Acinetobacter sp. (strain ADP1) |
Align length |
45 |
Score (bit) |
31.6 |
E-value |
1.3 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945366|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0009_B05, 5' (317 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q6FA90|DCTA_ACIAD C4-dicarboxylate transport protein OS=Acine... 32 1.3 sp|Q9PJX9|Y697_CHLMU Probable metal transport system ATP-binding... 30 2.8 sp|A8G823|DCTA_SERP5 C4-dicarboxylate transport protein OS=Serra... 30 2.8 sp|Q3YVR0|DCTA_SHISS C4-dicarboxylate transport protein OS=Shige... 30 3.7 sp|Q83PS4|DCTA_SHIFL C4-dicarboxylate transport protein OS=Shige... 30 3.7 sp|Q0SZC4|DCTA_SHIF8 C4-dicarboxylate transport protein OS=Shige... 30 3.7 sp|Q327T6|DCTA_SHIDS C4-dicarboxylate transport protein OS=Shige... 30 3.7 sp|Q31V97|DCTA_SHIBS C4-dicarboxylate transport protein OS=Shige... 30 3.7 sp|P50334|DCTA_SALTY Aerobic C4-dicarboxylate transport protein ... 30 3.7 sp|A9MUP5|DCTA_SALPB C4-dicarboxylate transport protein OS=Salmo... 30 3.7 sp|Q5PJR1|DCTA_SALPA C4-dicarboxylate transport protein OS=Salmo... 30 3.7 sp|Q57IK8|DCTA_SALCH C4-dicarboxylate transport protein OS=Salmo... 30 3.7 sp|A9MLJ4|DCTA_SALAR C4-dicarboxylate transport protein OS=Salmo... 30 3.7 sp|Q21YI0|DCTA_RHOFD C4-dicarboxylate transport protein OS=Rhodo... 30 3.7 sp|A6TFD1|DCTA_KLEP7 C4-dicarboxylate transport protein OS=Klebs... 30 3.7 sp|A4WFV0|DCTA_ENT38 C4-dicarboxylate transport protein OS=Enter... 30 3.7 sp|Q1R575|DCTA_ECOUT C4-dicarboxylate transport protein OS=Esche... 30 3.7 sp|P0A830|DCTA_ECOLI Aerobic C4-dicarboxylate transport protein ... 30 3.7 sp|B1J0A5|DCTA_ECOLC C4-dicarboxylate transport protein OS=Esche... 30 3.7 sp|P0A831|DCTA_ECOL6 Aerobic C4-dicarboxylate transport protein ... 30 3.7 sp|Q0TBS5|DCTA_ECOL5 C4-dicarboxylate transport protein OS=Esche... 30 3.7 sp|A1AH70|DCTA_ECOK1 C4-dicarboxylate transport protein OS=Esche... 30 3.7 sp|A8A5Y8|DCTA_ECOHS C4-dicarboxylate transport protein OS=Esche... 30 3.7 sp|Q8X5M2|DCTA_ECO57 Aerobic C4-dicarboxylate transport protein ... 30 3.7 sp|A7ZT69|DCTA_ECO24 C4-dicarboxylate transport protein OS=Esche... 30 3.7 sp|A8ARA1|DCTA_CITK8 C4-dicarboxylate transport protein OS=Citro... 30 3.7 sp|Q664D7|DCTA_YERPS C4-dicarboxylate transport protein OS=Yersi... 30 4.8 sp|A4TR01|DCTA_YERPP C4-dicarboxylate transport protein OS=Yersi... 30 4.8 sp|Q1CDG1|DCTA_YERPN C4-dicarboxylate transport protein OS=Yersi... 30 4.8 sp|Q8ZA28|DCTA_YERPE C4-dicarboxylate transport protein OS=Yersi... 30 4.8
>sp|Q6FA90|DCTA_ACIAD C4-dicarboxylate transport protein OS=Acinetobacter sp. (strain ADP1) GN=dctA PE=3 SV=1 Length = 448
Score = 31.6 bits (70), Expect = 1.3 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%) Frame = +1
Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267 P FCT I ++ VG+ GGVAL YF ++L IGLL+ Sbjct: 66 PVIFCTVVSGIAGMESMKSVGKTGGVALLYFEVVSTIALLIGLLV 110
>sp|Q9PJX9|Y697_CHLMU Probable metal transport system ATP-binding protein TC_0697 OS=Chlamydia muridarum GN=TC_0697 PE=3 SV=1 Length = 236
Score = 30.4 bits (67), Expect = 2.8 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +1
Query: 16 VYADLTRYPCILMHTSDVALAGACFVRVHAFDVELSIISEQFCQPTEFCTN 168 + +DL ++ ILM T D+ CF RV + +L+ +++ FC N Sbjct: 180 ILSDLNKHCTILMITHDLHHTAGCFNRVFFMNKKLTALADTTTISERFCCN 230
>sp|A8G823|DCTA_SERP5 C4-dicarboxylate transport protein OS=Serratia proteamaculans (strain 568) GN=dctA PE=3 SV=1 Length = 429
Score = 30.4 bits (67), Expect = 2.8 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%) Frame = +1
Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267 P FCT I ++ VGR G +AL YF ++L IGLLI Sbjct: 51 PVIFCTVVTGIAGMESMKAVGRTGAIALLYFEIVSTIALLIGLLI 95
>sp|Q3YVR0|DCTA_SHISS C4-dicarboxylate transport protein OS=Shigella sonnei (strain Ss046) GN=dctA PE=3 SV=1 Length = 428
Score = 30.0 bits (66), Expect = 3.7 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%) Frame = +1
Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267 P FCT I ++ VGR G VAL YF ++L IGL+I Sbjct: 51 PVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLII 95
>sp|Q83PS4|DCTA_SHIFL C4-dicarboxylate transport protein OS=Shigella flexneri GN=dctA PE=3 SV=1 Length = 428
Score = 30.0 bits (66), Expect = 3.7 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%) Frame = +1
Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267 P FCT I ++ VGR G VAL YF ++L IGL+I Sbjct: 51 PVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLII 95
>sp|Q0SZC4|DCTA_SHIF8 C4-dicarboxylate transport protein OS=Shigella flexneri serotype 5b (strain 8401) GN=dctA PE=3 SV=1 Length = 428
Score = 30.0 bits (66), Expect = 3.7 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%) Frame = +1
Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267 P FCT I ++ VGR G VAL YF ++L IGL+I Sbjct: 51 PVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLII 95
>sp|Q327T6|DCTA_SHIDS C4-dicarboxylate transport protein OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dctA PE=3 SV=1 Length = 428
Score = 30.0 bits (66), Expect = 3.7 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%) Frame = +1
Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267 P FCT I ++ VGR G VAL YF ++L IGL+I Sbjct: 51 PVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLII 95
>sp|Q31V97|DCTA_SHIBS C4-dicarboxylate transport protein OS=Shigella boydii serotype 4 (strain Sb227) GN=dctA PE=3 SV=1 Length = 428
Score = 30.0 bits (66), Expect = 3.7 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%) Frame = +1
Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267 P FCT I ++ VGR G VAL YF ++L IGL+I Sbjct: 51 PVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLII 95
>sp|P50334|DCTA_SALTY Aerobic C4-dicarboxylate transport protein OS=Salmonella typhimurium GN=dctA PE=3 SV=1 Length = 428
Score = 30.0 bits (66), Expect = 3.7 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%) Frame = +1
Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267 P FCT I ++ VGR G VAL YF ++L IGL+I Sbjct: 51 PVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLII 95
>sp|A9MUP5|DCTA_SALPB C4-dicarboxylate transport protein OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dctA PE=3 SV=1 Length = 428
Score = 30.0 bits (66), Expect = 3.7 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%) Frame = +1
Query: 148 PTEFCTNAPFILVLDYA*PVGRKGGVALFYF-----LSLPIGLLI 267 P FCT I ++ VGR G VAL YF ++L IGL+I Sbjct: 51 PVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLII 95
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6K934 |
Definition |
tr|B6K934|B6K934_TOXGO Helix-hairpin-helix motif-containing protein OS=Toxoplasma gondii ME49 |
Align length |
84 |
Score (bit) |
34.7 |
E-value |
2.4 |
Report |
|