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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944957
Clone id YMU02A01NGRL0007_L14
Library
Length 323
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_L14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGAAGCAGTGGTATCAACGCAG
AGTGGCCATTACGGCCGGGGACGTCTAACATAGCTGACTCATCGTCAATAAACCACTCAG
AATAACTCTGGCACAGAAAGTTGGAATAGATAAATCCGGGGTTGTCAAGATTATTGGACA
TCTCTTTGGTTGAGCGGGATCCCTCGTTTCAACGACTCGCCGAGATACATCTCCCTGAGG
ATATTTTCCTGCCTAAAGAATTTTTCCTGAACCAAAAAAAAATAAAGAACCAAAAAAAAA
AAACTTGTCGGCCGCCTCGGCCC
■■Homology search results ■■ -
sp_hit_id Q82Y15
Definition sp|Q82Y15|ORN_NITEU Oligoribonuclease OS=Nitrosomonas europaea
Align length 37
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944957|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_L14, 5'
         (194 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q82Y15|ORN_NITEU Oligoribonuclease OS=Nitrosomonas europaea G...    31   1.7  
sp|Q9JLC8|SACS_MOUSE Sacsin OS=Mus musculus GN=Sacs PE=1 SV=2          29   6.5  

>sp|Q82Y15|ORN_NITEU Oligoribonuclease OS=Nitrosomonas europaea
           GN=orn PE=3 SV=1
          Length = 181

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = +2

Query: 71  INPGLSRLLDISLVERDPSFQRLAE-----IHLPEDI 166
           +NPG  R+++++LV  D     LAE     +H P+DI
Sbjct: 18  LNPGTDRIIEVALVVTDAQLNTLAEAPVLVVHQPDDI 54


>sp|Q9JLC8|SACS_MOUSE Sacsin OS=Mus musculus GN=Sacs PE=1 SV=2
          Length = 4582

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 134  RLAEIHLPEDIFLPKEFF 187
            R+ E+ LPE +F+PKEFF
Sbjct: 3548 RVFEVMLPEKLFIPKEFF 3565
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944957|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_L14, 5'
         (194 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******