DK944031
Clone id YMU02A01NGRL0004_M06
Library
Length 529
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_M06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
TGGTTATTTACGGGTGGAGTATTGTTGTTGTTACTCATGGCGCGGACCTGCATGGTTATT
TGCGGTGGGAGTGTTAAGAAGTCTGAGCAGTGGTTACTCTCAGCACCTCCAAACGACGCA
GGCTGCGGTCAAGGGGGCGTTTGGTTGTAAAAGGTTTCTATATCTCATGGTCCGAACCTT
TTTAGGTTATTTGCGGGAAGAGTGATGAGGGAGTCGTTGAGCAACTCATGGCCTGGATCT
GGATGGTTATTTGCGGGAGGAGTGTTCATTGGCGACTTTATGTTTCTATGTCTTGTAACA
TGCATATGTGAGCATTTGTGTTGCATTGTGATGTGCCAACCAGTGAATATTCCTAATTGG
ATGAGATGGGTATGTAATTTTAGTCCATCAAAACACCCGCGGAAGATCATTGCGGTCTGG
GTGTGCTGGCTAATTCTACTACGTCGGAATGTGAAGAGTTCCGATCTGGACGAAAGGAGA
AGCCAACTCCTTGATCAAAAGAGCCGAAAGGAGAAGTCTACTCCTTGAG
■■Homology search results ■■ -
sp_hit_id Q8WWN8
Definition sp|Q8WWN8|ARAP3_HUMAN Arf-GAP, Rho-GAP domain, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens
Align length 42
Score (bit) 32.3
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944031|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_M06, 5'
(529 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8WWN8|ARAP3_HUMAN Arf-GAP, Rho-GAP domain, ANK repeat and PH... 32 1.4
sp|Q54GU4|Y6505_DICDI Uncharacterized protein DDB_G0289975 OS=Di... 32 1.9
sp|Q54YH4|DHKB_DICDI Hybrid signal transduction histidine kinase... 31 4.1
sp|Q90WY4|ADA2A_DANRE Alpha-2A adrenergic receptor OS=Danio reri... 31 4.2
sp|Q9NUT2|ABCB8_HUMAN ATP-binding cassette sub-family B member 8... 30 5.5
sp|Q71H61|CA032_HUMAN Transmembrane and immunoglobulin domain-co... 30 7.2
sp|Q02941|VGNB_APMV Genome polyprotein B (Fragment) OS=Andean po... 30 9.4

>sp|Q8WWN8|ARAP3_HUMAN Arf-GAP, Rho-GAP domain, ANK repeat and PH
domain-containing protein 3 OS=Homo sapiens GN=ARAP3
PE=1 SV=1
Length = 1544

Score = 32.3 bits (72), Expect = 1.4
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1

Query: 169 GPNLFRLFAGRVMRESLSNSWPGSG-WLFAGGVFIGDFMFLC 291
GP L RL GR+ S S++ P G WL G+ GD +FLC
Sbjct: 796 GPGLLRL--GRLWLRSPSHTAPAPGLWLSGFGLLRGDHLFLC 835


>sp|Q54GU4|Y6505_DICDI Uncharacterized protein DDB_G0289975
OS=Dictyostelium discoideum GN=DDB_G0289975 PE=4 SV=1
Length = 1032

Score = 32.0 bits (71), Expect = 1.9
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = -3

Query: 335 HITMQHKCSHMHVTRHRNIKSPMNTPPANNHPDPGHELLNDSLITLPANNLKRFGP*DIE 156
+I ++ +H + ++ + N P+N + G+++ + S+IT+P NN+ P
Sbjct: 495 NIQLEQPINHQNQNIYQQFQQFPNQVPSNQNL-VGNDIFDTSIITIPQNNISSSQP---- 549

Query: 155 TFYNQTPP 132
+F Q+PP
Sbjct: 550 SFLQQSPP 557


>sp|Q54YH4|DHKB_DICDI Hybrid signal transduction histidine kinase B
OS=Dictyostelium discoideum GN=dhkB PE=1 SV=1
Length = 1969

Score = 30.8 bits (68), Expect = 4.1
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -3

Query: 299 VTRHRNIKSPMNTPPANNHPDPGHELLNDSLITLPANNLKRFGP*DIETFYNQTPP*P 126
V HR ++ + + N H D LI LP N + F + E+ N TPP P
Sbjct: 70 VNSHRKHRTRLKSKKGNKHETKKEIDYKDLLIKLPHNAVSNFNSLENESSDNLTPPPP 127


>sp|Q90WY4|ADA2A_DANRE Alpha-2A adrenergic receptor OS=Danio rerio
GN=adra2a PE=2 SV=1
Length = 388

Score = 30.8 bits (68), Expect = 4.2
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +1

Query: 187 LFAGRVMRESLSNSWPGSGWLFAGGVFIGDFMFLCLVTCICE--HLCCIVMCQPVNIPNW 360
L A VM SL+N G W F GGV+ ++ L ++ C HLC I + + +I
Sbjct: 70 LVATLVMPFSLANELMGM-WTF-GGVWCEIYLALDVLFCTASITHLCAISLDRYWSITQA 127

Query: 361 MRWVCNFSPSKHPRKIIAVWV 423
+ + +P + R I VW+
Sbjct: 128 IEYNLKRTPQRIKRIIFIVWI 148


>sp|Q9NUT2|ABCB8_HUMAN ATP-binding cassette sub-family B member 8,
mitochondrial OS=Homo sapiens GN=ABCB8 PE=1 SV=3
Length = 735

Score = 30.4 bits (67), Expect = 5.5
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +1

Query: 208 RESLSNSWPGSGWLFAGGVFIGDFMFLCLVTCICEHLCCIVMCQPVNIP 354
R L+ W S W + GG +G +V HLC + +C+ P
Sbjct: 76 RAPLAPRWSPSAWCWVGGALLGP-----MVLSKHPHLCLVALCEAEEAP 119


>sp|Q71H61|CA032_HUMAN Transmembrane and immunoglobulin
domain-containing protein C1orf32 OS=Homo sapiens
GN=C1orf32 PE=2 SV=1
Length = 639

Score = 30.0 bits (66), Expect = 7.2
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Frame = +1

Query: 244 WLFAGGVFIGDFMF-----LCLVTCICEHLCCIVMC 336
W+F G V +G F+F +C C CC V C
Sbjct: 187 WVFVGLVLLGVFLFFVLVGICWCQCCPHSCCCYVRC 222


>sp|Q02941|VGNB_APMV Genome polyprotein B (Fragment) OS=Andean
potato mottle virus PE=3 SV=1
Length = 729

Score = 29.6 bits (65), Expect = 9.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1

Query: 43 RTCMVICGGSVKKSEQWLLSAPPNDAGCGQGGV 141
RTCM++ G+V+K W ++ C +GGV
Sbjct: 650 RTCMLLEKGNVRKKLHWAMAEKKKIIFCAKGGV 682


tr_hit_id A7WL88
Definition tr|A7WL88|A7WL88_9ASCI NADH-ubiquinone oxidoreductase chain 6 OS=Phallusia fumigata
Align length 79
Score (bit) 35.4
E-value 1.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944031|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_M06, 5'
(529 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7WL88|A7WL88_9ASCI NADH-ubiquinone oxidoreductase chain 6 OS... 35 1.8
tr|A1JU57|A1JU57_YERE8 Putative fatty acid desaturase OS=Yersini... 35 3.0
tr|Q2JA24|Q2JA24_FRASC Cl-channel, voltage gated OS=Frankia sp. ... 27 3.3
tr|Q93RS4|Q93RS4_STRCO Putative transport integral membrane prot... 27 5.5
tr|B8ZYT9|B8ZYT9_ECOLX Putative uncharacterized protein OS=Esche... 33 8.8
tr|Q651Y1|Q651Y1_ORYSJ Putative uncharacterized protein P0556A05... 33 8.8
tr|A8Q568|A8Q568_MALGO Putative uncharacterized protein OS=Malas... 33 8.8

>tr|A7WL88|A7WL88_9ASCI NADH-ubiquinone oxidoreductase chain 6
OS=Phallusia fumigata GN=nad6 PE=3 SV=1
Length = 159

Score = 35.4 bits (80), Expect = 1.8
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = +1

Query: 115 DAGCGQGGVWL*KVSISHGPNLFRLFAGRVMRESLSN---SWPGSG-------WLFAGGV 264
D G G G K +S G L+ F G V L +W G G WL+ G
Sbjct: 80 DEGVGGG-----KAPLSGGELLYGAFVGAVCGCGLVGGLGTWGGWGCGGVGQLWLYGSGY 134

Query: 265 FIGDFMFLCLVTCICEHLC 321
F+ + L +V +C HLC
Sbjct: 135 FLAAVVILVVVLLVCLHLC 153


>tr|A1JU57|A1JU57_YERE8 Putative fatty acid desaturase OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=YE2866 PE=4 SV=1
Length = 352

Score = 34.7 bits (78), Expect = 3.0
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3

Query: 362 IQLGIFTGWHITMQHKCSHMHVTRHRNIKSPMNTPP 255
I L +FT W++++QH+ H H TR R + + T P
Sbjct: 70 ILLILFTAWYMSLQHELIHGHPTRWRGVNQLLGTLP 105


>tr|Q2JA24|Q2JA24_FRASC Cl-channel, voltage gated OS=Frankia sp.
(strain CcI3) GN=Francci3_2501 PE=4 SV=1
Length = 626

Score = 26.9 bits (58), Expect(2) = 3.3
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Frame = +2

Query: 14 VEYCCCYSWRGPAWLF-AVG------VLRSLSSGYSQHLQTTQAAVKGAFGCKRFLYLM 169
+E C ++WRGP WL AVG VL +L Y + V G + L L+
Sbjct: 272 IEDLCDWAWRGPEWLRPAVGGLLLGTVLLALPQMYGVGYPVLEHTVHGGYALWFLLVLI 330



Score = 26.2 bits (56), Expect(2) = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1

Query: 178 LFRLFAGRVMRESLSNSWPGSGWLFAGGVFIG 273
L L G+++ SL+ GSG +FA +FIG
Sbjct: 326 LLVLIGGKIVATSLTIGIGGSGGVFAPSLFIG 357


>tr|Q93RS4|Q93RS4_STRCO Putative transport integral membrane protein
OS=Streptomyces coelicolor GN=SCO6320 PE=4 SV=1
Length = 589

Score = 26.6 bits (57), Expect(2) = 5.5
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Frame = +2

Query: 14 VEYCCCYSWRGPAWLFAVG-------VLRSLSSGYSQHLQTTQAAVKGAFGCKRFLYLMV 172
+E C + WRGP WL VL +L Y + A +G + L L++
Sbjct: 266 IEDACDWVWRGPEWLRPAAGGLVLGLVLLALPEMYGVGYPVLEGATEGKYAIGFLLALLL 325



Score = 25.8 bits (55), Expect(2) = 5.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1

Query: 178 LFRLFAGRVMRESLSNSWPGSGWLFAGGVFIG 273
L L G+++ SL+ GSG +FA +FIG
Sbjct: 320 LLALLLGKMIATSLTIGIGGSGGVFAPSLFIG 351


>tr|B8ZYT9|B8ZYT9_ECOLX Putative uncharacterized protein
OS=Escherichia coli GN=E104a_07 PE=4 SV=1
Length = 1174

Score = 33.1 bits (74), Expect = 8.8
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -3

Query: 338 WHITMQHKCSHMHVTRHRNIKSPMNTPPANNHPDPGHELLNDSLITLPANNLKRFGP*D- 162
WH+ M +M V ++ P N ANN+P H + SL + +RF D
Sbjct: 936 WHVVMVEAVHYMEVDWRDSVVKPFNEQLANNYPFNPHSAQDASL-----DAFERFFKPDG 990

Query: 161 -IETFYNQ 141
++TFY Q
Sbjct: 991 ILDTFYQQ 998


>tr|Q651Y1|Q651Y1_ORYSJ Putative uncharacterized protein P0556A05.26
OS=Oryza sativa subsp. japonica GN=P0556A05.26 PE=4 SV=1
Length = 180

Score = 33.1 bits (74), Expect = 8.8
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Frame = -3

Query: 320 HKCSHMHVTRHRNIKSPMNTPPANNHPDPGHELL----NDSLITLPANNLKRFG---P*D 162
H CS H R R+ ++P PP + PDPG +L SL T A + R D
Sbjct: 22 HLCSTGHHRRRRHQQAP---PPVTSPPDPGVDLAALPPPPSLPTAAAPSPMRHSLCPAGD 78

Query: 161 IETFYNQTPP*PQPASFGGA 102
+ + PP P PA+ GA
Sbjct: 79 ASSAQRREPPWPPPAAGNGA 98


>tr|A8Q568|A8Q568_MALGO Putative uncharacterized protein
OS=Malassezia globosa (strain ATCC 96807 / CBS 7966)
GN=MGL_2737 PE=4 SV=1
Length = 401

Score = 33.1 bits (74), Expect = 8.8
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -3

Query: 335 HITMQHKCSHMHVTRHRNIKSPMNTPPANNHPDPGHELLNDSLITLPANNL 183
H +M + +H H++ H++ + PM PP P H+ N S T+ L
Sbjct: 66 HASMGNAATHSHLSMHQSKQHPMWAPPLYAQPTTKHKAPNPSCSTIDVAGL 116