DK944136
Clone id YMU02A01NGRL0005_B10
Library
Length 476
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_B10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
GGGGTCCTTACTATTTATTTTGATTAAAGAAATAACAATCATTTTTTGACACCACACAAC
ATTCCTGAACTTTGATAAACTTATCTGCTTTTTCGCGCACGACTTCTCCATTAATGTGCT
TATTATTTTGTGTAAGCACAATTCATACCTTTATTCCTCATGCTTACACTTACTCTACTG
ATTTTGTGCGATGAGATGTGAGTTCATCTATTTTATGCTGACGGAAATCTTACAGCTCTC
CCATAAATTTTAAGTAAGCGTGTTTCCCACCACTGTCATGTATGTAAATCATAGTTTTAA
GTGAACATGTATTCATACGATTTTCTAGGGTTAGATGATGATGCGGCGGCATGAACGCCA
TGCATTCAAGCAAGTCTTTTGTACATACTGTTAGCTGTATATGTCACATTGTTGTGACTT
GTAAAGACATTGGTTGATACATTAGAGCAGGGTTGTCCCACACATTATGTCTTGAA
■■Homology search results ■■ -
sp_hit_id P26015
Definition sp|P26015|VS06_ROTGA VP6 protein OS=Rotavirus B (isolate Human/China/ADRV/1982)
Align length 37
Score (bit) 31.2
E-value 2.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944136|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_B10, 5'
(476 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P26015|VS06_ROTGA VP6 protein OS=Rotavirus B (isolate Human/C... 31 2.5
sp|Q69BK3|UCRI_PONPY Cytochrome b-c1 complex subunit Rieske, mit... 31 3.2
sp|Q69BK5|UCRI_PANTR Cytochrome b-c1 complex subunit Rieske, mit... 31 3.2
sp|Q69BK6|UCRI_PANPA Cytochrome b-c1 complex subunit Rieske, mit... 31 3.2
sp|Q49X07|Y1546_STAS1 Uncharacterized protein SSP1546 OS=Staphyl... 30 4.2
sp|P47985|UCRI_HUMAN Cytochrome b-c1 complex subunit Rieske, mit... 30 4.2
sp|Q69BK4|UCRI_GORGO Cytochrome b-c1 complex subunit Rieske, mit... 30 4.2
sp|Q5ZLR5|UCRI_CHICK Cytochrome b-c1 complex subunit Rieske, mit... 30 7.2
sp|P0C7P4|UCRIL_HUMAN Cytochrome b-c1 complex subunit Rieske-lik... 29 9.4

>sp|P26015|VS06_ROTGA VP6 protein OS=Rotavirus B (isolate
Human/China/ADRV/1982) GN=S5 PE=4 SV=1
Length = 391

Score = 31.2 bits (69), Expect = 2.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2

Query: 379 KDLLECMAFMPPHHHLTLENRMNTCSLKTMIYIHDSG 269
K ++ CM+ M H T+E + TC + ++YI +G
Sbjct: 189 KGVVTCMSGMDSEHRFTVELKTRTCGIINIVYIPTAG 225


>sp|Q69BK3|UCRI_PONPY Cytochrome b-c1 complex subunit Rieske,
mitochondrial OS=Pongo pygmaeus GN=UQCRFS1 PE=3 SV=1
Length = 274

Score = 30.8 bits (68), Expect = 3.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1

Query: 443 NVSTNVFTSHNNVTYTANSMYKRLA*MHGVHAAASSSNPRKSYEYMFT 300
NV +V SH +V S Y+RL + ++ SS RK + Y+ T
Sbjct: 71 NVPASVCYSHTDVRVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVT 118


>sp|Q69BK5|UCRI_PANTR Cytochrome b-c1 complex subunit Rieske,
mitochondrial OS=Pan troglodytes GN=UQCRFS1 PE=3 SV=1
Length = 274

Score = 30.8 bits (68), Expect = 3.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1

Query: 443 NVSTNVFTSHNNVTYTANSMYKRLA*MHGVHAAASSSNPRKSYEYMFT 300
NV +V SH +V S Y+RL + ++ SS RK + Y+ T
Sbjct: 71 NVPASVCYSHTDVKVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVT 118


>sp|Q69BK6|UCRI_PANPA Cytochrome b-c1 complex subunit Rieske,
mitochondrial OS=Pan paniscus GN=UQCRFS1 PE=3 SV=1
Length = 274

Score = 30.8 bits (68), Expect = 3.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1

Query: 443 NVSTNVFTSHNNVTYTANSMYKRLA*MHGVHAAASSSNPRKSYEYMFT 300
NV +V SH +V S Y+RL + ++ SS RK + Y+ T
Sbjct: 71 NVPASVCYSHTDVKVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVT 118


>sp|Q49X07|Y1546_STAS1 Uncharacterized protein SSP1546
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=SSP1546 PE=4 SV=1
Length = 552

Score = 30.4 bits (67), Expect = 4.2
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -2

Query: 400 IQLTVCTKDLLECMAFMPPHHHLTLENRMNTCSLKTMIYIHDSGGKHAYLKFMGEL 233
IQ T D +E MA++ ++LEN N + + + DSGGK + + G L
Sbjct: 144 IQKAEETDDCIELMAYILEEAEVSLENTPNLLPVLKEVGVVDSGGKGLAIVYAGFL 199


>sp|P47985|UCRI_HUMAN Cytochrome b-c1 complex subunit Rieske,
mitochondrial OS=Homo sapiens GN=UQCRFS1 PE=1 SV=2
Length = 274

Score = 30.4 bits (67), Expect = 4.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1

Query: 443 NVSTNVFTSHNNVTYTANSMYKRLA*MHGVHAAASSSNPRKSYEYMFT 300
NV +V SH ++ S Y+RL + ++ SS RK + Y+ T
Sbjct: 71 NVPASVCYSHTDIKVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVT 118


>sp|Q69BK4|UCRI_GORGO Cytochrome b-c1 complex subunit Rieske,
mitochondrial OS=Gorilla gorilla gorilla GN=UQCRFS1 PE=3
SV=1
Length = 274

Score = 30.4 bits (67), Expect = 4.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1

Query: 443 NVSTNVFTSHNNVTYTANSMYKRLA*MHGVHAAASSSNPRKSYEYMFT 300
NV +V SH ++ S Y+RL + ++ SS RK + Y+ T
Sbjct: 71 NVPASVCYSHTDIKVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVT 118


>sp|Q5ZLR5|UCRI_CHICK Cytochrome b-c1 complex subunit Rieske,
mitochondrial OS=Gallus gallus GN=UQCRFS1 PE=2 SV=1
Length = 272

Score = 29.6 bits (65), Expect = 7.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1

Query: 443 NVSTNVFTSHNNVTYTANSMYKRLA*MHGVHAAASSSNPRKSYEYMFT 300
N +V HN+VT S Y+R M ++ +SS RK + Y+ T
Sbjct: 69 NAPASVRYVHNDVTVPDFSAYRREDVMDATTSSQTSSEDRKGFSYLVT 116


>sp|P0C7P4|UCRIL_HUMAN Cytochrome b-c1 complex subunit Rieske-like
protein 1 OS=Homo sapiens GN=UQCRFSL1 PE=2 SV=1
Length = 283

Score = 29.3 bits (64), Expect = 9.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1

Query: 443 NVSTNVFTSHNNVTYTANSMYKRLA*MHGVHAAASSSNPRKSYEYMFT 300
NV +V SH ++ S Y+RL + ++ S+ RK + Y+ T
Sbjct: 80 NVPASVCYSHTDIKVPDFSEYRRLEVLDSTKSSRESTEARKGFSYLVT 127


tr_hit_id A1DBS4
Definition tr|A1DBS4|A1DBS4_NEOFI Putative uncharacterized protein OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181)
Align length 41
Score (bit) 34.3
E-value 3.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944136|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_B10, 5'
(476 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A1DBS4|A1DBS4_NEOFI Putative uncharacterized protein OS=Neosa... 34 3.2
tr|A9UQU4|A9UQU4_MONBE Predicted protein (Fragment) OS=Monosiga ... 33 9.2

>tr|A1DBS4|A1DBS4_NEOFI Putative uncharacterized protein
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
NRRL 181) GN=NFIA_099490 PE=4 SV=1
Length = 614

Score = 34.3 bits (77), Expect = 3.2
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -2

Query: 469 HNVWDNPALMYQ---PMSLQVTTM*HIQLTVCTKDLLECMA 356
HNVWDNP + + P + + M HI+L+VC D L+ +A
Sbjct: 542 HNVWDNPDVYCEAGVPYNGRFACMAHIELSVCVSDELKKIA 582


>tr|A9UQU4|A9UQU4_MONBE Predicted protein (Fragment) OS=Monosiga
brevicollis GN=1642 PE=4 SV=1
Length = 255

Score = 32.7 bits (73), Expect = 9.2
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +3

Query: 102 TSPLMCLLFCVSTIHTFIPHAYTYSTDFVR*DVSSSILC*RKSYSSPINFK*ACFPPL 275
T+ + C+ FC + HT H+Y+ F + D + IL S + + F C+P L
Sbjct: 80 TTAIACM-FCSAVFHTMFSHSYSVYRQFAKLDYAGIILLIVGSVEAVLYFSFYCYPVL 136