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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945237
Clone id YMU02A01NGRL0008_K16
Library
Length 336
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_K16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTATCAAGGCACCTGAAGTCAGTTCTTGCTTCCTGTATTTTAGACTTCTCAGGGGCAGCT
TTTCCTGTTTTTTTTCTTAAAACCTTATTACATTCAAAGCCAAGTCTTAGGCCAGTGAGT
CTAGTGTGTTATCTATGGCCATTCTCTTTAGCTGAGCTGTTCTGTGCCCTTGATCCTAAT
AGACATCTTTGGAAGGTCAATTCTTCTTTGTTTTCTGACAGTATATGCATGGCTTATCAA
AATAGCAGCAATGTACTACTGGTGAGAAGTCTTACCATTTTCTAATTATGTCAGAACTTT
TTAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P41470
Definition sp|P41470|Y070_NPVAC Uncharacterized 34.4 kDa protein in LEF3-IAP2 intergenic region OS=Autographa californica nuclear polyhedrosis virus
Align length 31
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945237|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_K16, 5'
         (306 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41470|Y070_NPVAC Uncharacterized 34.4 kDa protein in LEF3-IA...    31   1.7  
sp|Q52TG1|MATK_CALOL Maturase K OS=Caldesia oligococca GN=matK P...    30   2.9  
sp|Q9TNB2|MATK_MAIDI Maturase K OS=Maianthemum dilatatum GN=matK...    30   4.9  
sp|Q9TNA1|MATK_LIRPL Maturase K OS=Liriope platyphylla GN=matK P...    30   4.9  
sp|Q9TNB1|MATK_CONMJ Maturase K OS=Convallaria majalis GN=matK P...    30   4.9  
sp|Q9TNA5|MATK_ASPEL Maturase K OS=Aspidistra elatior GN=matK PE...    30   4.9  
sp|Q9TN89|MATK_BEARE Maturase K OS=Beaucarnea recurvata GN=matK ...    29   6.4  
sp|P57791|FACE2_MOUSE CAAX prenyl protease 2 OS=Mus musculus GN=...    29   6.4  
sp|Q9TMC8|MATK_GAGLU Maturase K OS=Gagea lutea GN=matK PE=3 SV=1       29   8.4  
sp|Q7YJH1|MATK_ASPLU Maturase K OS=Asphodeline lutea GN=matK PE=...    29   8.4  

>sp|P41470|Y070_NPVAC Uncharacterized 34.4 kDa protein in LEF3-IAP2
           intergenic region OS=Autographa californica nuclear
           polyhedrosis virus PE=4 SV=1
          Length = 290

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 256 VHCCYFDKPCIYCQKTKKN*PSKDVY*DQGH 164
           ++CC+F+K C  C + KKN  + ++Y   GH
Sbjct: 113 LNCCWFNKNCYMCLEYKKNLYNVNLYTIDGH 143


>sp|Q52TG1|MATK_CALOL Maturase K OS=Caldesia oligococca GN=matK PE=3
           SV=1
          Length = 549

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +1

Query: 130 YLWPFSLAELFCALDPNRHLWKVNSSLFSDS-ICMAYQNSSNVLLVRSLTIF*LCQNFLI 306
           +L+P    E   AL  + H   +N S+F +S   + Y N S+++LV+ L +    QNFLI
Sbjct: 18  FLYPLLFQEYIYAL-AHIHNHGLNGSIFYESGEVLGYDNKSSLILVKRLILRMYQQNFLI 76


>sp|Q9TNB2|MATK_MAIDI Maturase K OS=Maianthemum dilatatum GN=matK
           PE=3 SV=1
          Length = 520

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 130 YLWPFSLAELFCALDPNRHLWKVNSSLFSDSI-CMAYQNSSNVLLVRSLTIF*LCQNFLI 306
           +L+P    E   AL  N  L   N S+F + +    Y N S+++LV+ L      QNFLI
Sbjct: 18  FLYPLLFQEYIYALAHNHGL---NGSIFYEPVEVFGYDNKSSLVLVKRLITRIYQQNFLI 74


>sp|Q9TNA1|MATK_LIRPL Maturase K OS=Liriope platyphylla GN=matK PE=3
           SV=1
          Length = 520

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 130 YLWPFSLAELFCALDPNRHLWKVNSSLFSDSI-CMAYQNSSNVLLVRSLTIF*LCQNFLI 306
           +L+P    E   AL  N  L   N S+F + +    Y N S+++LV+ L      QNFLI
Sbjct: 18  FLYPLLFQEYIYALAHNHGL---NGSIFYEPVEVFGYDNKSSLVLVKRLITRIYQQNFLI 74


>sp|Q9TNB1|MATK_CONMJ Maturase K OS=Convallaria majalis GN=matK PE=3
           SV=1
          Length = 520

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 130 YLWPFSLAELFCALDPNRHLWKVNSSLFSDSI-CMAYQNSSNVLLVRSLTIF*LCQNFLI 306
           +L+P    E   AL  N  L   N S+F + +    Y N S+++LV+ L      QNFLI
Sbjct: 18  FLYPLLFQEYIYALAHNHGL---NGSIFYEPVEVFGYDNKSSLVLVKRLITRIYQQNFLI 74


>sp|Q9TNA5|MATK_ASPEL Maturase K OS=Aspidistra elatior GN=matK PE=3
           SV=1
          Length = 520

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 130 YLWPFSLAELFCALDPNRHLWKVNSSLFSDSI-CMAYQNSSNVLLVRSLTIF*LCQNFLI 306
           +L+P    E   AL  N  L   N S+F + +    Y N S+++LV+ L      QNFLI
Sbjct: 18  FLYPLLFQEYIYALAHNHGL---NGSIFYEPVEVFGYDNKSSLVLVKRLITRIYQQNFLI 74


>sp|Q9TN89|MATK_BEARE Maturase K OS=Beaucarnea recurvata GN=matK
           PE=3 SV=1
          Length = 520

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 130 YLWPFSLAELFCALDPNRHLWKVNSSLFSDSI-CMAYQNSSNVLLVRSLTIF*LCQNFLI 306
           +L+P    E   AL  N  L   N S+F + +    Y N S+++LV+ L I    QNF I
Sbjct: 18  FLYPLLFQEYIYALAHNHGL---NGSIFYEPVEVFGYDNKSSLVLVKRLIIRIYQQNFWI 74


>sp|P57791|FACE2_MOUSE CAAX prenyl protease 2 OS=Mus musculus
           GN=Rce1 PE=2 SV=1
          Length = 329

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
 Frame = +1

Query: 76  LKTLLHSKPSLRPVS---------LVCYLWPFSLAELFCALDPNRHLWKVNSSLFSDSIC 228
           L+ L  S+P  +P S         L C++  FS   L C+   + ++WK  S L  D   
Sbjct: 9   LRLLSVSRPERQPESAALSGPGSGLCCWVSVFSCFSLACSYVGSLYVWK--SELPRDHPA 66

Query: 229 MAYQNSSNVLLVRSLT 276
           +  + S++VL+V SL+
Sbjct: 67  VIKRRSTSVLVVSSLS 82


>sp|Q9TMC8|MATK_GAGLU Maturase K OS=Gagea lutea GN=matK PE=3 SV=1
          Length = 516

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 130 YLWPFSLAELFCALDPNRHLWKVNSSLFSDSI-CMAYQNSSNVLLVRSLTIF*LCQNFLI 306
           +L+P  L E    L  +  L   N S+F + I  M Y N S+++LV+ L I    QNF I
Sbjct: 18  FLYPLLLQEYIYTLAYDDGL---NGSIFYEPIEFMGYDNKSSLVLVKRLIIRMYQQNFFI 74


>sp|Q7YJH1|MATK_ASPLU Maturase K OS=Asphodeline lutea GN=matK PE=3
           SV=1
          Length = 523

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 130 YLWPFSLAELFCALDPNRHLWKVNSSLFSDSI-CMAYQNSSNVLLVRSLTIF*LCQNFLI 306
           +L+P    E   AL    H   +NSS+F + +    Y N S++ LV+ L      QNFLI
Sbjct: 18  FLYPLLFQEYIYAL---AHDHGLNSSIFYEPVEIFGYDNKSSLALVKRLITRIYQQNFLI 74
tr_hit_id Q9TN90
Definition tr|Q9TN90|Q9TN90_9ASPA Maturase K OS=Peliosanthes campanulata
Align length 60
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945237|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_K16, 5'
         (306 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9TN90|Q9TN90_9ASPA Maturase K OS=Peliosanthes campanulata GN...    35   2.5  
tr|A7NI30|A7NI30_ROSCS Major facilitator superfamily MFS_1 OS=Ro...    33   5.5  
tr|Q12L88|Q12L88_SHEDO Permeases-like protein OS=Shewanella deni...    33   7.2  

>tr|Q9TN90|Q9TN90_9ASPA Maturase K OS=Peliosanthes campanulata
           GN=matK PE=3 SV=1
          Length = 522

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 130 YLWPFSLAELFCALDPNRHLWKVNSSLFSDSI-CMAYQNSSNVLLVRSLTIF*LCQNFLI 306
           +L+P    E   AL  N  L  VN SLF + +    Y N S+++LV+ L I    QNFLI
Sbjct: 18  FLYPLLFQEYIYALAHNHGL-NVNGSLFYEPVEVFGYDNKSSLVLVKRLIIRIYQQNFLI 76


>tr|A7NI30|A7NI30_ROSCS Major facilitator superfamily MFS_1
           OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8)
           GN=Rcas_1026 PE=4 SV=1
          Length = 407

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 188 FGRSILLC--FLTVYAWLIKIAAMYYW*EVLPFSNYVR 295
           FGR +LLC   LT   WL+ +AA+++  E LP   Y R
Sbjct: 99  FGRGLLLCGALLTGAPWLLALAALFWIAEALPAPAYAR 136


>tr|Q12L88|Q12L88_SHEDO Permeases-like protein OS=Shewanella
           denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
           GN=Sden_2508 PE=4 SV=1
          Length = 319

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +1

Query: 46  FSGAAFPVFFLKTLLHSKPSLRPVSLV----CYLWPFSLAELFCALDPNRHLWKVNSSL 210
           F GA F  + L    H   SL P++ +      L PF+L  LF  L+PN H W+  S L
Sbjct: 155 FIGACFTAYIL---WHRSQSLEPITALKRETTLLLPFALLILFIVLEPNAH-WEALSQL 209