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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944328
Clone id YMU02A01NGRL0005_L07
Library
Length 394
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_L07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCGATTCCAAATGAATGTAAAGTCCGGGCTCCGCAAGAAGGATCTATGCCCGCATCAACA
CCCGAGGGGCAATCGACTACTAAGGTTGTATGGAGGTTGCAGCAATGAAGCTGCCATGCA
ATTTCATGCATGTATTGTATTTTTGGAGGGCATTCAGTTGCAGCTTCAGCTAGTTGTGAT
TGGCCAACACAGGGTTGAAAGGCTAATTTTTGAGGCATGGGCAATTCTTCTATTTCGTCA
AAGCAAGTGGTCTCTTTGTACAGCTTAACTAGAATCGGACATCACTGTGTTGCGGAAATA
TACCTATGAAATTTTGTCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q3AWF5
Definition sp|Q3AWF5|MTNA_SYNS9 Methylthioribose-1-phosphate isomerase OS=Synechococcus sp. (strain CC9902)
Align length 33
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944328|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_L07, 5'
         (320 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3AWF5|MTNA_SYNS9 Methylthioribose-1-phosphate isomerase OS=S...    31   1.7  
sp|Q7Z5P9|MUC19_HUMAN Mucin-19 OS=Homo sapiens GN=MUC19 PE=1 SV=2      30   2.8  
sp|P38742|RMD11_YEAST Protein RMD11 OS=Saccharomyces cerevisiae ...    29   8.2  

>sp|Q3AWF5|MTNA_SYNS9 Methylthioribose-1-phosphate isomerase
           OS=Synechococcus sp. (strain CC9902) GN=mtnA PE=3 SV=1
          Length = 335

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 155 ECPPKIQYMHEIAWQLHCCNLHTTLVVDCPSGV 57
           E  P++Q     AW+L CC +  T++VD  SG+
Sbjct: 178 ETRPRLQGAALSAWELGCCGVPATVIVDGASGL 210


>sp|Q7Z5P9|MUC19_HUMAN Mucin-19 OS=Homo sapiens GN=MUC19 PE=1 SV=2
          Length = 6254

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
 Frame = -1

Query: 248  TCFDEIEELPMPQKLAFQPCVGQSQLAEAATECPPKIQYMHEIAWQLH---CCNLHT--- 87
            TC +      +   + +  C  + Q+A+   EC    +Y H+I    H   CC       
Sbjct: 6157 TCKNNCRSSLVNVTVIYSGCKKRVQMAKCTGECEKTAKYNHDILLLEHSCLCCREENYEL 6216

Query: 86   -TLVVDCPSG 60
              +V+DCP G
Sbjct: 6217 RDIVLDCPDG 6226


>sp|P38742|RMD11_YEAST Protein RMD11 OS=Saccharomyces cerevisiae
           GN=RMD11 PE=1 SV=1
          Length = 1146

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = -1

Query: 302 YISATQ*CPILVK----LYKETTCFDEIEELPMPQKLAFQPCVGQSQLAEAATECPPKIQ 135
           YIS+   C I++K    + K +  +  I       K  +Q  + +S LA A TEC  KIQ
Sbjct: 574 YISSE--CHIILKEKERVLKHSKTYQSIRGAGNKGKYLYQRILAKSSLARALTECVDKIQ 631

Query: 134 YMHEIA 117
             +EIA
Sbjct: 632 -RNEIA 636
tr_hit_id B6M6Q5
Definition tr|B6M6Q5|B6M6Q5_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 64
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944328|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_L07, 5'
         (320 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6M6Q5|B6M6Q5_BRAFL Putative uncharacterized protein OS=Branc...    36   0.84 
tr|B6KBQ4|B6KBQ4_TOXGO Putative uncharacterized protein OS=Toxop...    34   4.1  

>tr|B6M6Q5|B6M6Q5_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_122198 PE=4 SV=1
          Length = 2935

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
 Frame = +1

Query: 28   APQEGS------MPASTPEGQSTTKVVWRLQQ*SCHAISCMYCIFGGHSVAASASC--DW 183
            AP EG       +P S  +   T+K+ WR +   C  + C+ C+F   S AA  +C  DW
Sbjct: 1997 APGEGGSKRRPPLPPSAGKRSGTSKMSWRRRTVVCCLLVCLLCVFPPVSNAAGVTCGPDW 2056

Query: 184  PTQG 195
               G
Sbjct: 2057 RRHG 2060


>tr|B6KBQ4|B6KBQ4_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_060650 PE=4 SV=1
          Length = 375

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 49  PASTPEGQSTTKVVWRLQQ*SCHAISCMYCIFGGHSVAASASCD 180
           PA+T EG++  +++  L+   C A+     +FG   V+AS +CD
Sbjct: 254 PATTAEGEAAFRILEALESFFCVAVDKPQSLFGQEDVSASPACD 297