DK944031 |
Clone id |
YMU02A01NGRL0004_M06 |
Library |
YMU02 |
Length |
529 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_M06. 5' end sequence. |
Accession |
DK944031 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
- |
Sequence |
TGGTTATTTACGGGTGGAGTATTGTTGTTGTTACTCATGGCGCGGACCTGCATGGTTATT TGCGGTGGGAGTGTTAAGAAGTCTGAGCAGTGGTTACTCTCAGCACCTCCAAACGACGCA GGCTGCGGTCAAGGGGGCGTTTGGTTGTAAAAGGTTTCTATATCTCATGGTCCGAACCTT TTTAGGTTATTTGCGGGAAGAGTGATGAGGGAGTCGTTGAGCAACTCATGGCCTGGATCT GGATGGTTATTTGCGGGAGGAGTGTTCATTGGCGACTTTATGTTTCTATGTCTTGTAACA TGCATATGTGAGCATTTGTGTTGCATTGTGATGTGCCAACCAGTGAATATTCCTAATTGG ATGAGATGGGTATGTAATTTTAGTCCATCAAAACACCCGCGGAAGATCATTGCGGTCTGG GTGTGCTGGCTAATTCTACTACGTCGGAATGTGAAGAGTTCCGATCTGGACGAAAGGAGA AGCCAACTCCTTGATCAAAAGAGCCGAAAGGAGAAGTCTACTCCTTGAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8WWN8 |
Definition |
sp|Q8WWN8|ARAP3_HUMAN Arf-GAP, Rho-GAP domain, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens |
Align length |
42 |
Score (bit) |
32.3 |
E-value |
1.4 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7WL88 |
Definition |
tr|A7WL88|A7WL88_9ASCI NADH-ubiquinone oxidoreductase chain 6 OS=Phallusia fumigata |
Align length |
79 |
Score (bit) |
35.4 |
E-value |
1.8 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944031|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_M06, 5' (529 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7WL88|A7WL88_9ASCI NADH-ubiquinone oxidoreductase chain 6 OS... 35 1.8 tr|A1JU57|A1JU57_YERE8 Putative fatty acid desaturase OS=Yersini... 35 3.0 tr|Q2JA24|Q2JA24_FRASC Cl-channel, voltage gated OS=Frankia sp. ... 27 3.3 tr|Q93RS4|Q93RS4_STRCO Putative transport integral membrane prot... 27 5.5 tr|B8ZYT9|B8ZYT9_ECOLX Putative uncharacterized protein OS=Esche... 33 8.8 tr|Q651Y1|Q651Y1_ORYSJ Putative uncharacterized protein P0556A05... 33 8.8 tr|A8Q568|A8Q568_MALGO Putative uncharacterized protein OS=Malas... 33 8.8
>tr|A7WL88|A7WL88_9ASCI NADH-ubiquinone oxidoreductase chain 6 OS=Phallusia fumigata GN=nad6 PE=3 SV=1 Length = 159
Score = 35.4 bits (80), Expect = 1.8 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 10/79 (12%) Frame = +1
Query: 115 DAGCGQGGVWL*KVSISHGPNLFRLFAGRVMRESLSN---SWPGSG-------WLFAGGV 264 D G G G K +S G L+ F G V L +W G G WL+ G Sbjct: 80 DEGVGGG-----KAPLSGGELLYGAFVGAVCGCGLVGGLGTWGGWGCGGVGQLWLYGSGY 134
Query: 265 FIGDFMFLCLVTCICEHLC 321 F+ + L +V +C HLC Sbjct: 135 FLAAVVILVVVLLVCLHLC 153
>tr|A1JU57|A1JU57_YERE8 Putative fatty acid desaturase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=YE2866 PE=4 SV=1 Length = 352
Score = 34.7 bits (78), Expect = 3.0 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -3
Query: 362 IQLGIFTGWHITMQHKCSHMHVTRHRNIKSPMNTPP 255 I L +FT W++++QH+ H H TR R + + T P Sbjct: 70 ILLILFTAWYMSLQHELIHGHPTRWRGVNQLLGTLP 105
>tr|Q2JA24|Q2JA24_FRASC Cl-channel, voltage gated OS=Frankia sp. (strain CcI3) GN=Francci3_2501 PE=4 SV=1 Length = 626
Score = 26.9 bits (58), Expect(2) = 3.3 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 7/59 (11%) Frame = +2
Query: 14 VEYCCCYSWRGPAWLF-AVG------VLRSLSSGYSQHLQTTQAAVKGAFGCKRFLYLM 169 +E C ++WRGP WL AVG VL +L Y + V G + L L+ Sbjct: 272 IEDLCDWAWRGPEWLRPAVGGLLLGTVLLALPQMYGVGYPVLEHTVHGGYALWFLLVLI 330
Score = 26.2 bits (56), Expect(2) = 3.3 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1
Query: 178 LFRLFAGRVMRESLSNSWPGSGWLFAGGVFIG 273 L L G+++ SL+ GSG +FA +FIG Sbjct: 326 LLVLIGGKIVATSLTIGIGGSGGVFAPSLFIG 357
>tr|Q93RS4|Q93RS4_STRCO Putative transport integral membrane protein OS=Streptomyces coelicolor GN=SCO6320 PE=4 SV=1 Length = 589
Score = 26.6 bits (57), Expect(2) = 5.5 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 7/60 (11%) Frame = +2
Query: 14 VEYCCCYSWRGPAWLFAVG-------VLRSLSSGYSQHLQTTQAAVKGAFGCKRFLYLMV 172 +E C + WRGP WL VL +L Y + A +G + L L++ Sbjct: 266 IEDACDWVWRGPEWLRPAAGGLVLGLVLLALPEMYGVGYPVLEGATEGKYAIGFLLALLL 325
Score = 25.8 bits (55), Expect(2) = 5.5 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1
Query: 178 LFRLFAGRVMRESLSNSWPGSGWLFAGGVFIG 273 L L G+++ SL+ GSG +FA +FIG Sbjct: 320 LLALLLGKMIATSLTIGIGGSGGVFAPSLFIG 351
>tr|B8ZYT9|B8ZYT9_ECOLX Putative uncharacterized protein OS=Escherichia coli GN=E104a_07 PE=4 SV=1 Length = 1174
Score = 33.1 bits (74), Expect = 8.8 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Frame = -3
Query: 338 WHITMQHKCSHMHVTRHRNIKSPMNTPPANNHPDPGHELLNDSLITLPANNLKRFGP*D- 162 WH+ M +M V ++ P N ANN+P H + SL + +RF D Sbjct: 936 WHVVMVEAVHYMEVDWRDSVVKPFNEQLANNYPFNPHSAQDASL-----DAFERFFKPDG 990
Query: 161 -IETFYNQ 141 ++TFY Q Sbjct: 991 ILDTFYQQ 998
>tr|Q651Y1|Q651Y1_ORYSJ Putative uncharacterized protein P0556A05.26 OS=Oryza sativa subsp. japonica GN=P0556A05.26 PE=4 SV=1 Length = 180
Score = 33.1 bits (74), Expect = 8.8 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 7/80 (8%) Frame = -3
Query: 320 HKCSHMHVTRHRNIKSPMNTPPANNHPDPGHELL----NDSLITLPANNLKRFG---P*D 162 H CS H R R+ ++P PP + PDPG +L SL T A + R D Sbjct: 22 HLCSTGHHRRRRHQQAP---PPVTSPPDPGVDLAALPPPPSLPTAAAPSPMRHSLCPAGD 78
Query: 161 IETFYNQTPP*PQPASFGGA 102 + + PP P PA+ GA Sbjct: 79 ASSAQRREPPWPPPAAGNGA 98
>tr|A8Q568|A8Q568_MALGO Putative uncharacterized protein OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=MGL_2737 PE=4 SV=1 Length = 401
Score = 33.1 bits (74), Expect = 8.8 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = -3
Query: 335 HITMQHKCSHMHVTRHRNIKSPMNTPPANNHPDPGHELLNDSLITLPANNL 183 H +M + +H H++ H++ + PM PP P H+ N S T+ L Sbjct: 66 HASMGNAATHSHLSMHQSKQHPMWAPPLYAQPTTKHKAPNPSCSTIDVAGL 116
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