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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945157
Clone id YMU02A01NGRL0008_G18
Library
Length 360
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_G18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCCTGCGCCAGGAGATGCCTCTGGTCCTGGGCCAAATGCAGGTGGTTCAACAAAGAGCCC
AGGAGGTGATGACGTAATTGATGCAGACTTTACTGATAGTGCGTAAGCTCCTTTTGTGGC
GATTGGTTGTTGCATCTGGAATGAGCAAAGTGCAATAGTCCAATGCGGACCTCTGGACTA
TAAGTTTTCTGGAGAGAGTCCACTCAATTTTGCTACTCTTGAGGATTTTTTAGCTTTAAT
GTAAAGTAGTAGCTGTCCTCAATGGACGCATTTTTACACNAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8YW74
Definition sp|Q8YW74|DNAK2_ANASP Chaperone protein dnaK2 OS=Anabaena sp. (strain PCC 7120)
Align length 30
Score (bit) 43.1
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945157|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_G18, 5'
         (280 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8YW74|DNAK2_ANASP Chaperone protein dnaK2 OS=Anabaena sp. (s...    43   4e-04
sp|A2BZ91|DNAK_PROM5 Chaperone protein dnaK OS=Prochlorococcus m...    35   0.15 
sp|Q7NDH1|DNAK_GLOVI Chaperone protein dnaK OS=Gloeobacter viola...    35   0.15 
sp|P22358|DNAK2_SYNY3 Chaperone protein dnaK2 OS=Synechocystis s...    35   0.15 
sp|Q01100|DNAK_HALMA Chaperone protein dnaK OS=Haloarcula marism...    34   0.26 
sp|Q7U3C4|DNAK2_SYNPX Chaperone protein dnaK2 OS=Synechococcus s...    33   0.44 
sp|Q5RBM8|RBM12_PONAB RNA-binding protein 12 OS=Pongo abelii GN=...    33   0.58 
sp|Q8SQ27|RBM12_MACMU RNA-binding protein 12 OS=Macaca mulatta G...    33   0.58 
sp|Q9NTZ6|RBM12_HUMAN RNA-binding protein 12 OS=Homo sapiens GN=...    33   0.58 
sp|Q02028|HSP7S_PEA Stromal 70 kDa heat shock-related protein, c...    33   0.58 
sp|Q7V3T5|DNAK2_PROMM Chaperone protein dnaK2 OS=Prochlorococcus...    33   0.58 
sp|P30721|DNAK_CLOAB Chaperone protein dnaK OS=Clostridium aceto...    32   0.75 
sp|Q7UZG3|DNAK2_PROMP Chaperone protein dnaK2 OS=Prochlorococcus...    32   1.3  
sp|O05700|DNAK_RHOS7 Chaperone protein dnaK OS=Rhodopseudomonas ...    31   1.7  
sp|Q39PT7|DNAK_GEOMG Chaperone protein dnaK OS=Geobacter metalli...    30   2.9  
sp|Q826F6|DNAK2_STRAW Chaperone protein dnaK2 OS=Streptomyces av...    30   3.7  
sp|Q9UPU5|UBP24_HUMAN Ubiquitin carboxyl-terminal hydrolase 24 O...    30   4.9  
sp|Q9U6L5|PEB1_DROME Ejaculatory bulb-specific protein 1 OS=Dros...    30   4.9  
sp|Q3IUI0|DNAK_NATPD Chaperone protein dnaK OS=Natronomonas phar...    30   4.9  
sp|A6LRN4|DNAK_CLOB8 Chaperone protein dnaK OS=Clostridium beije...    30   4.9  
sp|Q98937|FOXD1_CHICK Forkhead box protein D1 OS=Gallus gallus G...    29   6.4  
sp|Q2LUH6|DNAK_SYNAS Chaperone protein dnaK OS=Syntrophus acidit...    29   6.4  
sp|Q54215|DNAK_STRGR Chaperone protein dnaK OS=Streptomyces gris...    29   6.4  
sp|Q1MPW1|DNAK_LAWIP Chaperone protein dnaK OS=Lawsonia intracel...    29   6.4  
sp|O88778|BSN_RAT Protein bassoon OS=Rattus norvegicus GN=Bsn PE...    29   6.4  
sp|O88737|BSN_MOUSE Protein bassoon OS=Mus musculus GN=Bsn PE=1 ...    29   6.4  
sp|Q7Z6J2|GRASP_HUMAN General receptor for phosphoinositides 1-a...    29   8.3  
sp|A0PLQ1|DNAK_MYCUA Chaperone protein dnaK OS=Mycobacterium ulc...    29   8.3  
sp|A1A3P5|DNAK_BIFAA Chaperone protein dnaK OS=Bifidobacterium a...    29   8.3  
sp|Q8DI58|DNAK2_THEEB Chaperone protein dnaK2 OS=Thermosynechoco...    29   8.3  

>sp|Q8YW74|DNAK2_ANASP Chaperone protein dnaK2 OS=Anabaena sp.
           (strain PCC 7120) GN=dnaK2 PE=2 SV=1
          Length = 633

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +2

Query: 11  GDASGPGPNAGGSTKSPGGDDVIDADFTDS 100
           G A G  P  GG+T S GGDDVIDADFT++
Sbjct: 603 GAAPGAAPQDGGTTSSDGGDDVIDADFTET 632


>sp|A2BZ91|DNAK_PROM5 Chaperone protein dnaK OS=Prochlorococcus
           marinus (strain MIT 9515) GN=dnaK PE=2 SV=1
          Length = 634

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 18/33 (54%), Positives = 20/33 (60%)
 Frame = +2

Query: 2   PAPGDASGPGPNAGGSTKSPGGDDVIDADFTDS 100
           PAPG     GPNA  S      DDVIDADFT++
Sbjct: 605 PAPG-----GPNANASDDKGPDDDVIDADFTET 632


>sp|Q7NDH1|DNAK_GLOVI Chaperone protein dnaK OS=Gloeobacter
           violaceus GN=dnaK PE=2 SV=1
          Length = 638

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 4/34 (11%)
 Frame = +2

Query: 11  GDASGPGPNA----GGSTKSPGGDDVIDADFTDS 100
           G A+GP   A    GG++ + GGDDVIDA+FT++
Sbjct: 604 GAAAGPDEGAPSGSGGTSGTRGGDDVIDAEFTET 637


>sp|P22358|DNAK2_SYNY3 Chaperone protein dnaK2 OS=Synechocystis sp.
           (strain PCC 6803) GN=dnaK2 PE=2 SV=1
          Length = 636

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = +2

Query: 17  ASGPGPNAGGSTKSPGGDDVIDADFTD 97
           A G GP AG  T S GGDDVIDA+F++
Sbjct: 609 APGAGPEAG--TSSGGGDDVIDAEFSE 633


>sp|Q01100|DNAK_HALMA Chaperone protein dnaK OS=Haloarcula
           marismortui GN=dnaK PE=3 SV=2
          Length = 635

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +2

Query: 8   PGDASGPGPNAGGSTKSPGGDDVIDADFTD 97
           PG A+GPG  AGG+ +   G++ +DADF D
Sbjct: 600 PGGAAGPGGAAGGAAEQ--GEEYVDADFED 627


>sp|Q7U3C4|DNAK2_SYNPX Chaperone protein dnaK2 OS=Synechococcus sp.
           (strain WH8102) GN=dnaK2 PE=2 SV=1
          Length = 637

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +2

Query: 5   APGDASGPGPNAGGSTKSPGG---DDVIDADFTDS 100
           A    + PG +AG S  S GG   DDVIDA+FT++
Sbjct: 602 AAAGGAAPGGDAGASAASGGGDASDDVIDAEFTET 636


>sp|Q5RBM8|RBM12_PONAB RNA-binding protein 12 OS=Pongo abelii
           GN=RBM12 PE=2 SV=1
          Length = 932

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = -2

Query: 69  SPPGLFVEPPAFGPGPEASPGAG 1
           S PG    PPAFGPGP   PG G
Sbjct: 814 SAPGHLGGPPAFGPGPGPGPGPG 836


>sp|Q8SQ27|RBM12_MACMU RNA-binding protein 12 OS=Macaca mulatta
           GN=RBM12 PE=2 SV=1
          Length = 932

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = -2

Query: 69  SPPGLFVEPPAFGPGPEASPGAG 1
           S PG    PPAFGPGP   PG G
Sbjct: 814 SAPGHLGGPPAFGPGPGPGPGPG 836


>sp|Q9NTZ6|RBM12_HUMAN RNA-binding protein 12 OS=Homo sapiens
           GN=RBM12 PE=1 SV=1
          Length = 932

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = -2

Query: 69  SPPGLFVEPPAFGPGPEASPGAG 1
           S PG    PPAFGPGP   PG G
Sbjct: 814 SAPGHLGGPPAFGPGPGPGPGPG 836


>sp|Q02028|HSP7S_PEA Stromal 70 kDa heat shock-related protein,
           chloroplastic OS=Pisum sativum GN=HSP70 PE=2 SV=1
          Length = 706

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = +2

Query: 8   PGDASGPGPNAGGSTKSPGGDDVIDADFTDS 100
           PG  SGP  ++G   + P GD VIDADFTDS
Sbjct: 678 PGSESGPSESSG--KEGPEGD-VIDADFTDS 705
tr_hit_id B8LM05
Definition tr|B8LM05|B8LM05_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 33
Score (bit) 44.7
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945157|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_G18, 5'
         (280 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LM05|B8LM05_PICSI Putative uncharacterized protein OS=Picea...    45   0.002
tr|A0ZAP6|A0ZAP6_NODSP Molecular chaperone DnaK OS=Nodularia spu...    44   0.005
tr|B8LLU0|B8LLU0_PICSI Putative uncharacterized protein OS=Picea...    44   0.005
tr|Q3MGG5|Q3MGG5_ANAVT Heat shock protein Hsp70 OS=Anabaena vari...    43   0.007
tr|A4ZYQ0|A4ZYQ0_PENAM Chloroplast heat shock protein 70 OS=Penn...    42   0.012
tr|B4B865|B4B865_9CHRO Chaperone protein DnaK OS=Cyanothece sp. ...    40   0.045
tr|B2J881|B2J881_NOSP7 Chaperone protein DnaK OS=Nostoc punctifo...    40   0.059
tr|Q116E2|Q116E2_TRIEI Chaperone protein DnaK OS=Trichodesmium e...    40   0.077
tr|A1WSF4|A1WSF4_VEREI Putative transmembrane protein OS=Vermine...    40   0.077
tr|B4VQI5|B4VQI5_9CYAN Chaperone protein DnaK OS=Microcoleus cht...    40   0.077
tr|A9RFC9|A9RFC9_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.077
tr|B7K5S9|B7K5S9_SYNP8 Chaperone protein DnaK OS=Synechococcus s...    39   0.13 
tr|B5W3B0|B5W3B0_SPIMA Chaperone protein DnaK OS=Arthrospira max...    39   0.13 
tr|B4BUD1|B4BUD1_9CHRO Chaperone protein DnaK OS=Cyanothece sp. ...    39   0.13 
tr|A3IRL4|A3IRL4_9CHRO Molecular chaperone DnaK OS=Cyanothece sp...    39   0.13 
tr|B1A009|B1A009_IPONI Chloroplast heat shock protein 70-1 OS=Ip...    39   0.13 
tr|Q2JI64|Q2JI64_SYNJB Chaperone protein DnaK OS=Synechococcus s...    39   0.17 
tr|Q9STW6|Q9STW6_ARATH Hsp 70-like protein OS=Arabidopsis thalia...    39   0.17 
tr|A9T251|A9T251_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.17 
tr|A8RMT1|A8RMT1_9CLOT Putative uncharacterized protein OS=Clost...    38   0.29 
tr|A7PGX4|A7PGX4_VITVI Chromosome chr17 scaffold_16, whole genom...    38   0.29 
tr|A5BEE7|A5BEE7_VITVI Putative uncharacterized protein OS=Vitis...    38   0.29 
tr|Q9SEW1|Q9SEW1_WHEAT Heat shock protein 70 OS=Triticum aestivu...    37   0.38 
tr|Q39603|Q39603_CHLRE Heat shock protein 70B OS=Chlamydomonas r...    37   0.38 
tr|A8HYV3|A8HYV3_CHLRE Heat shock protein 70B OS=Chlamydomonas r...    37   0.38 
tr|A1K1I1|A1K1I1_AZOSB Putative uncharacterized protein OS=Azoar...    37   0.50 
tr|A9PIM7|A9PIM7_POPJC Putative uncharacterized protein OS=Popul...    37   0.50 
tr|A3PFJ3|A3PFJ3_PROM0 Molecular chaperone DnaK2, heat shock pro...    37   0.65 
tr|Q1PJE6|Q1PJE6_PROMA Molecular chaperone DnaK2, heat shock pro...    37   0.65 
tr|Q4C9R1|Q4C9R1_CROWT Heat shock protein Hsp70 OS=Crocosphaera ...    36   0.85 

>tr|B8LM05|B8LM05_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 708

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +2

Query: 2   PAPGDASGPGPNAGGSTKSPGGDDVIDADFTDS 100
           P  G  +GPG + G   K+PGGDDVIDADFTDS
Sbjct: 678 PTTGGEAGPGSSGG---KAPGGDDVIDADFTDS 707


>tr|A0ZAP6|A0ZAP6_NODSP Molecular chaperone DnaK OS=Nodularia
           spumigena CCY 9414 GN=dnaK PE=3 SV=1
          Length = 633

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 22/34 (64%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
 Frame = +2

Query: 5   APGDASGPG--PNAGGSTKSPGGDDVIDADFTDS 100
           A GDA+ PG  P  GG T   GGDDVIDADFT+S
Sbjct: 600 AGGDAAAPGAAPQDGGPTPPGGGDDVIDADFTES 633


>tr|B8LLU0|B8LLU0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 709

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 21/33 (63%), Positives = 23/33 (69%)
 Frame = +2

Query: 2   PAPGDASGPGPNAGGSTKSPGGDDVIDADFTDS 100
           P  G  +GPG   G   K+PGGDDVIDADFTDS
Sbjct: 679 PTAGGEAGPGSPGG---KTPGGDDVIDADFTDS 708


>tr|Q3MGG5|Q3MGG5_ANAVT Heat shock protein Hsp70 OS=Anabaena
           variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_0295
           PE=3 SV=1
          Length = 633

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +2

Query: 11  GDASGPGPNAGGSTKSPGGDDVIDADFTDS 100
           G A G  P  GG+T S GGDDVIDADFT++
Sbjct: 603 GAAPGAAPQDGGTTSSDGGDDVIDADFTET 632


>tr|A4ZYQ0|A4ZYQ0_PENAM Chloroplast heat shock protein 70
           OS=Pennisetum americanum PE=2 SV=1
          Length = 679

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/33 (63%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = +2

Query: 5   APGDASGPGPNAGGSTKSPGGD-DVIDADFTDS 100
           APG +  PG +A GS + PGG+ DVIDADFTDS
Sbjct: 646 APGASPTPGADATGSPEKPGGEGDVIDADFTDS 678


>tr|B4B865|B4B865_9CHRO Chaperone protein DnaK OS=Cyanothece sp. PCC
           7822 GN=Cyan7822DRAFT_4810 PE=4 SV=1
          Length = 640

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 21/34 (61%), Positives = 27/34 (79%), Gaps = 2/34 (5%)
 Frame = +2

Query: 5   APGDASGP-GPNAGGST-KSPGGDDVIDADFTDS 100
           APGD +GP G  +GGST  S GGDDVIDA+F+++
Sbjct: 606 APGDGAGPNGGASGGSTGSSGGGDDVIDAEFSET 639


>tr|B2J881|B2J881_NOSP7 Chaperone protein DnaK OS=Nostoc punctiforme
           (strain ATCC 29133 / PCC 73102) GN=Npun_F0567 PE=4 SV=1
          Length = 634

 Score = 40.0 bits (92), Expect = 0.059
 Identities = 21/31 (67%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +2

Query: 11  GDASGPGPNAGGSTKSPG-GDDVIDADFTDS 100
           G A G  P  GGST S G GDDVIDADFT+S
Sbjct: 603 GAAPGAEPQDGGSTSSSGSGDDVIDADFTES 633


>tr|Q116E2|Q116E2_TRIEI Chaperone protein DnaK OS=Trichodesmium
           erythraeum (strain IMS101) GN=Tery_1306 PE=3 SV=1
          Length = 638

 Score = 39.7 bits (91), Expect = 0.077
 Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
 Frame = +2

Query: 5   APGDASGPGPNAGG---STKSPGGDDVIDADFTDS 100
           APG+ S P  +AG    S+ + GGDDVIDADFT++
Sbjct: 603 APGEGSTPNSDAGSGASSSNATGGDDVIDADFTET 637


>tr|A1WSF4|A1WSF4_VEREI Putative transmembrane protein
           OS=Verminephrobacter eiseniae (strain EF01-2)
           GN=Veis_4871 PE=3 SV=1
          Length = 959

 Score = 39.7 bits (91), Expect = 0.077
 Identities = 28/77 (36%), Positives = 35/77 (45%)
 Frame = -2

Query: 234 AKKSSRVAKLSGLSPENL*SRGPHWTIALCSFQMQQPIATKGAYALSVKSASITSSPPGL 55
           A+ S  +A+LS L   +  S     T A  + Q   P AT    A     A++T   P  
Sbjct: 365 AELSKNIAELSNLGTGSAKSNAAAQTTAPAAAQPAAPAAT----AQIAVPAAVTIPTPAA 420

Query: 54  FVEPPAFGPGPEASPGA 4
              PPA  P PEASPGA
Sbjct: 421 IPAPPAAPPAPEASPGA 437


>tr|B4VQI5|B4VQI5_9CYAN Chaperone protein DnaK OS=Microcoleus
           chthonoplastes PCC 7420 GN=MC7420_6409 PE=4 SV=1
          Length = 640

 Score = 39.7 bits (91), Expect = 0.077
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +2

Query: 5   APGDASGPGPNAGGSTKSPGGDDVIDADFTDS 100
           APG A GP   A  S +S GGDDVIDA+F+++
Sbjct: 608 APGGAGGPEAGAAPSGESGGGDDVIDAEFSET 639